Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04692 and RBAM_028940
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:27:11
# Commandline: needle
# -asequence dna-align/BSNT_04692___yukC.1.9828.seq
# -bsequence dna-align/RBAM_028940___yukC.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04692___yukC-RBAM_028940___yukC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04692___yukC-RBAM_028940___yukC.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04692___yukC
# 2: RBAM_028940___yukC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1399
# Identity: 938/1399 (67.0%)
# Similarity: 938/1399 (67.0%)
# Gaps: 155/1399 (11.1%)
# Score: 3010.0
#
#
#=======================================
BSNT_04692___ 1 ATGTCAGGTAAACAAAAATCATATTTAGAAAACCAATTAGAAGCTGTTGC 50
|||.|||||.|..|.|.|||.||||||||||...|||||||.||.|| |
RBAM_028940__ 1 ATGACAGGTCATAACAGATCTTATTTAGAAACAGAATTAGACGCCGT--C 48
BSNT_04692___ 51 CGAGA--AAACAGATGCCGGCTATACATTTACCTTTCAACGGGAAAAAAT 98
||.|| ||||.||..|.||||..||.||.|||||.||.|||||||||||
RBAM_028940__ 49 CGGGAAGAAACCGAATCAGGCTTCACGTTCACCTTCCAGCGGGAAAAAAT 98
BSNT_04692___ 99 AAAGCTTCTCGACGGTCTTGAAGCTAACGTGATCAAAGATATAAATCCAT 148
.||||||||.|||||.||.|||||.||||||||.||||||....||||.|
RBAM_028940__ 99 CAAGCTTCTTGACGGGCTGGAAGCAAACGTGATTAAAGATGCTGATCCTT 148
BSNT_04692___ 149 TTTTTTATAAAGAAATCGATGTGACGGATGATGAAGTAATCATCACAATC 198
|||||.|.|||||..||...||..|.||.||.|||||||.||||||||||
RBAM_028940__ 149 TTTTTCAAAAAGAGGTCTCAGTTTCAGAAGACGAAGTAACCATCACAATC 198
BSNT_04692___ 199 CAACCTCCCTCCTCCTATAAAGCATTCCGCTTCATGAAAGCTAAGGATAA 248
.|||||||.||.||.|||.|.||.|||||||..||.||||..||.|||||
RBAM_028940__ 199 AAACCTCCTTCTTCTTATCAGGCTTTCCGCTATATAAAAGGAAAAGATAA 248
BSNT_04692___ 249 AAAAAGTAAATGGCAGTTTGCCTATCAGCTTGTTCAAGCCGTACAGCAGC 298
||||||.|..|||||.||||||||.|..||.||.||||||||..|.||||
RBAM_028940__ 249 AAAAAGCAGGTGGCAATTTGCCTACCGTCTCGTCCAAGCCGTGAAACAGC 298
BSNT_04692___ 299 ACAATCTGTCGAGGCTGAATTTGATTGTCGCTCCTGAAAACATTGTATTC 348
|.||.|||....|.||.|||.||||||.|||.||||||||.||.||.||.
RBAM_028940__ 299 ATAAGCTGAAACGTCTCAATCTGATTGCCGCCCCTGAAAATATCGTGTTT 348
BSNT_04692___ 349 GATAAAGGGCTTACGCCTTATTTTCTCCATTATGGAGTAAAAGAAAGCAT 398
|||||||.|||.||||||||.|||||.|||||.||.|||||.||.|||.|
RBAM_028940__ 349 GATAAAGCGCTGACGCCTTACTTTCTTCATTACGGCGTAAAGGAGAGCCT 398
BSNT_04692___ 399 TCCTCCTTACGAGCGTGATGAG-GAAAGAGTATGGCAGGAGCTGAAAGCG 447
|||.|||||.|||...||| || |||||.||.|...|.|||||.|||||.
RBAM_028940__ 399 TCCGCCTTATGAGGAAGAT-AGAGAAAGGGTGTTAAAAGAGCTCAAAGCC 447
BSNT_04692___ 448 GCAGCGGCTTTGGCAGTTGACGGCGCTTTTGCGTTTGAAGACTACCTGAA 497
...|||||..|.|.||.||||||.||.|...|.||.||.||.||..||||
RBAM_028940__ 448 TGTGCGGCGCTTGTAGCTGACGGGGCGTACACCTTCGATGAATATTTGAA 497
BSNT_04692___ 498 ATTCAATGAAACGC-TCACGTTCTCCGCAGAGG-CAAAGGCGATATTAGA 545
.|.|||.||.|||| |||| |||||..|.|||| .|||.||| |..||||
RBAM_028940__ 498 GTACAAGGAGACGCTTCAC-TTCTCTCCTGAGGTGAAAAGCG-TGCTAGA 545
BSNT_04692___ 546 TACTGAATCCTATGATGATTTGCTCGAGCTG---------ATTCAAATC- 585
..|.|| ||.|||| ...||.||| |||||||.|
RBAM_028940__ 546 GGCGGA-------GACGATT--GAAGAACTGGAAGAAACCATTCAAACCG 586
BSNT_04692___ 586 CATATTGATGAGCTCGAAGCCAAAG---CAAAAACATACATACATATCCC 632
|| ||||||...||||||| |||| | ||.|||||||||.|..|.||
RBAM_028940__ 587 CA-ATTGATTCCCTCGAAG--AAAGGGAC-AAGACATACATAAAACTGCC 632
BSNT_04692___ 633 GAGAAAGAAGTGGAACATCCAGCGATATATCGGCCTGGGGCT--CATTGT 680
||.||||||.|||||.|||||..||||...|||.||||.||| || ||
RBAM_028940__ 633 GAAAAAGAAATGGAAAATCCAAAGATACGCCGGGCTGGCGCTTGCA--GT 680
BSNT_04692___ 681 TTTGCTTGTACCGGCACTTATTTATTCGATGTACGCCTTATTTTTCGCGC 730
..|.|||||.|||.|||||.||||.||..|.||||...|.||||||||.|
RBAM_028940__ 681 CCTCCTTGTGCCGACACTTCTTTACTCCTTATACGTTCTGTTTTTCGCCC 730
BSNT_04692___ 731 AGCCAAAGCACCAGGCGATAGTGGACAGCAACCGTGCGTTCTTAAACAAG 780
||||||||||..||||.||....||.||||||||....||.|||||..||
RBAM_028940__ 731 AGCCAAAGCAAGAGGCAATTACAGAAAGCAACCGCTATTTTTTAAATCAG 780
BSNT_04692___ 781 CAGTACAGTGAAGTCATCAGCACACTGTCCAAGTACGAGGCGGAAAGCCT 830
||||||||..|||||||...||||||..||||.|||||.|||||||||||
RBAM_028940__ 781 CAGTACAGCAAAGTCATTGACACACTCGCCAAATACGATGCGGAAAGCCT 830
BSNT_04692___ 831 GCCTGAATCGGTGCAGTATCAGCTGGCGACGTCCTATGTTGAGGTCGAAA 880
.||.|||||.||||||||..||||.||..|.||.|||||.|..||.||||
RBAM_028940__ 831 CCCGGAATCTGTGCAGTACGAGCTTGCTTCCTCTTATGTGGCAGTTGAAA 880
BSNT_04692___ 881 ACCTGGGGAGTGCAAAAAC----CAAAAATATAGAAAATAACTTAGTCAC 926
|.|| |||.| ||.||| .||||||||.|..||| .|.|||||
RBAM_028940__ 881 ATCT---GAGAG-AAGAACAGCGGAAAAATATCGGGAAT---CTGGTCAC 923
BSNT_04692___ 927 CCTTCAATCAGACCCTCAGCATTTCTTATATTGGATTGATTAT-GGTAGA 975
.||.|||||||||||..||||||||.|.||||||||||| ||| ||.|||
RBAM_028940__ 924 GCTGCAATCAGACCCGAAGCATTTCCTTTATTGGATTGA-TATCGGCAGA 972
BSNT_04692___ 976 GGAGAATACAAAGAAGCGATCAGTATCGGCCGTAAGCTTGAATACAATGA 1025
||.|||.|..|||||||.||||..||||||||.||.|||||.|||||...
RBAM_028940__ 973 GGGGAAAATGAAGAAGCCATCAAAATCGGCCGCAATCTTGAGTACAACCC 1022
BSNT_04692___ 1026 TTATATTT-------ACTTTGCCCTAGCTAAATATAAACAGCAGCTTTTA 1068
.||.||.| |||| .|.||||||||||||||..|.|||
RBAM_028940__ 1023 GTACATCTGGCTCGGACTT-------ACAAAATATAAACAGCAATTATTA 1065
BSNT_04692___ 1069 TCTGAGGA---TACAAATGATGAAGATATACAAAAAGAACTTGACTCAGT 1115
.|.||.|| ||..||.||.||.||.|..||.||||||||.|||.|.||
RBAM_028940__ 1066 GCGGATGACAGTATGAAAGACGACGAAAAGCAGAAAGAACTGGACGCCGT 1115
BSNT_04692___ 1116 AAATAGTGAGCTTGAAAAAGCCCAAAAAGAACGTCAAGAAAATAAACAGT 1165
..|.||.|||||||..||.||..||||||
RBAM_028940__ 1116 GGAAAGCGAGCTTGCGAAGGCGAAAAAAG--------------------- 1144
BSNT_04692___ 1166 CTAATTCTGAAACATCGTTAGTCGATACAAGCGAAGAACAGACACAAACA 1215
||.|| ||.||.||| ||.|||.|
RBAM_028940__ 1145 -------------------AGGCG--------GAGGAGCAG-CATAAAGA 1166
BSNT_04692___ 1216 GACGAAGAAAAACAAGCAGAAGAGAAAGCGGCAGAAGAAAAAGCCGCAGC 1265
..||.||.||||| .|.||.|.||.| .||||..|.||
RBAM_028940__ 1167 AGCGGAGGAAAAC-------GGTGACACCGCC-------GAAGCTTCCGC 1202
BSNT_04692___ 1266 CG---AGGA-AAAAGCGAAAAAAGAAGAACAGAAGAAAAAAGAAGACGAG 1311
|| |||| .||||| |||.||| ||| |||.|||| ||.
RBAM_028940__ 1203 CGGACAGGATGAAAGC----AAACAAG-ACA-AAGCAAAA-------GAT 1239
BSNT_04692___ 1312 AAAAAAGA-AACAGAAAAGAAAGATGAGAAAAAAGATGACAAATAA--- 1356
||.||||| ||| ||.|||||||||||||||||||||||.|||.||
RBAM_028940__ 1240 AACAAAGAGAAC-GACAAGAAAGATGAGAAAAAAGATGAAAAAAAATAA 1287
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