Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04655 and RBAM_028710
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:27:07
# Commandline: needle
# -asequence dna-align/BSNT_04655___mrpD.1.9828.seq
# -bsequence dna-align/RBAM_028710___mrpD.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04655___mrpD-RBAM_028710___mrpD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04655___mrpD-RBAM_028710___mrpD.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04655___mrpD
# 2: RBAM_028710___mrpD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1511
# Identity: 1135/1511 (75.1%)
# Similarity: 1135/1511 (75.1%)
# Gaps: 40/1511 ( 2.6%)
# Score: 4130.5
#
#
#=======================================
BSNT_04655___ 1 ATGATCAACATGAATAATTTTGTTATTTTGCCAATCCTGATCCCGCT-TT 49
|||||||||||||||||.|||||.||.|||||.||.|||.|.||||| .|
RBAM_028710__ 1 ATGATCAACATGAATAACTTTGTGATATTGCCTATTCTGGTGCCGCTGCT 50
BSNT_04655___ 50 TGTCGGCTATTCTTCTGATTTTCATGACGAAGAACCTTATGCTCATGAGA 99
|| |.||..|.||.||||||||.||||..|.|.||.|.|||||.|||.|.
RBAM_028710__ 51 TG-CCGCAGTGCTGCTGATTTTTATGAACAGGCACGTGATGCTGATGCGG 99
BSNT_04655___ 100 ATCTTCAGCACGGCGGCATC------GGCCATCGGGATTGTGATTAGCGG 143
.|.||||||||.||.||.|| ..||||| ||.||.||||.
RBAM_028710__ 100 GTATTCAGCACTGCCGCTTCCTGTGTCTCCATC------GTCATCAGCGC 143
BSNT_04655___ 144 CATACTTGTACAGACTGTCTTCACAAAAGGTATCCAGACACTCAGCTTAG 193
|...||.||.|||||.||.||||||.|.||.||.|||||.||.|...|.|
RBAM_028710__ 144 CGCTCTCGTTCAGACGGTTTTCACACACGGGATTCAGACGCTGACACTCG 193
BSNT_04655___ 194 GCGGCTGGAAAGCGCCGTACGGCATTGTGCTTGCCGCAGACCAATTCGCC 243
|||||||||||||||||||||||||||||||.|||||.||.||..|.|||
RBAM_028710__ 194 GCGGCTGGAAAGCGCCGTACGGCATTGTGCTCGCCGCGGATCAGCTTGCC 243
BSNT_04655___ 244 AGC-CTGCTCGTTCTCACAACAGCGATCATCGGTTTATTGGTTGGGCTTT 292
|| |||||.|||.|.|||||.||.||.|||||..|..|.||....||.|
RBAM_028710__ 244 -GCACTGCTTGTTTTGACAACCGCCATAATCGGGCTGCTCGTCACCCTGT 292
BSNT_04655___ 293 ATTCCTTCCGTTCTGTCGGTGAAAAACGGGAGCGCTCCTTTTACTACTCC 342
|.||||||||.||..||||.||||||.||||||||.|.||.||.||.||.
RBAM_028710__ 293 ACTCCTTCCGCTCCATCGGAGAAAAAAGGGAGCGCGCTTTCTATTATTCA 342
BSNT_04655___ 343 GGCGTTCAG-TTCTTGCTTGCCGGCGTCAGCGGAGCGTTTTTAACAGGCG 391
||.||.||| ||||| ||.||||||||.||||||||||||||.||.||.|
RBAM_028710__ 343 GGGGTGCAGTTTCTT-CTGGCCGGCGTAAGCGGAGCGTTTTTGACGGGTG 391
BSNT_04655___ 392 ATTTATTTAATATGTACGTATTTTTTGAGCTTCTGCTTATTGCTTCCTAT 441
|..|.||.||.||||||||.||||||||||||||||||||.||.|||||.
RBAM_028710__ 392 ACCTGTTCAACATGTACGTCTTTTTTGAGCTTCTGCTTATCGCGTCCTAC 441
BSNT_04655___ 442 ATGCTGATTGTATTAGGCGGTACAAAAATTCAGCTGCTGGAATCCCTTAA 491
||||||||.||..|.|||||.||.||||||||..|....|||||..|.||
RBAM_028710__ 442 ATGCTGATCGTGCTTGGCGGAACGAAAATTCAATTAAGAGAATCATTGAA 491
BSNT_04655___ 492 ATATATCGTGTTTAATATCGTATCGTCTGCCCTGTTTGTCATAGGGGTCG 541
.||||||||||||||.||.||.||.||.||..|.||||||||.||.||||
RBAM_028710__ 492 GTATATCGTGTTTAACATTGTGTCATCCGCGTTTTTTGTCATCGGCGTCG 541
BSNT_04655___ 542 GCTTTTTATACGCTGTAACCGGCACGTTAAACATGGCGGATCTTAGCGTG 591
|.|..|||||.||.||.||.||||||.|.||.|||||.||.||.|||||.
RBAM_028710__ 542 GTTACTTATATGCGGTGACGGGCACGCTGAATATGGCTGACCTAAGCGTA 591
BSNT_04655___ 592 AAAATCAGCGAAACAGGACAAACCGGGCTGATCACTGTGATTGGTGTCCT 641
|||||.||||||.|.||.||.|||||||||||.||.||.||.||.|||||
RBAM_028710__ 592 AAAATAAGCGAATCGGGCCAGACCGGGCTGATAACCGTCATCGGCGTCCT 641
BSNT_04655___ 642 GATGCTTTTGGTATTTGGCATGAAGGGCGGAATCTTCCCCCTCTACTTTT 691
..|.||..|.||.||.||..|.||||||||.||.|||||.||.||.||.|
RBAM_028710__ 642 TCTTCTCGTCGTTTTCGGTTTAAAGGGCGGGATATTCCCGCTGTATTTCT 691
BSNT_04655___ 692 GGCTTCCAGGCTCTTATTACGCGCCACCGGCGGCAATCTCCGCGTTGTTC 741
||.|.||.||||||||||||||.||.|||||.||.||.||.||.||.|||
RBAM_028710__ 692 GGATGCCGGGCTCTTATTACGCCCCGCCGGCTGCGATTTCGGCCTTATTC 741
BSNT_04655___ 742 GG--CGCTTTGCTGACAAAAGTCGGGTTATATTCGATTGCGAGGGTTTTC 789
|| |.|||| ||||.||||||||..|.||..|.|||...||.||.|||
RBAM_028710__ 742 GGGTCTCTTT--TGACGAAAGTCGGCCTGTACGCCATTTTAAGAGTATTC 789
BSNT_04655___ 790 ACATTGATTTTTATTCACGATACAGCCTTTACCCATCAGCTGATGATTTG 839
||..||||.||||||||||||||.|.|||||||||.||..|||||||.||
RBAM_028710__ 790 ACCCTGATCTTTATTCACGATACGGGCTTTACCCACCAATTGATGATGTG 839
BSNT_04655___ 840 GCTGGCGGCGCTGACTGTGATTTTCGGTGTGATCGGTTCACTCGCTTATT 889
|||.|||..||||||.|||.|.|||||.||.|||||.||..||||.|.||
RBAM_028710__ 840 GCTTGCGATGCTGACGGTGTTATTCGGCGTAATCGGATCTATCGCCTTTT 889
BSNT_04655___ 890 CGAATGTCATGAAAATTGTGATCTATAACATTATTACCGCTGTCGGCGTG 939
||.|||||||||||||.||.|||||.||.||||||||.||.|||||||||
RBAM_028710__ 890 CGGATGTCATGAAAATCGTCATCTACAATATTATTACAGCCGTCGGCGTG 939
BSNT_04655___ 940 ATTTTGTTCGGTGTAGCAGTACACACCCCCGCATCCATTCAGGGCGCGAT 989
|||||||||||..|.||..|..||||.||.||.||||||||.||.|||.|
RBAM_028710__ 940 ATTTTGTTCGGCATTGCCATGAACACGCCGGCCTCCATTCAAGGAGCGGT 989
BSNT_04655___ 990 CTACTATCTGATTCACGATATGCTGATTAAGGGCGCTTTGTTTATGCTGG 1039
.||.||..||||||||||||||||||||||.||.||..||||||||||.|
RBAM_028710__ 990 TTATTACTTGATTCACGATATGCTGATTAAAGGAGCGCTGTTTATGCTCG 1039
BSNT_04655___ 1040 CGGGTACGCTGATCGCATTGACTGGAACTGCGAACCTGCATAAAATGGGC 1089
|.||.|||||.|||||.|||||.||.|||||.|.||||||||||||||||
RBAM_028710__ 1040 CCGGCACGCTTATCGCTTTGACAGGCACTGCCAGCCTGCATAAAATGGGC 1089
BSNT_04655___ 1090 GGGCTGATCAAACGCTATCCTGTTCTTGGATGGATGTTTTTCATTTCTGC 1139
||.|||||||..||.|||||.|||.|.|||||||||||.||.||.||.||
RBAM_028710__ 1090 GGACTGATCACCCGTTATCCCGTTTTGGGATGGATGTTCTTTATCTCAGC 1139
BSNT_04655___ 1140 TATTTCTCTTGCAGGCATTCCGCCACTGAGCGGATTTGTCGGCAAATTTA 1189
.||.|||||.||.|||||.|||||..|.|||||||||||.|||||..|.|
RBAM_028710__ 1140 CATATCTCTGGCCGGCATCCCGCCGTTCAGCGGATTTGTGGGCAAGCTGA 1189
BSNT_04655___ 1190 AAATTGCGGAGGGCGGCTTCGCAGAAGGTG---AATTTACGATATCCATG 1236
|.||.|||||.|||||.|||| |.||||.| |.||| |.|.|||.|.
RBAM_028710__ 1190 AGATCGCGGAAGGCGGGTTCG-ATAAGGGGGAAACTTT--GTTTTCCGTA 1236
BSNT_04655___ 1237 CTGATTCTGCTT-TCAAGTCTGCTCGTACTGTACTCTGTGCTGAGGATCT 1285
.||||||| ||| |||||.|||||.||.||.||.||.|||||||.|.|.|
RBAM_028710__ 1237 TTGATTCT-CTTATCAAGCCTGCTTGTGCTCTATTCCGTGCTGAAGGTTT 1285
BSNT_04655___ 1286 TTA-TACATGCGTTTTGGGGCGAAGAAAAAGAAA----CGCCAAAACCAA 1330
||| .|| .||.||||||||.||||||||||||| ||.|..|..|..
RBAM_028710__ 1286 TTACGAC-GGCTTTTTGGGGGGAAGAAAAAGAAATCCCCGGCGCAGGCGG 1334
BSNT_04655___ 1331 ATCATCGAACAGCTAAAGGACTTCTTTATCCGGCAGCTATTTTTCTCTTG 1380
| ||..|.||.|||||||||||||||||||||||...|||||||.|.
RBAM_028710__ 1335 A----CGGTCCGCAAAAGGACTTCTTTATCCGGCAGCCGCTTTTCTCCTT 1380
BSNT_04655___ 1381 CTGTCTCTTCTCTTCGGATTGGGTACAGAATGGGTGTCGCCTTACGTTGA 1430
.||||.|||||.|||||..|.||.||.||||||||.||.||.||.||..|
RBAM_028710__ 1381 TTGTCGCTTCTGTTCGGGCTCGGAACCGAATGGGTTTCACCGTATGTCAA 1430
BSNT_04655___ 1431 TCAAGCGGCCGAGACGCTGCTGAATCCGGAAAAATATATCGAAGCTGTTC 1480
|||..||||.||||..||||||||||||||||||||.||.|||||||||.
RBAM_028710__ 1431 TCAGACGGCTGAGAATCTGCTGAATCCGGAAAAATACATTGAAGCTGTTT 1480
BSNT_04655___ 1481 TGAAGGAGTAG 1491
|||||||||||
RBAM_028710__ 1481 TGAAGGAGTAG 1491
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