Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04670 and RBAM_028820
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:27:08
# Commandline: needle
# -asequence dna-align/BSNT_04670___yuxH.1.9828.seq
# -bsequence dna-align/RBAM_028820___yuxH.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04670___yuxH-RBAM_028820___yuxH.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04670___yuxH-RBAM_028820___yuxH.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04670___yuxH
# 2: RBAM_028820___yuxH
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1262
# Identity: 924/1262 (73.2%)
# Similarity: 924/1262 (73.2%)
# Gaps: 70/1262 ( 5.5%)
# Score: 3275.5
#
#
#=======================================
BSNT_04670___ 1 ATGAGGGTGTTTGTTGCAAGACAGCCTATTTTTAATAGAAAAGAACAGGT 50
||||.||||||||||||.|||||||||||.||.||.|||||.||||||||
RBAM_028820__ 1 ATGAAGGTGTTTGTTGCGAGACAGCCTATCTTCAACAGAAACGAACAGGT 50
BSNT_04670___ 51 TGTTGCTTATGAACTGCTGTATAGAGAAAGCGAAGAGAA-CGTGTAT--- 96
|||||||||||||||.||.||..|.||.||||||||||| ||| |||
RBAM_028820__ 51 TGTTGCTTATGAACTTCTTTACCGGGAGAGCGAAGAGAACCGT-TATTCG 99
BSNT_04670___ 97 AGCGCTAAAGACGGCGATCAGGCAACAACAGATTTGGTGATCAACAGCTT 146
..|||| |||||.|||.|.||.||.||.|||.|..|.||.||||||||
RBAM_028820__ 100 GCCGCT---GACGGAGATAAAGCTACGACGGATCTCATTATTAACAGCTT 146
BSNT_04670___ 147 TTTAAACATCGGAATTGAGAAGCTGACGGAAGGGAAACGCTGTTTTGTTA 196
|.|.|||||||||||.||.||||||||.||.|||||||||||.|||||.|
RBAM_028820__ 147 TATCAACATCGGAATCGAAAAGCTGACTGAGGGGAAACGCTGCTTTGTGA 196
BSNT_04670___ 197 ATTTTACGGAAAGCCTGATGTTTTCGAATCTTCCCACCTCCTTCAATCCG 246
|||||||.|||||||||||||||||..||||.||.||||||||..||||.
RBAM_028820__ 197 ATTTTACAGAAAGCCTGATGTTTTCAGATCTCCCTACCTCCTTTGATCCT 246
BSNT_04670___ 247 AAACAGCTTGTCATTGAAATCCTTGAAGATATACCGATCACGCCGGCCCT 296
.|.||||||.|.||.|||||.|||||.||.|||||||||||.|||||.||
RBAM_028820__ 247 GACCAGCTTATTATCGAAATTCTTGAGGACATACCGATCACTCCGGCACT 296
BSNT_04670___ 297 CATTTCTAGATGCAAAGAATTGAAAAAAATGGGGTATATGCTGGCGCTTG 346
|||.||.|||||||.|.|..||||.|||.|.||.||||...|.||.||||
RBAM_028820__ 297 CATCTCAAGATGCAGACAGCTGAAGAAATTAGGATATACATTAGCACTTG 346
BSNT_04670___ 347 ATGATTTTTATGCAATAAACCCGCAAGATGAGGACTTACTGGAAAAACTC 396
||||||||||.||.||.||.|||.||.||||.||.|||.|||||.|.||.
RBAM_028820__ 347 ATGATTTTTACGCCATCAATCCGGAAAATGAAGAGTTAGTGGAACAGCTG 396
BSNT_04670___ 397 ATGAGCTATATTGATATATTGAAAATTGATTTTCTCAAAACAACACGAAT 446
||||..|||||||||||.||.|||||.||||||.|..||.|..|.||..|
RBAM_028820__ 397 ATGAAATATATTGATATTTTAAAAATCGATTTTTTGCAATCCTCGCGTCT 446
BSNT_04670___ 447 GGAACGCAGAACAATTTTGCAAACCTACGGCTGCCGCGGCCTGATTTTTT 496
|||.||||.||.|||..|.||.||.|||.||||.....|.|||||||.||
RBAM_028820__ 447 GGAGCGCAAAAAAATCATTCAGACGTACAGCTGTAAAAGTCTGATTTATT 496
BSNT_04670___ 497 TAGCGGAAAAAGTAGAGACCCGAAAAGAATATAAACAGGCGGTCCA-AGA 545
|||||||.|||||.|||||..|||||||.||||||||||||| ||| |||
RBAM_028820__ 497 TAGCGGAGAAAGTGGAGACGAGAAAAGATTATAAACAGGCGG-CCATAGA 545
BSNT_04670___ 546 CGGCTTTCAATTATTCCAAGGCTACTTTTTCAGCGAGCCGCGCATCATCA 595
|||||||||..|.||.|||||.||.||||||||.||.|||||..||||||
RBAM_028820__ 546 CGGCTTTCACCTGTTTCAAGGATATTTTTTCAGTGAACCGCGTGTCATCA 595
BSNT_04670___ 596 GCGGGCATGACCTATCGACTCATTTCTATTCTTACTATGAACTGCTTAA- 644
||||..||||.||..||..||||||..||||||||||..|.|| .||||
RBAM_028820__ 596 GCGGAAATGATCTGACGTTTCATTTTCATTCTTACTACCAGCT-TTTAAG 644
BSNT_04670___ 645 CGAACTGAGTAAAGAGCAGCCTAACATAAAGCGTGTGACAGAGTACATAG 694
||||.|.|..||.||.|||||.||.|||.||||.|||||.||.|||||||
RBAM_028820__ 645 CGAATTAAACAATGACCAGCCCAATATACAGCGCGTGACGGAATACATAG 694
BSNT_04670___ 695 AGCGGGA------TTTATCACTGTCCTATCAAATTTTAAAATTTTTAAAC 738
||||||| .||| ||.|||||.|||.|....|||||||||
RBAM_028820__ 695 AGCGGGACGTCAGCTTA------TCGTATCAGATTCTGCGTTTTTTAAAC 738
BSNT_04670___ 739 TCATCCC--ACAGCCGTTTGAGCCAGAAA------ATTGAAAGCATTCAA 780
..|||.| ||| ||.|.|||| ||.||.|||||.||.
RBAM_028820__ 739 GGATCGCAAACA--------AGGCTGAAAAAAAAGATAGACAGCATCCAG 780
BSNT_04670___ 781 CAGGCCATTATGCTGCTGGGATTTAATGAAATCAAACGGTGGATATATAT 830
||||||||.|||.||||.||..|.|||||.||.||.||.|.|||.||.||
RBAM_028820__ 781 CAGGCCATCATGATGCTTGGGCTGAATGAGATTAAGCGCTTGATTTACAT 830
BSNT_04670___ 831 TCTTTCCTTTAAGGATTTAA--GCAGGAAAGGGCATTCCAGCAAGCACGA 878
||||||.||.|..||||||| || ||||.|.||.||.|||.|..|.||
RBAM_028820__ 831 TCTTTCATTCAGAGATTTAACGGC--GAAAAGCCACTCAAGCCAAAAAGA 878
BSNT_04670___ 879 AATCATTAAGATTTCTCTGATAAGAGCAAAGCTTTGCGAACTGTTGGCGA 928
|||||||||||||||..|.||.||.||.||.||.|||||||||.||||||
RBAM_028820__ 879 AATCATTAAGATTTCCTTAATCAGGGCCAAACTGTGCGAACTGCTGGCGA 928
BSNT_04670___ 929 GAAAGACATTCC----GGCCGCAGCCTGCTTCTTATATGCTGATCGGAAT 974
||||| .|| ||||.|||||..|||||||.|||||||||||.||
RBAM_028820__ 929 -AAAGA---ACCGGAAGGCCCCAGCCCTCTTCTTACATGCTGATCGGCAT 974
BSNT_04670___ 975 GTTTTCTCTCATAGACACCCTCCTGCATAGAGGA-ATAGAGGAAATTGTT 1023
||||||.|||||.||.||.||.||.||.|| ||| .|.|||||.||..|.
RBAM_028820__ 975 GTTTTCGCTCATCGATACGCTTCTTCACAG-GGAGCTGGAGGATATCATC 1023
BSNT_04670___ 1024 CAAGAATTGCCTTTAAAAGATGAAGTCGGGCAAGCATTATTAGGCCATCA 1073
.|||||.|||||||||..|||||||||||.||.||..|..|.||..||.|
RBAM_028820__ 1024 AAAGAACTGCCTTTAATCGATGAAGTCGGACAGGCGCTGCTCGGTTATGA 1073
BSNT_04670___ 1074 AAACGACTACTACCAAATGCTTGAGCTTGTGAAATTAATTGAAAGCAACA 1123
||||||.||.||..|.|||||.|.|.|.||.|||...||||||.||||||
RBAM_028820__ 1074 AAACGATTATTATAAGATGCTCGCGTTCGTCAAAGCCATTGAATGCAACA 1123
BSNT_04670___ 1124 ACTGGGAC----ACTTGCTCGGAATTAGGCAATCAACTCGACAAAGAAGA 1169
|||||||| || ||.|..||.||..||||..||||||||||
RBAM_028820__ 1124 ACTGGGACTGTGAC-------GAGTGGGGAAAAGAACTGAACAAAGAAGA 1166
BSNT_04670___ 1170 AGCGTATGAATGTTATCTT-GAGGCTCTGGAATGGTGTCATAATCTTATG 1218
||||||||||||||| ||| .||||..|.||||||||.|...|.||.||
RBAM_028820__ 1167 AGCGTATGAATGTTA-CTTACAGGCGATCGAATGGTGCCGGCAGCTGAT- 1214
BSNT_04670___ 1219 GACGCAAAATGA 1230
||...|.|||
RBAM_028820__ 1215 --CGTGGATTGA 1224
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