Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04642 and RBAM_028620
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:27:06
# Commandline: needle
# -asequence dna-align/BSNT_04642___dcuS.1.9828.seq
# -bsequence dna-align/RBAM_028620___yufL.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04642___dcuS-RBAM_028620___yufL.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04642___dcuS-RBAM_028620___yufL.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04642___dcuS
# 2: RBAM_028620___yufL
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1648
# Identity: 1223/1648 (74.2%)
# Similarity: 1223/1648 (74.2%)
# Gaps: 92/1648 ( 5.6%)
# Score: 4357.0
#
#
#=======================================
BSNT_04642___ 1 ATGAAAAAAACATTAAAACTGCAAACCAGACTCACCATATTTGTTTGTAT 50
||||||||||||||||||.||||||||.||.|.||.||.||.||.|||||
RBAM_028620__ 1 ATGAAAAAAACATTAAAATTGCAAACCCGATTAACGATTTTCGTCTGTAT 50
BSNT_04642___ 51 CGTTGTATTAATCGCA--TTGCTCATTACGTTTTTTACAGTCGGTGCCCA 98
.||.||..|.|||||| ||| .||.||.|||||.||..||.|.|.|||
RBAM_028620__ 51 TGTCGTCCTTATCGCACTTTG--TATCACCTTTTTCACGATCAGCGTCCA 98
BSNT_04642___ 99 AACCACCAAAC-----GAATTAGAGATCAGGAAAAGGCCACTGCGCTGCA 143
|| ||.||.|| ||| |||..|.|||..|.|.||.|||||||.
RBAM_028620__ 99 AA-CAGCAGACCGCGTGAA----AGAAGAAGAACGGACGACCGCGCTGCG 143
BSNT_04642___ 144 GACTGCTGAAA--TGGTAGCTGAGGCGCCGA-TGACAGCCGC-TGCTTTA 189
.||.|| ||| ||||.||.||..|.|||| ||.| .||| .||.||
RBAM_028620__ 144 CACCGC--AAAGCTGGTCGCGGAAACACCGAGTGTC--GCGCGGGCATT- 188
BSNT_04642___ 190 GAAAGCGGAAAAAAACAAAAGGAACTG-CAGAGC----------TACACA 228
|.|||.||.|||||| .||| .||||| ||||..
RBAM_028620__ 189 -------GCAAACAAGAAAAGG-GCTGAAAGAGCTCCGGGATTATACATT 230
BSNT_04642___ 229 AAGCGGGTTCAGAAAATTACCGGCACGGAATTTGTTGTCGTCATGGATAT 278
|..| ||.|||.|.|..||.||.||.||||||||.||.||.||||||||
RBAM_028620__ 231 AGAC--GTCCAGCATACGACAGGAACCGAATTTGTCGTGGTGATGGATAT 278
BSNT_04642___ 279 GAACGGTATCCGCAAAACTCATCCTGACCCGAGCAAAATCGGAAAAAAAT 328
||||.|.||||||...||.||.||.|||.|.|..||||||||.||.||||
RBAM_028620__ 279 GAACAGCATCCGCCTCACCCACCCCGACGCAAATAAAATCGGGAAGAAAT 328
BSNT_04642___ 329 TCAGAGGCGGTGATG---AGTC--CGAGGTATTAAAAGGGCATGTCCATA 373
|||..|||||.|||| ||.| ||| |..|.||||||.||.|.|
RBAM_028620__ 329 TCACCGGCGGAGATGAACAGCCGGCGA-----TGCACGGGCATATCAAAA 373
BSNT_04642___ 374 TCAGCACAGCCTCTGGCACGCTCGGGAAATCGCA-GAGAGCGTTCGTCCC 422
..||||||.|..|.||.||.|||||.||||| || ||||||.|||||.||
RBAM_028620__ 374 CGAGCACATCAGCGGGAACTCTCGGAAAATC-CATGAGAGCCTTCGTACC 422
BSNT_04642___ 423 TGTCTACGCGGAGA--ATGGAAAACAGGTCGGTGCAGTCGCGGTCGGCAT 470
..|||| .|||.| ||..||||||.||.||.|..||..|||||||.||
RBAM_028620__ 423 GATCTA--TGGAAAAGATAAAAAACAAGTGGGCGTCGTTTCGGTCGGAAT 470
BSNT_04642___ 471 CACCGTAAATGAAATTGATGAAGTGATCAGCCATAGCTTACGGCCGCTTT 520
..|..|.||..||||..|.||.||..|||||||.||.||..|.|||||||
RBAM_028620__ 471 TTCGCTTAACAAAATACAGGATGTCGTCAGCCACAGTTTGAGACCGCTTT 520
BSNT_04642___ 521 ACTTTATTATTTGCGTCAGCATCTTCGTCGGTGTGATCGGAGCCGTTATC 570
|.||.||.||.|||||.||.||.||.|||||.||.|||||||||||.||.
RBAM_028620__ 521 ATTTCATCATCTGCGTAAGTATTTTTGTCGGCGTCATCGGAGCCGTCATT 570
BSNT_04642___ 571 GTCGCCCGTACAGTGAAAAATATCATGTACGGACTTGAACCTTATGAAAT 620
||||||||.||.||.|||||.||.||||||||.|||||.||||||||.||
RBAM_028620__ 571 GTCGCCCGCACCGTCAAAAACATTATGTACGGTCTTGAGCCTTATGAGAT 620
BSNT_04642___ 621 TGCGACTCTGCTTGAAGAACGGAGCGCGATGCTGGAATCGACGAAGGAAG 670
.||.||.||.||.|||||.||||||||.|||||.|||||.||||||||||
RBAM_028620__ 621 CGCCACCCTCCTCGAAGAGCGGAGCGCCATGCTCGAATCAACGAAGGAAG 670
BSNT_04642___ 671 GAATACTCGCTGTCGATGAACATGGCAAAATTAAACTTGCCAACGCGGAA 720
|.||.||.||.||.||.|..|..||.|||||.||.||.|||||.||||||
RBAM_028620__ 671 GCATTCTGGCGGTTGACGCGCGGGGAAAAATCAAGCTCGCCAATGCGGAA 720
BSNT_04642___ 721 GCAAAACACCTATTCGTCAAAATGGGCATCAACACAAATCCCATTGATCA 770
||.||||..||.||..|.||||||||.||....||.|||||..|.|||||
RBAM_028620__ 721 GCGAAACGGCTTTTTATTAAAATGGGTATTCCGACTAATCCGGTCGATCA 770
BSNT_04642___ 771 GGATGTAGATGACATCTTGCCGAAAAGCCGCTTGAAAAAGGTCATTGAGA 820
.|||||..|.||.||..|.|||||||||||..|||||.|.||.|||||.|
RBAM_028620__ 771 AGATGTGAACGATATTCTCCCGAAAAGCCGGCTGAAACAAGTGATTGAAA 820
BSNT_04642___ 821 CAAAAAAACCTCTTCAAGACAGAGACGTCCGCATTAACGGACTGGAGCTT 870
|.||||||||.|||||.|||||.||..|||||||||||||.||.|||||.
RBAM_028620__ 821 CGAAAAAACCGCTTCAGGACAGGGATATCCGCATTAACGGGCTTGAGCTG 870
BSNT_04642___ 871 GTGTTTAATGAAGTTCCTATCCAGCTGAAAGGACAAACTGTCGGAGCGAT 920
||.||||||||.|||||.||.||.||||||||||||||.|||||||||||
RBAM_028620__ 871 GTCTTTAATGAGGTTCCGATTCATCTGAAAGGACAAACCGTCGGAGCGAT 920
BSNT_04642___ 921 TGCAACATTCCGCGACAAGACCGAGGTAAAACATTTAGCTGAACAGCTTT 970
.||.||.|||.|.|||||.||.|||||.|||||||||||.||||||||.|
RBAM_028620__ 921 CGCCACGTTCAGGGACAAAACGGAGGTCAAACATTTAGCAGAACAGCTGT 970
BSNT_04642___ 971 CCGGTGTTAAAATGTATGCAAACGCACTGAGAGCGCAGTCTCATGAATTT 1020
||||||||||||||||||||||||||.|.|||||.||||||||||||||.
RBAM_028620__ 971 CCGGTGTTAAAATGTATGCAAACGCATTAAGAGCCCAGTCTCATGAATTC 1020
BSNT_04642___ 1021 ATGAACAAACTGCATGTGATATTAGGTCTCGTCCAGCTGAAAGAGTATGA 1070
|||||.||.||.|||||.||.|||||.||.||||||.|.|||||.||.||
RBAM_028620__ 1021 ATGAATAAGCTTCATGTTATTTTAGGGCTTGTCCAGTTAAAAGAATACGA 1070
BSNT_04642___ 1071 TGATCTTGGAGATTATATTAAAGATATAGCCATACAGCAAAAATCAGAAA 1120
||||||.||...|||.||||||||.||.|||||.|||||.||..|.||||
RBAM_028620__ 1071 TGATCTCGGCACTTACATTAAAGACATTGCCATTCAGCAGAAGACGGAAA 1120
BSNT_04642___ 1121 CAAGTGAAATTATAAATGATGTCAAAAGCTCC-GTACTGGCCGGTTTTCT 1169
||||.||.|||||||.|||||||||||| ||| ||.||.||.||.|||||
RBAM_028620__ 1121 CAAGCGAGATTATAAGTGATGTCAAAAG-TCCGGTTCTCGCAGGGTTTCT 1169
BSNT_04642___ 1170 GCTCGGAAAGCAAAGCTTTATACGTGAGCAGGGCGCAAATCTTGATATTG 1219
.||.|||||.|||||||..|||||.||.||||||||..||||.||.|||.
RBAM_028620__ 1170 TCTAGGAAAACAAAGCTACATACGCGAACAGGGCGCTGATCTGGACATTC 1219
BSNT_04642___ 1220 AATGCAACGG-----TGTCATCCCGAACGCGGCAGACCCTTCTGTCATCC 1264
| || .||| || ||||||||.||||||||.||..|.|||||||
RBAM_028620__ 1220 A--GC-TCGGCAGCCTG--ATCCCGAATGCGGCAGATCCGGCCGTCATCC 1264
BSNT_04642___ 1265 ATGAACTTATTACAATCATCGGAAATCTCATCAACAATG-GCTTAGACGC 1313
||||.||||||||.||.||||||||.||..|.|||||.| || |.|||||
RBAM_028620__ 1265 ATGAGCTTATTACGATTATCGGAAACCTGTTAAACAACGCGC-TCGACGC 1313
BSNT_04642___ 1314 CGTTGCGGATATGCCGAAAAAACAAATCACCATG-TCCATGCGCTTCCAT 1362
.||.|||.|.||||||||||||.|.||.| |.|| ||.|||||.||.||.
RBAM_028620__ 1314 GGTGGCGCAGATGCCGAAAAAAAACATTA-CGTGCTCGATGCGGTTTCAG 1362
BSNT_04642___ 1363 AA----CAGCATACTTGATATTGAAATTACCGATACTGGAGCAGGCATGT 1408
.| ||| ||||||||.||.|||||.||.||.|||||.||.||||
RBAM_028620__ 1363 GATCGCCAG----CTTGATATAGAGATTACGGACACGGGAGCCGGAATGT 1408
BSNT_04642___ 1409 CTGAAGAAGACCAAGCCAAAGTA--TTTGAACAAGGCTATTCAAC-AAAG 1455
|||..|.|||||||||| .||| |||||||||||.|||||.|| ||||
RBAM_028620__ 1409 CTGCGGCAGACCAAGCC--CGTATTTTTGAACAAGGTTATTCCACGAAAG 1456
BSNT_04642___ 1456 GGCAAAAACCGGGGATTCGGCCTTTATTTCACACAGCAAAGCATC-GAAA 1504
|| |.|||||||||.||||||||.||||||||.|||| |.|||.| ||||
RBAM_028620__ 1457 GG-ACAAACCGGGGGTTCGGCCTCTATTTCACCCAGC-AGGCAACAGAAA 1504
BSNT_04642___ 1505 ATTTAAAAGGCCAAATGATCCTCACAAGCGAAAAGAATGAAGGAACGACA 1554
|||||||||||||.|||||..|.|||||.||||||||||||||||||||.
RBAM_028620__ 1505 ATTTAAAAGGCCATATGATTGTGACAAGTGAAAAGAATGAAGGAACGACT 1554
BSNT_04642___ 1555 TTCAGTATTCGCATCCCGTACGAACCGAAGGAGGAAAATCATGATTAA 1602
||||||.|||||||.|||||.||||||||||||||||||.||||||||
RBAM_028620__ 1555 TTCAGTCTTCGCATTCCGTATGAACCGAAGGAGGAAAATGATGATTAA 1602
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