Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_04684 and RBAM_028890

See Amino acid alignment / Visit BSNT_04684 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:27:09
# Commandline: needle
#    -asequence dna-align/BSNT_04684___yueE.1.9828.seq
#    -bsequence dna-align/RBAM_028890___yueE.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04684___yueE-RBAM_028890___yueE.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04684___yueE-RBAM_028890___yueE.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04684___yueE
# 2: RBAM_028890___yueE
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 534
# Identity:     418/534 (78.3%)
# Similarity:   418/534 (78.3%)
# Gaps:           6/534 ( 1.1%)
# Score: 1628.0
# 
#
#=======================================

BSNT_04684___      1 ATGAGAAAGGTTACATTAATGGATGTTTTCACCCATCCAATTGCACAAAA     50
                     ||||||||.||.||.|||||||||||.||||||||||||||.||||||||
RBAM_028890__      1 ATGAGAAATGTAACGTTAATGGATGTCTTCACCCATCCAATCGCACAAAA     50

BSNT_04684___     51 ATATCTTCAGCGTTCCGGCGTGGCACATGCGATTGCCTGCGCTTATCATG    100
                     .|||.|.|||||||||||.||.||.||||||||.||||||||.|.|||||
RBAM_028890__     51 GTATTTACAGCGTTCCGGTGTCGCCCATGCGATCGCCTGCGCGTTTCATG    100

BSNT_04684___    101 CATACAGGCTGTCTGTGAAGGCTGACATTAATCCTGATTTAGCAGCAAAA    150
                     |||||.|.||..|.||.||.||.|...|.|..||.|||.|.||.||.|||
RBAM_028890__    101 CATACCGTCTTGCCGTAAAAGCAGGTGTCAGCCCGGATCTTGCGGCGAAA    150

BSNT_04684___    151 GCGGCACTGCTTCATGACATTGGCCATTATGAATGGTATACAGACGGAAA    200
                     |||||..|.||.||||||.|.|||||||||||||||||.||||||||.||
RBAM_028890__    151 GCGGCCTTACTGCATGACGTCGGCCATTATGAATGGTACACAGACGGCAA    200

BSNT_04684___    201 GTGGGATTATGAGAAATACAAAAGAAATGACATTCATGCCATTAAAGGGG    250
                     .|||||||||||.||.||||.||||||.||.||.||||||||||||||.|
RBAM_028890__    201 ATGGGATTATGAAAAGTACAGAAGAAACGATATCCATGCCATTAAAGGAG    250

BSNT_04684___    251 CGGAACGGGCGCATAAACTTCTGATTCGGCTTGGCGAGGAACCGAAAGCA    300
                     ||||||||||||||||.||.||.||.|||||.||.||.|||||||||||.
RBAM_028890__    251 CGGAACGGGCGCATAAGCTGCTCATCCGGCTCGGTGAAGAACCGAAAGCG    300

BSNT_04684___    301 GCAAAAGAGATTGCACTAGCCATTTTGCTTCATACAGATTCCTATTTGCC    350
                     ||.||.||.|||||.||.||.|||.|||||||.||.|||||||||.||||
RBAM_028890__    301 GCGAAGGACATTGCGCTGGCGATTCTGCTTCACACCGATTCCTATCTGCC    350

BSNT_04684___    351 TGAAGGCGAATTAGATAAAAACACACTGCAGCAGATTGTCAAAAAAGCGG    400
                     ||||||||||.|.||.||.||.||.||.|||||.||.||.|||.||||||
RBAM_028890__    351 TGAAGGCGAACTGGACAAGAATACGCTCCAGCAAATCGTGAAACAAGCGG    400

BSNT_04684___    401 ACGAACTGGATGAAGAGCCGGGCGGCCACCATCATTACCGCCAAATTGAT    450
                     |.|||||.||||||||.||.|||||.||.||.||||||||||||||.|||
RBAM_028890__    401 ATGAACTCGATGAAGAACCCGGCGGACATCACCATTACCGCCAAATGGAT    450

BSNT_04684___    451 CCTTCAACCGCACGAAAAAAAATAGAAAAGCTGGACCAATTAATCGACCA    500
                     |...|..||||.|..|||.||||..|||||||.||.||.|||||.|||||
RBAM_028890__    451 CACACGGCCGCGCTCAAACAAATCCAAAAGCTTGATCAGTTAATTGACCA    500

BSNT_04684___    501 AGCCCAGGCAT---CCGTGATAAAGCCTGTATAA    531
                     ||||||   ||   ||.|.|.||...|.||.||.
RBAM_028890__    501 AGCCCA---ATATCCCATAAGAAGTTCAGTCTAG    531


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