Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04664 and RBAM_028770
See
Amino acid alignment /
Visit
BSNT_04664 in genome browser /
Return to
Orthologue table
########################################
# Program: needle
# Rundate: Mon 8 Mar 2010 06:27:08
# Commandline: needle
# -asequence dna-align/BSNT_04664___comP.1.9828.seq
# -bsequence dna-align/RBAM_028770___comP.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04664___comP-RBAM_028770___comP.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04664___comP-RBAM_028770___comP.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04664___comP
# 2: RBAM_028770___comP
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 2510
# Identity: 1610/2510 (64.1%)
# Similarity: 1610/2510 (64.1%)
# Gaps: 406/2510 (16.2%)
# Score: 4849.0
#
#
#=======================================
BSNT_04664___ 1 --------ATGTACAGATA--TATTAACGTCTATAAATATTTGTCTCTAG 40
||.||.|.||| ||||....|.|||.|||.||..|| ||
RBAM_028770__ 1 ATGAAGTTATCTAAAAATACGTATTCCATTTTATTAATTTTACTC---AG 47
BSNT_04664___ 41 TTTTTATCATTTTAAGTTTTATTTATGTTATATACCTCTCGTATAGCTTT 90
.||.|.|.||.|| ||.||||||..|||||||..| |||.|
RBAM_028770__ 48 CTTGTCTTATATT---TTCTATTTAACTTATATAAAT---GTAAA----- 86
BSNT_04664___ 91 GCTTTTAACATCTTCGTAGG------TGCGGATGTAAAGATAA-ATGAA- 132
|||..|.||.||||| .||..||||.| |||| |.|||
RBAM_028770__ 87 -----TAATTTATTTGTAGGAGCCACCGCAAATGTTA--ATAATAAGAAT 129
BSNT_04664___ 133 CAGGGTAAGTTAGAGGTCACCAATGTTTTAGATTATACAGAT-GAATATT 181
|| || |||||.|.|||||.||.|.||||||.||| || |.|||||
RBAM_028770__ 130 CA----AA--TAGAGATTACCAAAGTATCAGATTACACA-ATGGCATATT 172
BSNT_04664___ 182 ATTCATGTGTGAAAAAGGGAGATATCATTCTTGAAGTAAATGGGGAGAAA 231
||.|..||||.|||||.||.||.||..|..||.||.|.|||..|.|.||.
RBAM_028770__ 173 ATGCTGGTGTTAAAAAAGGTGACATTGTAATTAAAATTAATCAGAATAAG 222
BSNT_04664___ 232 GGCAGTG-------ATATTCA-----------ATTAAAAAGTGGAAGATT 263
.||..|| |.|||.| |||.||||..|.||
RBAM_028770__ 223 AGCGTTGAACCAAAAGATTTAAAACAAAATACATTGAAAAACGTAA---- 268
BSNT_04664___ 264 GGTCAAT----GTAGAAAGTTTAAT-TGTTGAGAGAGATAATAAATCATT 308
||||.|| ||.||||| || ||.|||.|.|| |
RBAM_028770__ 269 GGTCTATGACAGTTGAAAG----ATCTGGTGAAATAG------------T 302
BSNT_04664___ 309 TCATTTACAAAATGTAAGCCTAATCAGTGAAGAAAATTTATTTATGTATC 358
|.||.|..|||||.||||..||.|.||||||||.||.||||||.|.|||.
RBAM_028770__ 303 TGATCTGAAAAATTTAAGTTTATTAAGTGAAGACAACTTATTTGTTTATT 352
BSNT_04664___ 359 TCATTCCTGTAATATCTTATTCAATCTGT-----TTATTTTGTATATTTT 403
|.||.||||| |||.||.||| |.||| ||| .||||||..|..
RBAM_028770__ 353 TAATACCTGT--TATTTTTTTC--TTTGTATGCCTTA-GTTGTATTATCC 397
BSNT_04664___ 404 TTATTTATAGAATAAATAA--AGTAAGAAAATCAACTTCTGCTTATATTT 451
||||||..|.|||.||||| ||.||| |.|||..|||.||||.|||.|
RBAM_028770__ 398 TTATTTTAAAAATTAATAAGGAGCAAG--ATTCAGTTTCAGCTTTTATAT 445
BSNT_04664___ 452 TAATTTTATTTTT----GTTATTTGTATCAGTAGCGTATGTAAGTGCATG 497
|.||..|.||||| ..||.|.||| ||||.|||||||||||..|
RBAM_028770__ 446 TGATCATCTTTTTACTCACTACTGGTA----TAGCATATGTAAGTGCGGG 491
BSNT_04664___ 498 TGGAGCAAGAAGAGGTGA-AGAGATAAGC----ACTTATCTGCTTGTTC- 541
.||..||..||.|||.|| |.| |||||| ||.||..|| ||
RBAM_028770__ 492 AGGTTCATCAAAAGGAGATATA-ATAAGCCGATACGTAAATG-----TCA 535
BSNT_04664___ 542 TTACTTTA--GTCAGTTGTCCGGT--GTTATATATTCATTTTATATATAA 587
|.|||||| .||.|| .||||| .||||.|.|| .|||||.|||.|
RBAM_028770__ 536 TAACTTTAATATCCGT--ACCGGTAAATTATCTCTT--GTTTATTTATCA 581
BSNT_04664___ 588 ATACTTTATAGAATTAGGA-ACAAAGTTATTCGAAAAG---AAGATTTTA 633
|||..|.|.||||||.||| ||||..||.|| ||.| |||.||||.
RBAM_028770__ 582 ATATATCAAAGAATTTGGATACAAGATTTTT---AACGGGAAAGTTTTTG 628
BSNT_04664___ 634 ATCATTATGTATATGC--TCCCGCTAATAAATCT----------TTTATT 671
.|..|| |||||.| ||||..|.||.|||.| |||.||
RBAM_028770__ 629 TTGCTT---TATATACAGTCCCTGTTATTAATATAATACTAGAGTTTTTT 675
BSNT_04664___ 672 ---------------AGAGGACGTTCTGAGTAA--------TAG-ATTAA 697
|||||| ||..||.|.|| ||| ||.||
RBAM_028770__ 676 AGGCATTGCTTTGAAAGAGGA-GTAGTGGGGAAAGTTAATTTAGTATCAA 724
BSNT_04664___ 698 AATCT-TCGGCTTTTTTGTCTAATCTGAATTTGATTTCATTTTTTGTCCT 746
.|||| || |||| |||||||..|.||.|||
RBAM_028770__ 725 TATCTCTC--CTTT--------------ATTTGATAGCTTTATTT----- 753
BSNT_04664___ 747 AGTTC-TTACTGTATCGATTCTTATCCATAAAGGGATAAGAAAATTTAAA 795
||| ||||||| |||..|||.|||.|..|||
RBAM_028770__ 754 --TTCATTACTGT------------------AGGTTTAATAAAGTACAAA 783
BSNT_04664___ 796 CAAAAAGAGCAA--AAGTCAATT-TTGAAAGTCCTTGCTTATACA--AAT 840
.|||.||||||| ||.| ||| || |||.|.||.|||.|| | |||
RBAM_028770__ 784 AAAACAGAGCAAGCAAAT--ATTCTT--AAGACTTTTCTTTTA-ATTAAT 828
BSNT_04664___ 841 ATCTTTTCTTTCAGTCCGTTTATTGTCTTTTTTGCTGTTCCATATGTG-- 888
||.|||.|||||...||.| ||||.||||| .||||||
RBAM_028770__ 829 ATTTTTGCTTTCTCACCAT---TTGTATTTTT---------GTATGTGGC 866
BSNT_04664___ 889 -----------TTTTT--CGAGAAGTATGTCTCACC--TTTTAGTTTGGC 923
||||| .||..|.|||||.||..| |||||||| ||
RBAM_028770__ 867 ACCCTACATCATTTTTAATGACTATTATGTTTCTTCTTTTTTAGTT--GC 914
BSNT_04664___ 924 TGCTTTTACACTTGTT-ATACCTTTTTCTTTAGTATATCAATTTATGACT 972
||.|||.|..||.|| ||.||||||||||||||.|||||||||||||||
RBAM_028770__ 915 -GCCTTTTCTTTTATTAATTCCTTTTTCTTTAGTTTATCAATTTATGACT 963
BSNT_04664___ 973 AATAGACTTTATAATATCGACTTTGTTGTGGGGCGGCTTAAGTACTACGG 1022
||||.|.|.|||.|.||.||.|||.||.|.||||||.|.||.||.||..|
RBAM_028770__ 964 AATAAAATCTATGAAATTGATTTTATTATTGGGCGGTTGAAATATTATAG 1013
BSNT_04664___ 1023 TTTTTTAGCCATTACACCTAC------TATTATCGTAGTGACCATCTTTA 1066
|.|||||||..|.||.||||| ||||| |.||.||.|.|.
RBAM_028770__ 1014 TCTTTTAGCTGTCACTCCTACTTTACTTATTA------TTACAATTTATG 1057
BSNT_04664___ 1067 AT----TACATTCAGCAACCAAAGGATATC----TTTTATTTAGTTAAAC 1108
|| |||| || |.||||| .|| ||||||....||||||
RBAM_028770__ 1058 ATCTTGTACA---AG-ATCCAAA----CTCAGAGTTTTATACGTTTAAAC 1099
BSNT_04664___ 1109 TAACAATTGC-AATATATGTTCTTATGTTTGCCGTTTTTTACTTTAAAGA 1157
|||| .|||| .|.||||.||.|||||||.||.||.|||||.|..|||||
RBAM_028770__ 1100 TAAC-TTTGCTGACATATATTATTATGTTGGCTGTGTTTTATTCAAAAGA 1148
BSNT_04664___ 1158 AATCATTGATTTTCGTTTCAAGTTGAAA-AGATTTACAGAGAAATTTAAT 1206
.|||.|.|||||||||||| .|||.||| .|.|||.|.||.|||..||||
RBAM_028770__ 1149 GATCTTAGATTTTCGTTTC-CGTTTAAAGCGTTTTTCTGAAAAACATAAT 1197
BSNT_04664___ 1207 TATCAAGATGGGATTTTTAAATTTACTCAGTTGATTAAGCAAGCATCATC 1256
|||||.||..|.||.||.||.||||||||..|.|||||...|||.|||||
RBAM_028770__ 1198 TATCAGGACAGCATATTCAAGTTTACTCAAATAATTAAAGGAGCTTCATC 1247
BSNT_04664___ 1257 AGTAGATCAAGTACTTAATCACT----TTAAAAATACAATCCTAGAAGTA 1302
..||.|.|||| ||.||||| ||.||..|||..|.||.|||||.
RBAM_028770__ 1248 CTTAAAGCAAG----TATTCACTGAACTTGAATCTACTCTACTTGAAGTT 1293
BSNT_04664___ 1303 TTAAACATAGATAATGCTTGCGT---GTATGATAATTCTAAAGG-----G 1344
| |.|||.|| .|| ||||| ..||.||.||| |
RBAM_028770__ 1294 T----------TGATGGTT-AGTAAAGTATG--TGTTTTAGAGGTAGAAG 1330
BSNT_04664___ 1345 GAAATCACCCTTCTTA---GTAA-GAACAACTTTAAAGAT-CTGACTTAT 1389
||.| |||| |||| |.|....|||||.||| .||| ..
RBAM_028770__ 1331 GAGA--------CTTAAATGTAAGGTATTTTTTTAATGATAATGA---GA 1369
BSNT_04664___ 1390 AAAAATCAT--GAGC-------------AATATGTGAAA----AATTTTT 1420
||||||.|| |||| |.||..||||| ||
RBAM_028770__ 1370 AAAAATTATGGGAGCTGTATTCTCATCAATTAGCTGAAACGACAA----- 1414
BSNT_04664___ 1421 CTGGTGATATCGGTAAAATTAAAGAGTTTA-----AACAAGGTTTTATTA 1465
||||.||.||.||.|| ||||.| |..||||.|||.|.|
RBAM_028770__ 1415 ---GTGAAATTGGCAAGAT-----AGTTCAGGTGGATAAAGGGTTTTTAA 1456
BSNT_04664___ 1466 TTAAAATAGGTGAACGAGGAGAC-AGATCATTTTTAGTACTCTGTTTCTC 1514
|.||||||||.||||| ||..|| |.|||||...|.|||||.|||||.||
RBAM_028770__ 1457 TGAAAATAGGGGAACG-GGGCACTAAATCATACATTGTACTGTGTTTATC 1505
BSNT_04664___ 1515 AAGTTAT-AATACTTTTAAGTTAACAAGGGATGAAATTGCATGGCTTCAA 1563
|.|||| ||||||...||..||||..|||||||.|||.|.|||.|..||
RBAM_028770__ 1506 -ATTTATGAATACTCCGAAACTAACTTGGGATGAGATTTCTTGGTTAAAA 1554
BSNT_04664___ 1564 ACATTAGCATTTTATACAAATGTCTCATTGGAAAACGTTATGAAAATCGA 1613
||.|||.||||.||.||.|.|.|..|..||||.||.||..|.||||||||
RBAM_028770__ 1555 ACCTTATCATTCTACACCAGTATTACGATGGAGAATGTGCTTAAAATCGA 1604
BSNT_04664___ 1614 AGAATTGATGGTGCATCTTGAGGATTTAAAACAACAAGAATCCAACCCCG 1663
||||.|.|||...|||||.||.||||||||..|||||||..|.|||||.|
RBAM_028770__ 1605 AGAACTTATGAATCATCTCGAAGATTTAAAGAAACAAGAGACAAACCCGG 1654
BSNT_04664___ 1664 TATGGCTCAAAAAACTCATGTACACGATCGAGGAAAAACAACGCTCGGAT 1713
|.|||||.|||||.||.||||..||||||||||||||.||.||.||||||
RBAM_028770__ 1655 TCTGGCTAAAAAAGCTGATGTTTACGATCGAGGAAAAGCAGCGTTCGGAT 1704
BSNT_04664___ 1714 CTCGCCCGCGATCTCCACGATTCGGTTCTTCAGGATTTGATTTCCTTAAA 1763
.|.|||||.|||||.||.|||||.||.||.|||||.||||||||.||.||
RBAM_028770__ 1705 TTGGCCCGTGATCTGCATGATTCAGTGCTGCAGGACTTGATTTCTTTGAA 1754
BSNT_04664___ 1764 ACGCCAGTGTGAGCTGTTTTTGGGTGATTTTAAGAAGGGTGATAATCCGT 1813
.||||||||||||||||||.|||..||||||||||| .||..|.||.|
RBAM_028770__ 1755 GCGCCAGTGTGAGCTGTTTCTGGCCGATTTTAAGAA---AGAGGAGCCTT 1801
BSNT_04664___ 1814 GCCGTGAAGAGGTGCAGGACAAGCTTGTACAGATGAATGAGCAGATGTCT 1863
|||....|||||||||||||||||||...||||||||||||||||||||.
RBAM_028770__ 1802 GCCACATAGAGGTGCAGGACAAGCTTCATCAGATGAATGAGCAGATGTCG 1851
BSNT_04664___ 1864 GATGTGATTTCGATGACGAGGGAGACGTGTCATGAGCTGCGGCCGCAGCT 1913
|||||.||||.||||||..||||||||||.||||||||.||.||.|||||
RBAM_028770__ 1852 GATGTCATTTTGATGACCCGGGAGACGTGCCATGAGCTTCGTCCTCAGCT 1901
BSNT_04664___ 1914 TCTGTATGATCTTGGG-CTGGTCAAGGCGCTGTCGAAGCTGGTGGCGCAG 1962
.||||||||| ||||| ||||||||||||.|.||.|||||.|..||.|||
RBAM_028770__ 1902 GCTGTATGAT-TTGGGCCTGGTCAAGGCGGTATCCAAGCTTGCCGCACAG 1950
BSNT_04664___ 1963 CAGCAGGAGCGGGTTCCGTTTCATATCCGTTTAAATACCGGGAGATTTAC 2012
|||||||||||.|..|||||||||||||||.|.|||||.||..|.|||||
RBAM_028770__ 1951 CAGCAGGAGCGTGCGCCGTTTCATATCCGTCTGAATACGGGCCGGTTTAC 2000
BSNT_04664___ 2013 GGCTTCCCTTGATCTGGATTCGCAGCTGAATTTGTACCGGATCATTCAAG 2062
|||..|.||.|||.|||||.|||||||||||||||||||.||.|||||.|
RBAM_028770__ 2001 GGCGGCGCTGGATTTGGATACGCAGCTGAATTTGTACCGCATTATTCAGG 2050
BSNT_04664___ 2063 AGTTTCTGTCTAATGCGGTCAAGCACTCTCAGGCGACGGATGTGCTGATT 2112
|.|||||.||.||.||..|.|||||.||.|||||||..||.|||||||||
RBAM_028770__ 2051 AATTTCTTTCGAACGCCATGAAGCATTCACAGGCGAATGAGGTGCTGATT 2100
BSNT_04664___ 2113 ATGCTCATCAGTATTCAAAACAAAATCGTTCTTCATTATGAGGATGATGG 2162
|||||.|||||.||||||||.|||.|..||||.||||||||.||.||.||
RBAM_028770__ 2101 ATGCTGATCAGCATTCAAAATAAAGTGATTCTGCATTATGAAGACGACGG 2150
BSNT_04664___ 2163 CGTAGGATTTGATCAGGAAAAGAATAC--TGAGCATTCCATGAGCATGGG 2210
.||.||.|...|||||| |||||..| .|.|||.||.|||||||||||
RBAM_028770__ 2151 TGTCGGCTGCAATCAGG--AAGAAGGCGGCGGGCAGTCGATGAGCATGGG 2198
BSNT_04664___ 2211 GCTTTCTGGCATTAAGGAGAGAGTCAGGGCTTTAGATGGGCGCCTTCGGA 2260
.|||||.||.|||||||||.|.|||.|.||..|.||.|| .||||
RBAM_028770__ 2199 TCTTTCGGGTATTAAGGAGCGCGTCCGTGCGCTTGACGG------ACGGA 2242
BSNT_04664___ 2261 TTGAA-------ACAAGTGAAGGAAAGGGCTTTAAGGCTGATATTGAAAT 2303
|||| ||||||||||||||.||.|||||.||.|||||||||||
RBAM_028770__ 2243 -TGAAAATCGACACAAGTGAAGGAAACGGTTTTAAAGCGGATATTGAAAT 2291
BSNT_04664___ 2304 CGAATTGTAA 2313
.|||||||||
RBAM_028770__ 2292 GGAATTGTAA 2301
#---------------------------------------
#---------------------------------------
Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.