Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_04672 and RBAM_028840

See Amino acid alignment / Visit BSNT_04672 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:27:09
# Commandline: needle
#    -asequence dna-align/BSNT_04672___yueJ.1.9828.seq
#    -bsequence dna-align/RBAM_028840___yueJ.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04672___yueJ-RBAM_028840___yueJ.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04672___yueJ-RBAM_028840___yueJ.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04672___yueJ
# 2: RBAM_028840___yueJ
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 558
# Identity:     436/558 (78.1%)
# Similarity:   436/558 (78.1%)
# Gaps:          12/558 ( 2.2%)
# Score: 1696.0
# 
#
#=======================================

BSNT_04672___      1 ATGAAAAAAGCACTTATTTGTATTGATTATACGAATGATTTTGTGGC-GA     49
                     ||||||||||||.||||.||.||||||||||||||||||||||..|| ||
RBAM_028840__      1 ATGAAAAAAGCATTTATATGCATTGATTATACGAATGATTTTGCAGCAGA     50

BSNT_04672___     50 GTGACGGAAAATTGACCTGCGGGGAGCCCGGCAGAATGATTGAAGAGGCG     99
                     | .||||...|||.||||||||.||.||||..|||..|||||||||..||
RBAM_028840__     51 G-AACGGGGCATTAACCTGCGGAGAACCCGCGAGACAGATTGAAGATACG     99

BSNT_04672___    100 ATCGTCAATTTAACCGAAGAATTCATCACAAACGGTGATTACGTCGTATT    149
                     ||.||||.|||.||..|||.|||.||...||||||||||||.||.||.||
RBAM_028840__    100 ATTGTCAGTTTGACGCAAGCATTTATAGAAAACGGTGATTATGTTGTCTT    149

BSNT_04672___    150 AGCAGTAGATTCTCATGCTGAAGGGGATCAATATCACCCCGAAACCCGTC    199
                     .||.||.|||||.||||.||.||..|||.|.|.|||.|||||.||.||.|
RBAM_028840__    150 TGCGGTTGATTCGCATGATGCAGACGATGACTTTCATCCCGAGACACGCC    199

BSNT_04672___    200 TTTTTCCTCCGCATAATATAAAAGGCACGGAAGGAAAAGATCTGTACGGA    249
                     |||||||||||||||||||.||.||||||||.||.|||||.|||||||||
RBAM_028840__    200 TTTTTCCTCCGCATAATATCAACGGCACGGAGGGCAAAGAGCTGTACGGA    249

BSNT_04672___    250 AAGCTTTTGCCTCTATATCAGAAACATGAACATG-----AGCCTAATGTT    294
                     |.|||.|.||||||.|||.||||||||.||||.|     |.|.|||    
RBAM_028840__    250 AGGCTATCGCCTCTTTATGAGAAACATAAACACGCAAAAAACGTAA----    295

BSNT_04672___    295 TACTACATGGAAAAAACGAGATATTCTGCTTTTGCGGGAACTGATTTAGA    344
                      |.||.|||||||||||||||||||||||||||||||||||.||||||||
RBAM_028840__    296 -ATTATATGGAAAAAACGAGATATTCTGCTTTTGCGGGAACGGATTTAGA    344

BSNT_04672___    345 GCTCAAACTCAGAGAGCGGCAGATTGGCGAACTGCACCTTGCCGGTGTCT    394
                     |||.|||||..|.||.||||||||....||.|||||.|||||.||..|.|
RBAM_028840__    345 GCTGAAACTGCGGGAACGGCAGATCACTGAGCTGCATCTTGCGGGCCTGT    394

BSNT_04672___    395 GCACAGATATTTGTGTGTTGCATACAGCTGTTGACGCATATAACAAAGGT    444
                     ||||.||.||.||.||..|.||.||.||.||||||||.||.|||||.||.
RBAM_028840__    395 GCACGGACATCTGCGTTCTTCACACGGCGGTTGACGCCTACAACAAGGGC    444

BSNT_04672___    445 TTTCGGATTGTTGTGCATAAACAAGCTGTTGCCAGCTTTAATCAGGAGGG    494
                     ||||.|||.||..|.|||.||.|.|||||.|||||||||||||.|||.||
RBAM_028840__    445 TTTCAGATCGTCATTCATCAAAACGCTGTGGCCAGCTTTAATCCGGAAGG    494

BSNT_04672___    495 GCACGCATGGGCTCTTTCCCATTTTGCAAACAGCATCGGAGCGCAAGTGG    544
                     |||.|.||||||.||.|||||||||...||||||||||||||||||||||
RBAM_028840__    495 GCATGAATGGGCCCTGTCCCATTTTAAGAACAGCATCGGAGCGCAAGTGG    544

BSNT_04672___    545 CAGAGTAA    552
                     ||||||||
RBAM_028840__    545 CAGAGTAA    552


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