Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_04653 and RBAM_028700

See Amino acid alignment / Visit BSNT_04653 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:27:07
# Commandline: needle
#    -asequence dna-align/BSNT_04653___mrpC.1.9828.seq
#    -bsequence dna-align/RBAM_028700___mrpC.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04653___mrpC-RBAM_028700___mrpC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04653___mrpC-RBAM_028700___mrpC.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04653___mrpC
# 2: RBAM_028700___mrpC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 348
# Identity:     277/348 (79.6%)
# Similarity:   277/348 (79.6%)
# Gaps:          12/348 ( 3.4%)
# Score: 1105.0
# 
#
#=======================================

BSNT_04653___      1 ATGGAAATCTTAACGGCTGT-ATTAGCCGGTATTATTTTTATGGCTGCTA     49
                     .||||||||||||.|.|||| ||| |||||||||.|.||||||||.||.|
RBAM_028700__      1 GTGGAAATCTTAATGTCTGTCATT-GCCGGTATTTTGTTTATGGCGGCAA     49

BSNT_04653___     50 CGTATTTGCTGCTGTCTAAAAGCCTGCTTCGCGTCATTATCGGAACAGCA     99
                     |.||..|||||||.||||||||.|||||.|||||.||||||||.||.||.
RBAM_028700__     50 CCTACCTGCTGCTTTCTAAAAGTCTGCTGCGCGTGATTATCGGCACCGCG     99

BSNT_04653___    100 CTGTTAAGCCATGGCGTTCATTTAATGCTTTTGACTATGGGAGGATTAAA    149
                     ||.||||||||.|||||.|||||..|||||.||||.|||||.|||.|.||
RBAM_028700__    100 CTTTTAAGCCACGGCGTCCATTTGCTGCTTCTGACCATGGGCGGACTGAA    149

BSNT_04653___    150 GAAAGGCGCCGCTCCGATTTTGAGCG-----AGCATGCCAAATCATTTGT    194
                     .|||||||||.||||.||..||.|||     ||||.|     ||.|||||
RBAM_028700__    150 AAAAGGCGCCCCTCCCATACTGGGCGGAAAAAGCACG-----TCGTTTGT    194

BSNT_04653___    195 CGATCCGCTTCCGCAAGCCCTGATTTTGACCGCAATTGTCATTTCTTTTG    244
                     |||||||||.|||||.||.||.||..||||.||.||.||.|||||.||.|
RBAM_028700__    195 CGATCCGCTGCCGCAGGCACTCATACTGACGGCGATCGTTATTTCGTTCG    244

BSNT_04653___    245 GCGTTACATCATTCATCCTCGTTATGGCCTTTCGCGCTTATCAGGAATTG    294
                     ||||.||.||.|||.|.||.||.|||||.||||||||.|||||||||.||
RBAM_028700__    245 GCGTCACGTCCTTCCTGCTTGTGATGGCGTTTCGCGCCTATCAGGAACTG    294

BSNT_04653___    295 AAATCGGACGATATGGATCAAATGAGGGGAAATGATCAACATGAATAA    342
                     |||.|||||||||||||||.||||||||||||||||||||||||||||
RBAM_028700__    295 AAAACGGACGATATGGATCGAATGAGGGGAAATGATCAACATGAATAA    342


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