Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_04675 and RBAM_028860

See Amino acid alignment / Visit BSNT_04675 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:27:09
# Commandline: needle
#    -asequence dna-align/BSNT_04675___yueH.1.9828.seq
#    -bsequence dna-align/RBAM_028860___yueH.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04675___yueH-RBAM_028860___yueH.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04675___yueH-RBAM_028860___yueH.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04675___yueH
# 2: RBAM_028860___yueH
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 256
# Identity:     187/256 (73.0%)
# Similarity:   187/256 (73.0%)
# Gaps:          14/256 ( 5.5%)
# Score: 651.0
# 
#
#=======================================

BSNT_04675___      1 ATGAAAATCAGAAAAGCAAATATCAATAC---GCAAACCGGAATGATCAC     47
                     |||||||||||||||||.|||||   |||   |||..|||||||||||..
RBAM_028860__      1 ATGAAAATCAGAAAAGCGAATAT---TACCGTGCAGTCCGGAATGATCGG     47

BSNT_04675___     48 GGACGTGTATCTGCATGAAAACAGAAAAGAACTGCGCACGCTTGTAGCGG     97
                     .||.||.||||||||||||||.|.||||||||.||..||.||||||||.|
RBAM_028860__     48 TGATGTATATCTGCATGAAAATAAAAAAGAACAGCATACCCTTGTAGCCG     97

BSNT_04675___     98 TACCGCAGCTGGAGTGGAGCACGATCATTTCCTATGAAGAAGATAAAGCA    147
                     |.|||.|.||.||||||||||||||||||||||||||.|||||.|||  |
RBAM_028860__     98 TTCCGGAACTTGAGTGGAGCACGATCATTTCCTATGAGGAAGAGAAA--A    145

BSNT_04675___    148 A--CTCTGCCTGAACGGCTGGAAGCGTCGTTGCGCCGGCATACAGAGGA-    194
                     |  |.|||.|..|.|||||...|...||.||..||..||..|..||.|| 
RBAM_028860__    146 AGGCGCTGGCGCAGCGGCTTTTACAATCATTCAGCAAGCTGATTGAAGAA    195

BSNT_04675___    195 -AACCCCTGCTGGTGAGCTGGCCAAAAAAATCATTCATTGGGTAACAGAA    243
                      |||||  ||.||.|||||.|||...||.|||...||||||||..|.|||
RBAM_028860__    196 GAACCC--GCCGGAGAGCTCGCCGGCAAGATCTCCCATTGGGTGGCTGAA    243

BSNT_04675___    244 ATGTAA    249
                     ||||||
RBAM_028860__    244 ATGTAA    249


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