Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_04642 and RBAM_028620

See Amino acid alignment / Visit BSNT_04642 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:27:06
# Commandline: needle
#    -asequence dna-align/BSNT_04642___dcuS.1.9828.seq
#    -bsequence dna-align/RBAM_028620___yufL.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04642___dcuS-RBAM_028620___yufL.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04642___dcuS-RBAM_028620___yufL.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04642___dcuS
# 2: RBAM_028620___yufL
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1648
# Identity:    1223/1648 (74.2%)
# Similarity:  1223/1648 (74.2%)
# Gaps:          92/1648 ( 5.6%)
# Score: 4357.0
# 
#
#=======================================

BSNT_04642___      1 ATGAAAAAAACATTAAAACTGCAAACCAGACTCACCATATTTGTTTGTAT     50
                     ||||||||||||||||||.||||||||.||.|.||.||.||.||.|||||
RBAM_028620__      1 ATGAAAAAAACATTAAAATTGCAAACCCGATTAACGATTTTCGTCTGTAT     50

BSNT_04642___     51 CGTTGTATTAATCGCA--TTGCTCATTACGTTTTTTACAGTCGGTGCCCA     98
                     .||.||..|.||||||  |||  .||.||.|||||.||..||.|.|.|||
RBAM_028620__     51 TGTCGTCCTTATCGCACTTTG--TATCACCTTTTTCACGATCAGCGTCCA     98

BSNT_04642___     99 AACCACCAAAC-----GAATTAGAGATCAGGAAAAGGCCACTGCGCTGCA    143
                     || ||.||.||     |||    |||..|.|||..|.|.||.|||||||.
RBAM_028620__     99 AA-CAGCAGACCGCGTGAA----AGAAGAAGAACGGACGACCGCGCTGCG    143

BSNT_04642___    144 GACTGCTGAAA--TGGTAGCTGAGGCGCCGA-TGACAGCCGC-TGCTTTA    189
                     .||.||  |||  ||||.||.||..|.|||| ||.|  .||| .||.|| 
RBAM_028620__    144 CACCGC--AAAGCTGGTCGCGGAAACACCGAGTGTC--GCGCGGGCATT-    188

BSNT_04642___    190 GAAAGCGGAAAAAAACAAAAGGAACTG-CAGAGC----------TACACA    228
                            |.|||.||.|||||| .||| .|||||          ||||..
RBAM_028620__    189 -------GCAAACAAGAAAAGG-GCTGAAAGAGCTCCGGGATTATACATT    230

BSNT_04642___    229 AAGCGGGTTCAGAAAATTACCGGCACGGAATTTGTTGTCGTCATGGATAT    278
                     |..|  ||.|||.|.|..||.||.||.||||||||.||.||.||||||||
RBAM_028620__    231 AGAC--GTCCAGCATACGACAGGAACCGAATTTGTCGTGGTGATGGATAT    278

BSNT_04642___    279 GAACGGTATCCGCAAAACTCATCCTGACCCGAGCAAAATCGGAAAAAAAT    328
                     ||||.|.||||||...||.||.||.|||.|.|..||||||||.||.||||
RBAM_028620__    279 GAACAGCATCCGCCTCACCCACCCCGACGCAAATAAAATCGGGAAGAAAT    328

BSNT_04642___    329 TCAGAGGCGGTGATG---AGTC--CGAGGTATTAAAAGGGCATGTCCATA    373
                     |||..|||||.||||   ||.|  |||     |..|.||||||.||.|.|
RBAM_028620__    329 TCACCGGCGGAGATGAACAGCCGGCGA-----TGCACGGGCATATCAAAA    373

BSNT_04642___    374 TCAGCACAGCCTCTGGCACGCTCGGGAAATCGCA-GAGAGCGTTCGTCCC    422
                     ..||||||.|..|.||.||.|||||.||||| || ||||||.|||||.||
RBAM_028620__    374 CGAGCACATCAGCGGGAACTCTCGGAAAATC-CATGAGAGCCTTCGTACC    422

BSNT_04642___    423 TGTCTACGCGGAGA--ATGGAAAACAGGTCGGTGCAGTCGCGGTCGGCAT    470
                     ..||||  .|||.|  ||..||||||.||.||.|..||..|||||||.||
RBAM_028620__    423 GATCTA--TGGAAAAGATAAAAAACAAGTGGGCGTCGTTTCGGTCGGAAT    470

BSNT_04642___    471 CACCGTAAATGAAATTGATGAAGTGATCAGCCATAGCTTACGGCCGCTTT    520
                     ..|..|.||..||||..|.||.||..|||||||.||.||..|.|||||||
RBAM_028620__    471 TTCGCTTAACAAAATACAGGATGTCGTCAGCCACAGTTTGAGACCGCTTT    520

BSNT_04642___    521 ACTTTATTATTTGCGTCAGCATCTTCGTCGGTGTGATCGGAGCCGTTATC    570
                     |.||.||.||.|||||.||.||.||.|||||.||.|||||||||||.||.
RBAM_028620__    521 ATTTCATCATCTGCGTAAGTATTTTTGTCGGCGTCATCGGAGCCGTCATT    570

BSNT_04642___    571 GTCGCCCGTACAGTGAAAAATATCATGTACGGACTTGAACCTTATGAAAT    620
                     ||||||||.||.||.|||||.||.||||||||.|||||.||||||||.||
RBAM_028620__    571 GTCGCCCGCACCGTCAAAAACATTATGTACGGTCTTGAGCCTTATGAGAT    620

BSNT_04642___    621 TGCGACTCTGCTTGAAGAACGGAGCGCGATGCTGGAATCGACGAAGGAAG    670
                     .||.||.||.||.|||||.||||||||.|||||.|||||.||||||||||
RBAM_028620__    621 CGCCACCCTCCTCGAAGAGCGGAGCGCCATGCTCGAATCAACGAAGGAAG    670

BSNT_04642___    671 GAATACTCGCTGTCGATGAACATGGCAAAATTAAACTTGCCAACGCGGAA    720
                     |.||.||.||.||.||.|..|..||.|||||.||.||.|||||.||||||
RBAM_028620__    671 GCATTCTGGCGGTTGACGCGCGGGGAAAAATCAAGCTCGCCAATGCGGAA    720

BSNT_04642___    721 GCAAAACACCTATTCGTCAAAATGGGCATCAACACAAATCCCATTGATCA    770
                     ||.||||..||.||..|.||||||||.||....||.|||||..|.|||||
RBAM_028620__    721 GCGAAACGGCTTTTTATTAAAATGGGTATTCCGACTAATCCGGTCGATCA    770

BSNT_04642___    771 GGATGTAGATGACATCTTGCCGAAAAGCCGCTTGAAAAAGGTCATTGAGA    820
                     .|||||..|.||.||..|.|||||||||||..|||||.|.||.|||||.|
RBAM_028620__    771 AGATGTGAACGATATTCTCCCGAAAAGCCGGCTGAAACAAGTGATTGAAA    820

BSNT_04642___    821 CAAAAAAACCTCTTCAAGACAGAGACGTCCGCATTAACGGACTGGAGCTT    870
                     |.||||||||.|||||.|||||.||..|||||||||||||.||.|||||.
RBAM_028620__    821 CGAAAAAACCGCTTCAGGACAGGGATATCCGCATTAACGGGCTTGAGCTG    870

BSNT_04642___    871 GTGTTTAATGAAGTTCCTATCCAGCTGAAAGGACAAACTGTCGGAGCGAT    920
                     ||.||||||||.|||||.||.||.||||||||||||||.|||||||||||
RBAM_028620__    871 GTCTTTAATGAGGTTCCGATTCATCTGAAAGGACAAACCGTCGGAGCGAT    920

BSNT_04642___    921 TGCAACATTCCGCGACAAGACCGAGGTAAAACATTTAGCTGAACAGCTTT    970
                     .||.||.|||.|.|||||.||.|||||.|||||||||||.||||||||.|
RBAM_028620__    921 CGCCACGTTCAGGGACAAAACGGAGGTCAAACATTTAGCAGAACAGCTGT    970

BSNT_04642___    971 CCGGTGTTAAAATGTATGCAAACGCACTGAGAGCGCAGTCTCATGAATTT   1020
                     ||||||||||||||||||||||||||.|.|||||.||||||||||||||.
RBAM_028620__    971 CCGGTGTTAAAATGTATGCAAACGCATTAAGAGCCCAGTCTCATGAATTC   1020

BSNT_04642___   1021 ATGAACAAACTGCATGTGATATTAGGTCTCGTCCAGCTGAAAGAGTATGA   1070
                     |||||.||.||.|||||.||.|||||.||.||||||.|.|||||.||.||
RBAM_028620__   1021 ATGAATAAGCTTCATGTTATTTTAGGGCTTGTCCAGTTAAAAGAATACGA   1070

BSNT_04642___   1071 TGATCTTGGAGATTATATTAAAGATATAGCCATACAGCAAAAATCAGAAA   1120
                     ||||||.||...|||.||||||||.||.|||||.|||||.||..|.||||
RBAM_028620__   1071 TGATCTCGGCACTTACATTAAAGACATTGCCATTCAGCAGAAGACGGAAA   1120

BSNT_04642___   1121 CAAGTGAAATTATAAATGATGTCAAAAGCTCC-GTACTGGCCGGTTTTCT   1169
                     ||||.||.|||||||.|||||||||||| ||| ||.||.||.||.|||||
RBAM_028620__   1121 CAAGCGAGATTATAAGTGATGTCAAAAG-TCCGGTTCTCGCAGGGTTTCT   1169

BSNT_04642___   1170 GCTCGGAAAGCAAAGCTTTATACGTGAGCAGGGCGCAAATCTTGATATTG   1219
                     .||.|||||.|||||||..|||||.||.||||||||..||||.||.|||.
RBAM_028620__   1170 TCTAGGAAAACAAAGCTACATACGCGAACAGGGCGCTGATCTGGACATTC   1219

BSNT_04642___   1220 AATGCAACGG-----TGTCATCCCGAACGCGGCAGACCCTTCTGTCATCC   1264
                     |  || .|||     ||  ||||||||.||||||||.||..|.|||||||
RBAM_028620__   1220 A--GC-TCGGCAGCCTG--ATCCCGAATGCGGCAGATCCGGCCGTCATCC   1264

BSNT_04642___   1265 ATGAACTTATTACAATCATCGGAAATCTCATCAACAATG-GCTTAGACGC   1313
                     ||||.||||||||.||.||||||||.||..|.|||||.| || |.|||||
RBAM_028620__   1265 ATGAGCTTATTACGATTATCGGAAACCTGTTAAACAACGCGC-TCGACGC   1313

BSNT_04642___   1314 CGTTGCGGATATGCCGAAAAAACAAATCACCATG-TCCATGCGCTTCCAT   1362
                     .||.|||.|.||||||||||||.|.||.| |.|| ||.|||||.||.||.
RBAM_028620__   1314 GGTGGCGCAGATGCCGAAAAAAAACATTA-CGTGCTCGATGCGGTTTCAG   1362

BSNT_04642___   1363 AA----CAGCATACTTGATATTGAAATTACCGATACTGGAGCAGGCATGT   1408
                     .|    |||    ||||||||.||.|||||.||.||.|||||.||.||||
RBAM_028620__   1363 GATCGCCAG----CTTGATATAGAGATTACGGACACGGGAGCCGGAATGT   1408

BSNT_04642___   1409 CTGAAGAAGACCAAGCCAAAGTA--TTTGAACAAGGCTATTCAAC-AAAG   1455
                     |||..|.||||||||||  .|||  |||||||||||.|||||.|| ||||
RBAM_028620__   1409 CTGCGGCAGACCAAGCC--CGTATTTTTGAACAAGGTTATTCCACGAAAG   1456

BSNT_04642___   1456 GGCAAAAACCGGGGATTCGGCCTTTATTTCACACAGCAAAGCATC-GAAA   1504
                     || |.|||||||||.||||||||.||||||||.|||| |.|||.| ||||
RBAM_028620__   1457 GG-ACAAACCGGGGGTTCGGCCTCTATTTCACCCAGC-AGGCAACAGAAA   1504

BSNT_04642___   1505 ATTTAAAAGGCCAAATGATCCTCACAAGCGAAAAGAATGAAGGAACGACA   1554
                     |||||||||||||.|||||..|.|||||.||||||||||||||||||||.
RBAM_028620__   1505 ATTTAAAAGGCCATATGATTGTGACAAGTGAAAAGAATGAAGGAACGACT   1554

BSNT_04642___   1555 TTCAGTATTCGCATCCCGTACGAACCGAAGGAGGAAAATCATGATTAA   1602
                     ||||||.|||||||.|||||.||||||||||||||||||.||||||||
RBAM_028620__   1555 TTCAGTCTTCGCATTCCGTATGAACCGAAGGAGGAAAATGATGATTAA   1602


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