Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04715 and RBAM_029090
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:27:16
# Commandline: needle
# -asequence dna-align/BSNT_04715___yuiF.1.9828.seq
# -bsequence dna-align/RBAM_029090___yuiF.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04715___yuiF-RBAM_029090___yuiF.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04715___yuiF-RBAM_029090___yuiF.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04715___yuiF
# 2: RBAM_029090___yuiF
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1343
# Identity: 1043/1343 (77.7%)
# Similarity: 1043/1343 (77.7%)
# Gaps: 28/1343 ( 2.1%)
# Score: 4018.0
#
#
#=======================================
BSNT_04715___ 1 ATGAATGCAGTCGTCATCGCAGTCCTGCTTATGCTTGTATTAAGCCTGCT 50
||||||||.||.||..|||||||..||||||||||.||.|||||||||||
RBAM_029090__ 1 ATGAATGCTGTTGTTGTCGCAGTATTGCTTATGCTCGTCTTAAGCCTGCT 50
BSNT_04715___ 51 GCGTGTCAATATTGTTATCGCATTAATTATAGGCGC-CTTGGCCGGCGGG 99
|||||||||||||.||||.||.|||||.||.||||| ||| |||||||||
RBAM_029090__ 51 GCGTGTCAATATTATTATAGCTTTAATGATCGGCGCGCTT-GCCGGCGGG 99
BSNT_04715___ 100 TTAACAGGCGGGCTCGGTCTTGGCGAAACGGTTAAAGCTTTCACAGACGG 149
.|.||.|||||..|.||.||.||.||.|||||.||.|||||.||.|||||
RBAM_029090__ 100 CTGACCGGCGGCTTAGGCCTCGGAGAGACGGTGAAGGCTTTTACGGACGG 149
BSNT_04715___ 150 TCTCGGCGGAAATGCCACCGTTGCAGTTAGCTATGCCATGCTTGGCGCGT 199
|||||||||||||||||||||.|||||.|||||.||..||||.||.||.|
RBAM_029090__ 150 TCTCGGCGGAAATGCCACCGTCGCAGTCAGCTACGCGCTGCTCGGAGCAT 199
BSNT_04715___ 200 TTGCCGCCGCTTTGACGAAAACGGGTCTTCCGGACGCAATGGTGGAAGCC 249
|||||||.||..||||.||.|||||.|||||.||.||||||||||||||.
RBAM_029090__ 200 TTGCCGCGGCGCTGACAAAGACGGGGCTTCCCGATGCAATGGTGGAAGCG 249
BSNT_04715___ 250 TCCGTTAAATTAATCGGAAATAAAGAAGATTCTCGAAAAAAAGCACTGTC 299
||.||.|||.||||||||||.||.||||||||.||.||||||||||||||
RBAM_029090__ 250 TCTGTCAAACTAATCGGAAAAAAGGAAGATTCGCGGAAAAAAGCACTGTC 299
BSNT_04715___ 300 TAAGGTGCTGATTGTGCTGATTATTTTAATTGTATCTTGTTTTTCGCAAA 349
.||.|||.|.||.||.||||||||||||||..||||.|||||.|||||||
RBAM_029090__ 300 AAAAGTGTTAATCGTACTGATTATTTTAATCATATCCTGTTTCTCGCAAA 349
BSNT_04715___ 350 ACGTCGTTCCGGTTCACATCGCGTTTATCCCGGTGCTGATTCCGCCGCTT 399
||||.||.||.||||||||.||||||||.||.||..||||||||||||||
RBAM_029090__ 350 ACGTGGTGCCCGTTCACATTGCGTTTATTCCTGTATTGATTCCGCCGCTT 399
BSNT_04715___ 400 TTGAAAATCTTTAATGAACTTGAAATGGACCGCCGTCTGATCGCGTGTGT 449
||.|||||.|||||.|||||||||||.||||||.|.||||||||||||||
RBAM_029090__ 400 TTAAAAATATTTAACGAACTTGAAATAGACCGCAGGCTGATCGCGTGTGT 449
BSNT_04715___ 450 AATTACATTTGGCTTAACGGCTCCTTATATTTTGCTTCCGGTCGGTTTCG 499
.||.|||||.||..|.||.||.||.|||||..|.||.||.|||||.||||
RBAM_029090__ 450 GATGACATTCGGACTGACTGCGCCGTATATCGTTCTGCCTGTCGGATTCG 499
BSNT_04715___ 500 GCCAAATCTTCCAAGGCATGCTGAAGGACAATATGGCGGATGCCGGGTTA 549
|.||.||.|||||.||.|||||||..||.|||||||||...|||||.|||
RBAM_029090__ 500 GACAGATTTTCCAGGGGATGCTGAGAGATAATATGGCGTCAGCCGGTTTA 549
BSNT_04715___ 550 AACGTTCCGCTTGCTGATATTCCGTACGCACTGATTATTCCAGTTGCAGG 599
||.||.|||||...||||||.|||||.||..|.||.||.||....||.||
RBAM_029090__ 550 AAGGTGCCGCTCAGTGATATCCCGTATGCTTTAATCATCCCGACGGCCGG 599
BSNT_04715___ 600 TATGGTTGTCGGCCTTATTTTATCAGTGATCGTATACCGTAAACCGAAAC 649
.||||..|||||..|.||||||.|.||.|||||.|.|||.||||||||..
RBAM_029090__ 600 GATGGCGGTCGGTTTAATTTTAGCCGTCATCGTCTTCCGGAAACCGAAGA 649
BSNT_04715___ 650 AATATGAAACAAAAGACATTTCAGGTGCAGAAGCATCG------CCATAT 693
|||||||.||.||.||.|| |||.|.|..|||| ||.|||
RBAM_029090__ 650 AATATGAGACGAAGGAGAT------TGCCGGACTATCGTCTTCTCCTTAT 693
BSNT_04715___ 694 ACGAGAAAAAGTATTGGTATCGC--GGTTCTAGCCATTGTTGTGTCACTC 741
||||.||||||.||||..||||| .|.||| ||||||..|||||.||.
RBAM_029090__ 694 ACGAAAAAAAGCATTGCCATCGCCTTGATCT--CCATTGCCGTGTCGCTT 741
BSNT_04715___ 742 GGCGTCCAGCTTTACTTATCTCAGACTTTGGGAGTAGAAGGAATGATTAT 791
|.|||.|||||.||..|.||.|||....|.|||||.|||||.|||||.||
RBAM_029090__ 742 GCCGTTCAGCTCTATCTGTCACAGGTGCTCGGAGTGGAAGGTATGATCAT 791
BSNT_04715___ 792 GGGGGCGCTCGCTGGTCTGATTGTT----CTGTTTGTCAGCGGTGTGATG 837
|||.|||||.|| |.|.||||| ||||||.|||||||.||.|||
RBAM_029090__ 792 GGGCGCGCTTGC----CGGCTTGTTTACGCTGTTTATCAGCGGAGTCATG 837
BSNT_04715___ 838 AAGCGTGATGAAGCGGACTCA-CTGATTACTGATGGAATGGTTTTAATGG 886
|||||..|||||||||| |.| |||||.||.||.||.|||.||.|.||||
RBAM_029090__ 838 AAGCGCAATGAAGCGGA-TAAGCTGATCACAGACGGCATGATTCTGATGG 886
BSNT_04715___ 887 CCTTTATCGGCTTTGTCATGCTTGTTGCAGCCGGGTTTTCAAACGTATTG 936
|.||||||||.|||||||||||||||||.|||||.||||||||.||||||
RBAM_029090__ 887 CTTTTATCGGGTTTGTCATGCTTGTTGCGGCCGGTTTTTCAAATGTATTG 936
BSNT_04715___ 937 ACGAAAACCGGAGATGTCGAGTCACTGGTCAAAACGTCAGCTGGTTTTAT 986
|..|||||.||.|||||.|..||..||||||||.|.|||.|.||..||||
RBAM_029090__ 937 AATAAAACGGGTGATGTGGCTTCCTTGGTCAAAGCATCAACAGGCCTTAT 986
BSNT_04715___ 987 CGGACACAGTCAGTCCTTGGGCGCATTGCTGATGCTCATTGTCGGCTTAT 1036
|||.|||||.||.||.||.|||||..|.||||||||..|.|||||.||||
RBAM_029090__ 987 CGGCCACAGCCAATCATTAGGCGCGCTCCTGATGCTGGTGGTCGGTTTAT 1036
BSNT_04715___ 1037 TAATTACAATGGGGATCGGATCTTCTTTTGCGACCATTCCTGTTATCACA 1086
||||.||.|||||.||||||||.||.|||||.|||.|.||.|||||.||.
RBAM_029090__ 1037 TAATCACGATGGGAATCGGATCATCATTTGCAACCGTACCCGTTATTACG 1086
BSNT_04715___ 1087 ACCATTTTCGTGCCTCTATGCATGCAGCTTGGATTCAGCCCGATGGCAAC 1136
|||||.|||||.||.||.|||...|||||.|||||||||||||||||.||
RBAM_029090__ 1087 ACCATATTCGTTCCGCTGTGCGCTCAGCTCGGATTCAGCCCGATGGCGAC 1136
BSNT_04715___ 1137 GATTGCGATTATCGGGGCTGCTGCTGCGCTTGGCGATGCCGGTTCACCTG 1186
|||.||..|.|||||.||.||.||.|||.|.||||||||.|||||.||||
RBAM_029090__ 1137 GATCGCCGTAATCGGAGCGGCCGCCGCGGTCGGCGATGCGGGTTCTCCTG 1186
BSNT_04715___ 1187 CCAGTGACAGTACGCTTGGGCCGACTTCAGGTTTGAGTGCGGACGGCCAG 1236
|.||||||||||||||.||||||||.|||||..|.||.||.|||||.|||
RBAM_029090__ 1187 CAAGTGACAGTACGCTCGGGCCGACGTCAGGCCTCAGCGCCGACGGACAG 1236
BSNT_04715___ 1237 CATCACCACATTTGGGATACTTGTGTGCCGACATTTATATTTTATAATAT 1286
||.|||||||||||||||||.||.||.|||||||||.|.||.|||||.||
RBAM_029090__ 1237 CACCACCACATTTGGGATACGTGCGTACCGACATTTCTTTTCTATAACAT 1286
BSNT_04715___ 1287 TCCGCTTGTCATCTTTGGCTGGATTGCAGCGCTTGTTTTATAG 1329
|||||||||.||.||.|||||||||||.|||||||||.|.||.
RBAM_029090__ 1287 TCCGCTTGTGATATTCGGCTGGATTGCCGCGCTTGTTCTGTAA 1329
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