Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04651 and RBAM_028680
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########################################
# Program: needle
# Rundate: Mon 8 Mar 2010 06:27:07
# Commandline: needle
# -asequence dna-align/BSNT_04651___mrpA.1.9828.seq
# -bsequence dna-align/RBAM_028680___mrpA.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04651___mrpA-RBAM_028680___mrpA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04651___mrpA-RBAM_028680___mrpA.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04651___mrpA
# 2: RBAM_028680___mrpA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 2474
# Identity: 1860/2474 (75.2%)
# Similarity: 1860/2474 (75.2%)
# Gaps: 139/2474 ( 5.6%)
# Score: 6886.0
#
#
#=======================================
BSNT_04651___ 1 TTGCAGCTCTTACATCTTGCTATTTTATCGCCTTTTTTATTTGCTTTTAT 50
||||||||.||||||.|.||.|||||..||||||||||||||.|.|||||
RBAM_028680__ 1 TTGCAGCTGTTACATTTCGCGATTTTGGCGCCTTTTTTATTTACATTTAT 50
BSNT_04651___ 51 CATTCCC-TTCTTGGCAAAATAC--GCAAAAAGAGTGCATACGGGCTGGT 97
|.||||| ||||| .|.|.|| |.||||..|||.|||||.|||||||
RBAM_028680__ 51 CGTTCCCTTTCTT---TATAAACGGGTAAAACAAGTCCATACAGGCTGGT 97
BSNT_04651___ 98 TTGTGTTGATCCTGCCCGTCTTGCTGTTTATATACTTTCTCCCAATGATC 147
|||||.||||..|||||||..||||||||.|.|||||| |||
RBAM_028680__ 98 TTGTGCTGATAGTGCCCGTTGTGCTGTTTGTTTACTTT---------ATC 138
BSNT_04651___ 148 AGGA---------TGACACAGTCTGGAGAAACACTTCGATCGGTAT---- 184
||.| |.|||..|.||||.||||| ||..||||||
RBAM_028680__ 139 AGCAAGCTCCCTGTAACAATGGCTGGGGAAAC----CGTCCGGTATGCGG 184
BSNT_04651___ 185 TAGAGTGGATTCCGTCACTCGGCATTAACTTTACCGTTTATATAGACGGC 234
..||.|||||||||||.|||||.|||||||.||||||||||.|.|||||.
RBAM_028680__ 185 CCGAATGGATTCCGTCCCTCGGTATTAACTATACCGTTTATCTTGACGGA 234
BSNT_04651___ 235 CTCGGGTTATTATTCGCTTTACTGATCACAGGCATTGGCTCTTTGGTCAC 284
||||||.|.||||||||||||.||||.||.|||||.||||||||.||.||
RBAM_028680__ 235 CTCGGGCTGTTATTCGCTTTATTGATTACGGGCATCGGCTCTTTAGTGAC 284
BSNT_04651___ 285 TCTTTACAGCATTTTTTATTTATCGAAAGAAAAAGAACAGCTTGGGCCCT 334
.||||||||.||||||||.||||||||.||.||||||.||||.||.||||
RBAM_028680__ 285 GCTTTACAGTATTTTTTACTTATCGAAGGACAAAGAAAAGCTCGGCCCCT 334
BSNT_04651___ 335 TTTATGTCTACTTATTGATGTTCATGGGCGCCATGCTCGGTGTCGTTCTA 384
|||||||.|||.|..|||||||.||||||||.||||||||.||.||.||.
RBAM_028680__ 335 TTTATGTGTACCTGCTGATGTTTATGGGCGCGATGCTCGGCGTTGTGCTC 384
BSNT_04651___ 385 GTAGACAATGTCATGGTTCTCTACATGTTCTGGGAGCTTACAAGCCTTTC 434
||.||.||.|||||.||.||.||.||||||||||||||.||||||||.||
RBAM_028680__ 385 GTCGATAACGTCATCGTGCTTTATATGTTCTGGGAGCTGACAAGCCTGTC 434
BSNT_04651___ 435 ATCCTTTTTGCTGATCGGCTATTGGTATAAGCGGGAAAAGTCGCGCTATG 484
||||||.||..|.|||||.||||||.||||||||.|.||.||.|||||.|
RBAM_028680__ 435 ATCCTTCTTATTAATCGGGTATTGGCATAAGCGGAAGAAATCACGCTACG 484
BSNT_04651___ 485 GCGCAGCCAAATCACTTTTGATTACGGTCAGCGGCGGGCTGTGCATGCTC 534
|.||.|..||.|||||..|||||||.|||.||||||||||||||||||||
RBAM_028680__ 485 GGGCGGAAAAGTCACTGCTGATTACCGTCGGCGGCGGGCTGTGCATGCTC 534
BSNT_04651___ 535 GGCGGATTTATTCTCCTTTATTTGATAACGGATTCCTTCAGTATTCGAGA 584
|||||.|||||.||.||.|||.||||.||||||||.|||||||||.|.||
RBAM_028680__ 535 GGCGGCTTTATCCTGCTGTATCTGATGACGGATTCTTTCAGTATTAGGGA 584
BSNT_04651___ 585 GATGGTTCATCAGGTTCA-ATTAATTGCCGGCCA--CGAATTGTTTATCC 631
.|||||..|.|||||.|| ||| ||.||.||||| || ||.|||||.|
RBAM_028680__ 585 AATGGTCAACCAGGTGCATATT-ATCGCAGGCCATCCG--TTCTTTATTC 631
BSNT_04651___ 632 CGGCTATGATTCTCATTTTATTAGGGGCTTTTACGAAATCAGCGCAATTT 681
||||.|||.|||||.|.|||||.|||||||||||||||||||||||.|||
RBAM_028680__ 632 CGGCGATGGTTCTCCTGTTATTGGGGGCTTTTACGAAATCAGCGCAGTTT 681
BSNT_04651___ 682 CCTTTTTACATCTGGCTCCCTGACGCGATGGAAGCTCCGACGCCTGTCAG 731
||.|||||.||||||||.|||||.||.|||||.||.|||||.||||||||
RBAM_028680__ 682 CCGTTTTATATCTGGCTGCCTGATGCCATGGAGGCGCCGACTCCTGTCAG 731
BSNT_04651___ 732 CGCTTATCTCCATTCAGCTACTATGGTAAAAGCCGGCATTTATGTGATTG 781
|||.|||||.||.||.|||||.|||||.|||||.||||||||||||||||
RBAM_028680__ 732 CGCCTATCTGCACTCGGCTACAATGGTGAAAGCGGGCATTTATGTGATTG 781
BSNT_04651___ 782 CGAGATTCAGTCCTATTTTCGCCTTTTCAGC--TCAGTGGTTTTGGATCG 829
|.|||||||||||..||||.||.||||||.| || |||||||||| ||
RBAM_028680__ 782 CCAGATTCAGTCCGGTTTTTGCATTTTCACCCGTC--TGGTTTTGGA-CG 828
BSNT_04651___ 830 TGTCCCTC-GTTGGCCTCTTTACGATGGTTTGGGGTTCATTCCATGCCGT 878
..|.|||| ||.||.||..|.||||||||.||||.|||.||..||||..|
RBAM_028680__ 829 GTTGCCTCAGTCGGTCTGATCACGATGGTATGGGCTTCCTTTAATGCGAT 878
BSNT_04651___ 879 GAAACAAACTGATTTAAAATCGATTTTGGCGTTTTCAACCGTCAGCCAGC 928
|||||||||.|||||||||.|||||.||||.|||||.||.||||||||||
RBAM_028680__ 879 GAAACAAACCGATTTAAAAGCGATTCTGGCATTTTCCACAGTCAGCCAGC 928
BSNT_04651___ 929 TCGGCATGATCATCTCCATGCTCGGAGTCA-GTGCTGCGGCCCTTCATTA 977
||||.|||||..|.||.||||||||.| || |.||.||.||.||||||||
RBAM_028680__ 929 TCGGTATGATTGTATCGATGCTCGGCG-CAGGAGCCGCCGCGCTTCATTA 977
BSNT_04651___ 978 TGGCCATACAGAATATTATACAGTTGCCGCTAT------GGCTGCCATTT 1021
....|||.||||.||||.||| .||.|||.| ||||| |.|
RBAM_028680__ 978 CCAGCATTCAGAGTATTTTAC---GGCGGCTGTCACCGCGGCTG---TGT 1021
BSNT_04651___ 1022 TCCATTTGATCAACCACGCAACCTTTAAAGGAAGCTTGTTTATGGCAGTC 1071
|.||.||.||.|||||.||.||.|||||||||||.||.||||||||.|||
RBAM_028680__ 1022 TTCACTTAATTAACCATGCTACTTTTAAAGGAAGTTTATTTATGGCGGTC 1071
BSNT_04651___ 1072 GGGATTATCGATCACGAAACAGGCACACGGGATATCCGGAAGCTAGGCGG 1121
||.||||||||.||.|||||.||.||||||||.|||||.|.|||.|||||
RBAM_028680__ 1072 GGCATTATCGACCATGAAACGGGAACACGGGACATCCGCAGGCTCGGCGG 1121
BSNT_04651___ 1122 CCTGATGGCGATTATGCCGATTACATTTACCATTTCCTTAATCGGGACAT 1171
||||||||||.||||||||.|.||.||.|||.||||..|.|||||.||.|
RBAM_028680__ 1122 CCTGATGGCGCTTATGCCGGTAACGTTCACCGTTTCACTGATCGGAACGT 1171
BSNT_04651___ 1172 TTTCAATGGCCGGCCTACCGCCGTTTAACGGATTTTTGAGTAAAGAAATG 1221
||||.|||||.|||||.||.|||||||||||.|||||.||||||||||||
RBAM_028680__ 1172 TTTCCATGGCGGGCCTCCCTCCGTTTAACGGCTTTTTAAGTAAAGAAATG 1221
BSNT_04651___ 1222 TTTTTCACAAGCATGCTTCG-------CGTGACACATTTTGACCTGTTCA 1264
||.||.|||||.|||||.|| |.|| ||.||.|| ||||
RBAM_028680__ 1222 TTCTTTACAAGTATGCTGCGGATTGCTCATG-CAGATATT------TTCA 1264
BSNT_04651___ 1265 ACGTGCAGACATGGGGCGTTCTGTTCCCTCTTTTCGCCTGGATCGGAAGT 1314
...||.|.||.||||||||.||||||||..||.||||.||||||||.||.
RBAM_028680__ 1265 GTCTGGATACGTGGGGCGTGCTGTTCCCCGTTCTCGCATGGATCGGGAGC 1314
BSNT_04651___ 1315 GTATTTACGTTTATCTACAGCATGAAATTGCTGTTT---AAAACATTCAG 1361
||.||.||.||.|||||||||||||| ||||||| |.|||.|||||
RBAM_028680__ 1315 GTCTTCACTTTCATCTACAGCATGAA---GCTGTTTTTCAGAACGTTCAG 1361
BSNT_04651___ 1362 AGG-------AAATTACCAGCCTGAACAGCTTGAAAAACCGGCTCACGAG 1404
.|| ||| |||||.|||||||||||..||.|.||.||.
RBAM_028680__ 1362 CGGCGCGCGCAAA-------CCTGATCAGCTTGAAAAGACGCCGCATGAA 1404
BSNT_04651___ 1405 GCGCCTGTCGGCATGCTCGTACCACCGGTCATTCTTGTCGCTTTGGCTGT 1454
||.||..||||||||||..|..|.|||||||||||||.|||||..||.||
RBAM_028680__ 1405 GCTCCGCTCGGCATGCTGATTTCGCCGGTCATTCTTGCCGCTTGCGCCGT 1454
BSNT_04651___ 1455 CAGTCTCTTCTTTTTC-CCGAATATATTGTCGTACAGCCTGATAGAGCCT 1503
||||||.|| ||||.| |||||..|.|||||.|||||||||||.||.||.
RBAM_028680__ 1455 CAGTCTGTT-TTTTGCACCGAACGTTTTGTCTTACAGCCTGATTGAACCG 1503
BSNT_04651___ 1504 GCGATGAACTCAATCTATCCGACACTGCTTGCCGGCCATGAGAAATTCCA 1553
|||||||||||.||.||||||.|.|||.|..|||||...||.|.||||||
RBAM_028680__ 1504 GCGATGAACTCCATTTATCCGGCTCTGTTAACCGGCGGAGATACATTCCA 1553
BSNT_04651___ 1554 CGTTCACATTTCACAGTGGCATGGGGTTACAACGGAATTGCTCATGA--- 1600
.|||||.|||||.||||||||.|||||.||..|.|| |||.||||
RBAM_028680__ 1554 TGTTCATATTTCCCAGTGGCACGGGGTGACGGCTGA---GCTAATGATGA 1600
BSNT_04651___ 1601 --CTGCGGGTATTGTTGTGATCGGAACAATTGGTTATTTGTCGCTGAATA 1648
|| .|||||..|..|..||||.||.||.|||||..|..|||||..||
RBAM_028680__ 1601 CCCT--CGGTATCATCATTGTCGGCACGATCGGTTACGTAACGCTGTCTA 1648
BSNT_04651___ 1649 AGTGGAAAGGAATCTATAAACTGTTTCCTTCGAAACTCACACTCAACCGG 1698
|.|||.|..|..|.||....||||||||....|||||.||.||.|||..|
RBAM_028680__ 1649 AATGGGAGCGTTTGTACGGTCTGTTTCCGAAAAAACTGACGCTGAACAAG 1698
BSNT_04651___ 1699 TTATACGATAAGCTTTTGAC--TCTG-ATGGAGAAAGGCTCTTACCGGAT 1745
.|.||||||..| .|||| .|.| |||||.|||.|.|||||||.|.|
RBAM_028680__ 1699 CTTTACGATGCG---GTGACGGGCAGTATGGAAAAAAGATCTTACCAGCT 1745
BSNT_04651___ 1746 CACAAAACAATATATGACCGGGTTTTTAAGAGATTATTTGCTGTATATCT 1795
.||...|...|||||||||||.|||||..|.||||||.||||||||||||
RBAM_028680__ 1746 GACGTCATCGTATATGACCGGATTTTTGCGGGATTATCTGCTGTATATCT 1795
BSNT_04651___ 1796 TCGCTG-GTTTCATCATTCTGATAGGCGGA---GCTTTTGCCATTAAAGG 1841
|.||.| |||| ||||||||.|| |||| ||.||.|.||..|||||
RBAM_028680__ 1796 TTGCGGCGTTT-ATCATTCTCAT---CGGAACGGCGTTCGTCACAAAAGG 1841
BSNT_04651___ 1842 CGGATTTTCATTTAAAACGGAAGGCATGGCTAAAATCGG--TGTATACGA 1889
|||.|||||..|.|.|.||.|||||||||||.||||||| ||||| ||
RBAM_028680__ 1842 CGGCTTTTCCATGACAGCGAAAGGCATGGCTGAAATCGGCCTGTAT--GA 1889
BSNT_04651___ 1890 AATCATTTTGACGCTTGTCATGATCAGCGCCACAGTGGCGACTGTTTTTG 1939
||||.|..||.|.||.||.|||.|.|||||.||..|.||||||||.||.|
RBAM_028680__ 1890 AATCGTGCTGTCCCTCGTTATGGTGAGCGCAACGATTGCGACTGTGTTCG 1939
BSNT_04651___ 1940 CTAGGTCAAGACTGACGGCGATCATTGCACTCGGTGTTGTCGGTTATACG 1989
|.|..||..|.||||||||.||.||..||||||||||||||||.||.||.
RBAM_028680__ 1940 CCAAATCGCGGCTGACGGCCATTATCTCACTCGGTGTTGTCGGGTACACA 1989
BSNT_04651___ 1990 CTTGCATTGTTTTTTGTCATTTTCAGAGCGCCGGATTTGGCATTGACCCA 2039
||.||..|||||||.||.||||||||||||||.|||.||||..|.||.||
RBAM_028680__ 1990 CTCGCGCTGTTTTTCGTGATTTTCAGAGCGCCCGATCTGGCGCTCACGCA 2039
BSNT_04651___ 2040 GCTCGTCATTGAAACGATTTCTGTGGCACTGTTTCTGCTTTGCTTCTACC 2089
||||||||||||.|||||.||.||.||..|||||||.|||||.||.||||
RBAM_028680__ 2040 GCTCGTCATTGAGACGATATCCGTCGCCTTGTTTCTTCTTTGTTTTTACC 2089
BSNT_04651___ 2090 ATTTGCCGAAACTGAGGCTGAAAACA-AAAACGAGAACGTTCCGGATGAC 2138
||.||||||||.||.||| |||||.| ||.||.|||||.|||||||||||
RBAM_028680__ 2090 ATCTGCCGAAAATGCGGC-GAAAAAAGAAGACAAGAACATTCCGGATGAC 2138
BSNT_04651___ 2139 GAATTTTATCATTTCTTTAGGCGTCGGTATTATTGTTACTCTGCTTGGTA 2188
||||||||||||||||.|.||.|||||..|.||.||.||..||||.||.|
RBAM_028680__ 2139 GAATTTTATCATTTCTCTCGGTGTCGGCGTCATCGTGACAATGCTCGGAA 2188
BSNT_04651___ 2189 TCGCATCCTCAAGCCAACGGACAAAAGACAGCATTGCGTCCTTCTTTGTC 2238
||||.||.||.|||.||...|||||||||||||| .||||.||||.||
RBAM_028680__ 2189 TCGCGTCTTCCAGCGAAAAAACAAAAGACAGCAT---CTCCTCCTTTTTC 2235
BSNT_04651___ 2239 AAAC-----ACAGCCACGATCTCGGCGGAGGGGATAATGTCGTCAATGTC 2283
|| |||||||..|.|||||.|||||..|.|||.|||||||.|||
RBAM_028680__ 2236 --ACCGCTTACAGCCATAAGCTCGGGGGAGGAAACAATATCGTCAACGTC 2283
BSNT_04651___ 2284 ATTCTTGTTGATTTCAGGGGATTTGATACAATGTTTGAAATTACGGTATT 2333
||.||.|||||||||||||||||||||||.|||||||||||.|||||..|
RBAM_028680__ 2284 ATCCTCGTTGATTTCAGGGGATTTGATACGATGTTTGAAATCACGGTGCT 2333
BSNT_04651___ 2334 AACAATAGCCGCTCTCGGCATTTACAGCATGATTAAAACAAAAGTAAAAG 2383
..|.||.|||||.|||||.||||||.|||||||.|.|||.||||||||||
RBAM_028680__ 2334 GTCGATTGCCGCACTCGGGATTTACGGCATGATCAGAACGAAAGTAAAAG 2383
BSNT_04651___ 2384 AGGAGGG-GAAAAGCGGTGAATGA 2406
||||||| |||.||||.|||
RBAM_028680__ 2384 AGGAGGGAGAAGAGCGTTGA---- 2403
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