Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04697 and RBAM_028980
See
Amino acid alignment /
Visit
BSNT_04697 in genome browser /
Return to
Orthologue table
########################################
# Program: needle
# Rundate: Mon 8 Mar 2010 06:27:12
# Commandline: needle
# -asequence dna-align/BSNT_04697___ald.1.9828.seq
# -bsequence dna-align/RBAM_028980___ald.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04697___ald-RBAM_028980___ald.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04697___ald-RBAM_028980___ald.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04697___ald
# 2: RBAM_028980___ald
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1154
# Identity: 888/1154 (76.9%)
# Similarity: 888/1154 (76.9%)
# Gaps: 40/1154 ( 3.5%)
# Score: 3392.5
#
#
#=======================================
BSNT_04697___ 1 ATGATCATAGGGGTTCCTAAAGAGATAAAAAACAATGAAAACCGTGTCGC 50
|||||.||.||||||||.||.||.||.||||||||||||||.||.||.||
RBAM_028980__ 1 ATGATTATCGGGGTTCCAAAGGAAATCAAAAACAATGAAAATCGAGTGGC 50
BSNT_04697___ 51 ATTAACACCCGGGGGCGTTTCTCAGCTCATTTCAAACGGCCACCGGGTGC 100
|||||||||.||.||||||||.|||||.||...|||||||||.|||||.|
RBAM_028980__ 51 ATTAACACCTGGAGGCGTTTCACAGCTTATCGGAAACGGCCATCGGGTTC 100
BSNT_04697___ 101 TGGTTGAAACAGGCGCGGGCCTTGGAAGCGGATTTGAAAATGAAGCCTAT 150
|.||.|||.|.||.|||||.||.||||||||.|||..||||||||..|||
RBAM_028980__ 101 TTGTGGAATCCGGAGCGGGACTCGGAAGCGGCTTTACAAATGAAGATTAT 150
BSNT_04697___ 151 GAGTCAGCAGGAGCGGAAATCATTGCTGATCCGAAA-CAGGTCTGGGACG 199
|..||||||||.||||||||..|.|..|| |.|||| ||.||.|||||.|
RBAM_028980__ 151 GTATCAGCAGGGGCGGAAATTCTGGAGGA-CAGAAAGCAAGTATGGGATG 199
BSNT_04697___ 200 CCGAAATGGTCATGAAGGTAAAAGAACCGCTGCCGGAAGAATATGTTTAT 249
|.||||||||||||||||||||||||||||||.|.|||||.||||..|||
RBAM_028980__ 200 CGGAAATGGTCATGAAGGTAAAAGAACCGCTGGCTGAAGAGTATGCGTAT 249
BSNT_04697___ 250 TTCCGCAAAGGACTTGTGCTGTTTACGTACCTTCATTTAGCAGCTGAGCC 299
|||||..||||.||.||..|.||.||.||||||||||||||.||.|||||
RBAM_028980__ 250 TTCCGTCAAGGTCTGGTCTTATTCACTTACCTTCATTTAGCTGCAGAGCC 299
BSNT_04697___ 300 TGAGCTTGC-ACAGGCCTTGAAGGATAAAGGAGTAACTGCTATCGCATAT 348
.||..|.|| |.||..||| |..||.|||||.||.||.|||||.||.||.
RBAM_028980__ 300 GGAATTAGCTAAAGCGCTT-ACAGAAAAAGGCGTGACAGCTATTGCGTAC 348
BSNT_04697___ 349 GAAACGGTCAGTGAA-GGCCGGACATTGCCTCTT------CTGACGCCAA 391
|||||||| || ||.|||||.|| ||||| ||.|||||.|
RBAM_028980__ 349 GAAACGGT-----AACGGACGGACGTT--CTCTTCCGCTGCTTACGCCGA 391
BSNT_04697___ 392 TGTCAGAGGTTGCGGGCAGAATGGCGGCGCAAATCGGCGCTCA-ATTCTT 440
||||.||.||.||.|||||||||||.|||||||||||.||||| .|||||
RBAM_028980__ 392 TGTCCGAAGTGGCCGGCAGAATGGCCGCGCAAATCGGAGCTCAGTTTCTT 441
BSNT_04697___ 441 AGAAAAGCCTAAAGGCGGAAAAGGCATTCTGCTTGCCGGGGTGCCGGGCG 490
|||||.||.||.|||||||||||.|||.|..|.|||||.||.|||||.|
RBAM_028980__ 442 -GAAAAACCAAAGGGCGGAAAAGGAATTTTATTAGCCGGCGTACCGGGTG 490
BSNT_04697___ 491 TTTCTCGCGGAAAAGTAACGATTATCGGAGGAGGCGTTGTCGGGACAAAC 540
|.||.|||||||||||.|||||.||||||||.||||..|||||.|||||.
RBAM_028980__ 491 TATCCCGCGGAAAAGTCACGATCATCGGAGGGGGCGGCGTCGGAACAAAT 540
BSNT_04697___ 541 GCGGCGAAAATGGCTGTCGGACTCGGTGCAGATGTGACGATCATTGACTT 590
||.||||||||||||||||||||||||||.||||||||.||.||.||.||
RBAM_028980__ 541 GCCGCGAAAATGGCTGTCGGACTCGGTGCCGATGTGACAATGATCGATTT 590
BSNT_04697___ 591 AAACGCAGACCGCTTGCGCCAGCTTGATGACATCTTCGGCCATCAGATTA 640
.||||||||||||.||||.|||||||||||.||.|||||.||||||||||
RBAM_028980__ 591 GAACGCAGACCGCCTGCGTCAGCTTGATGATATTTTCGGGCATCAGATTA 640
BSNT_04697___ 641 AAACGTTAATTTCTAATCCGGTCAATATTGCTGATGCTGTAGCGGAAGCG 690
||||.||.||.||.||.||.||.||||||||.|||.|.||.|||||||||
RBAM_028980__ 641 AAACATTGATGTCAAACCCTGTAAATATTGCGGATTCCGTCGCGGAAGCG 690
BSNT_04697___ 691 GATCTCCTCATTTGCGCGGTATTAATTCCGGGTGCTAAAGCTCCGACTCT 740
|||||.||.||.|||||.||..|.||.|||||.||.|||||.||||||||
RBAM_028980__ 691 GATCTTCTGATCTGCGCCGTGCTCATCCCGGGAGCCAAAGCGCCGACTCT 740
BSNT_04697___ 741 TGTCACTGAGGAAATGGTAAAACAAATGAAACCTGGTTCAGTCATTGTTG 790
.||.||.||.||||||||.||||||||||||||.|||||.||||||||||
RBAM_028980__ 741 CGTTACGGAAGAAATGGTTAAACAAATGAAACCGGGTTCCGTCATTGTTG 790
BSNT_04697___ 791 ATGTAGCGATCGACCAAGGCGGCATCGTCGAAACTGTCGACCATATCACA 840
||||.||.|||||.||.||||||||.||.||.||.||.||.|||||.|||
RBAM_028980__ 791 ATGTTGCCATCGATCAGGGCGGCATTGTGGAGACCGTTGATCATATTACA 840
BSNT_04697___ 841 ACACATGATCAGCCAACATATGAAAAACACGGGGTTGTGCATTATGCTGT 890
||.||.|||.|.||.||.||.|||||||||||.||.||.||.||.|||||
RBAM_028980__ 841 ACCCACGATAATCCGACTTACGAAAAACACGGCGTCGTTCACTACGCTGT 890
BSNT_04697___ 891 AGCGAACATGCCGGGCGCAGTCCCTCGTACGTCAACAATCGCCCTGACTA 940
.||.||.|||||||||||.||.||.||||||||.||..||||..|.||.|
RBAM_028980__ 891 CGCCAATATGCCGGGCGCCGTACCGCGTACGTCTACGCTCGCATTAACGA 940
BSNT_04697___ 941 ACGTTACTGTTCCATACGCGCTGCAAATCGCGAACAAAGGGGCAGTAAAA 990
|.||.||.|||||.||||||||.||||||||.||.|||||.||.|.|.||
RBAM_028980__ 941 ATGTAACCGTTCCTTACGCGCTTCAAATCGCCAATAAAGGCGCGGCACAA 990
BSNT_04697___ 991 GCGCTCGCAGACAATGCGGCACTGAGAGCGGGTTTAAACACCGCAAACGG 1040
||..|.|||||||...|.||.||.|.||||||.|||||.||.||.|||||
RBAM_028980__ 991 GCCATTGCAGACAGCCCTGCGCTTAAAGCGGGCTTAAATACGGCTAACGG 1040
BSNT_04697___ 1041 ACACGTGACCTATGAAGCTGTAGCAAGAGATCTAGGCTATGAGTATGTTC 1090
|||.||.||.||||||||.|||||.|.|||..||||||||||.||.||.|
RBAM_028980__ 1041 ACATGTCACGTATGAAGCGGTAGCCAAAGACTTAGGCTATGACTACGTGC 1090
BSNT_04697___ 1091 CTGCCGAGAAAGCTTTAC-AGGATGAATCATCTGTAGCGGGT------GC 1133
||||.||.|||||..|.| |||.| |||.| ||
RBAM_028980__ 1091 CTGCTGAAAAAGCAATGCAAGGTT-------------CGGCTGCAAAAGC 1127
BSNT_04697___ 1134 TTAA 1137
||||
RBAM_028980__ 1128 TTAA 1131
#---------------------------------------
#---------------------------------------
Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.