Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_04641 and RBAM_028610

See Amino acid alignment / Visit BSNT_04641 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:27:06
# Commandline: needle
#    -asequence dna-align/BSNT_04641.1.9828.seq
#    -bsequence dna-align/RBAM_028610___yufK.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04641-RBAM_028610___yufK.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04641-RBAM_028610___yufK.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04641
# 2: RBAM_028610___yufK
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 570
# Identity:     436/570 (76.5%)
# Similarity:   436/570 (76.5%)
# Gaps:          24/570 ( 4.2%)
# Score: 1661.5
# 
#
#=======================================

BSNT_04641         1 ATGAAAAATACTTATTTGACAGGATATTTTCCGCTGATTGCGATCCTGCT     50
                     ||||||||||||||||.|||.||.|||||||||||..|||||||.|||||
RBAM_028610__      1 ATGAAAAATACTTATTGGACGGGTTATTTTCCGCTCGTTGCGATTCTGCT     50

BSNT_04641        51 TTTTAGTTCGTCCTTATCCATCTCAACTTCACTTTATGCGTTGAAGATGC    100
                     ||||||||||||.||||||||.||.||.||.|||||||...|||||||  
RBAM_028610__     51 TTTTAGTTCGTCATTATCCATTTCTACCTCGCTTTATGTCATGAAGAT--     98

BSNT_04641       101 TGTCTTCA----TTTGGAATGTATGATGGAATGCTCGATTATTTTTCAGA    146
                       .|||||    .|.||.||||||.|.||.|||||.||||||||.||.||
RBAM_028610__     99 --ACTTCAGACGCTCGGCATGTATCAGGGGATGCTGGATTATTTCTCTGA    146

BSNT_04641       147 GAAAGGAATCAGGCTTGCGTTATTTGCTGCCTTTGCACTTTTATATTTTA    196
                     ||||||.|||||.||.|||.|.|||||.||.||.||.|||.|.|||||||
RBAM_028610__    147 GAAAGGGATCAGACTGGCGCTTTTTGCAGCGTTCGCCCTTGTGTATTTTA    196

BSNT_04641       197 TGGTTCTGTCCGCTCTGAAATTAATTGCAAATACCGTGACCGAGCTGTCA    246
                     ||.|..|.||.|||.||||..|.||||||||.||.|||||.||||||||.
RBAM_028610__    197 TGCTCTTTTCGGCTTTGAAGCTGATTGCAAACACAGTGACAGAGCTGTCT    246

BSNT_04641       247 TTGCTGTTTTTTGCTAATGATCCGGAAGGGAACAACCTGAAAAAACTCAG    296
                     .|..|||||||..|.|||||.||.||||||.||||.|||||||||.||||
RBAM_028610__    247 CTTTTGTTTTTCACAAATGACCCTGAAGGGGACAATCTGAAAAAAATCAG    296

BSNT_04641       297 AATGGGTTCCATGATTTATTTGGGCGGCGGGATTTTATCCTTTGTGCTCT    346
                     |.|.||.||..|.||||||.|.|||||.||.|||.|.|||||||.||||.
RBAM_028610__    297 ATTAGGCTCTTTAATTTATGTAGGCGGAGGAATTCTTTCCTTTGCGCTCG    346

BSNT_04641       347 TGCAAAATGTCATTTGGATTGTGATCTGGTTTGCGGTCGTCACGCTCGCT    396
                     ||||.||||...|||||||||.|...|..|||||.||.||.|||||||.|
RBAM_028610__    347 TGCAGAATGGTTTTTGGATTGCGGCGTTATTTGCTGTTGTTACGCTCGTT    396

BSNT_04641       397 TACTTTG-TGTTTACCGTATACCGGATTTATTCGACGCTTTCTCTCATGT    445
                     || |||| |.||.|..||.|||.|.||.||||||||.||.|||.||.|.|
RBAM_028610__    397 TA-TTTGATTTTCATGGTGTACAGAATCTATTCGACACTCTCTATCGTTT    445

BSNT_04641       446 C----ATTAGTTGGATTCATTCTATTG---GAACTGCTGTTTTGGTTTAC    488
                     |    ||..|||       ||.|||||   ||..|.||||||||||||||
RBAM_028610__    446 CGCTGATCGGTT-------TTATATTGCTTGAGATTCTGTTTTGGTTTAC    488

BSNT_04641       489 CTTTGTTATCGGTATTCTGTTCATATTTATCAAGCTTTATAATAGCATAA    538
                     .|||||||||||||||.|||.|||.|||||||||||||||||||||||||
RBAM_028610__    489 TTTTGTTATCGGTATTTTGTACATCTTTATCAAGCTTTATAATAGCATAA    538

BSNT_04641       539 TGGCTAGCTTACCTGTGTAA    558
                     ||||||||||||||||||||
RBAM_028610__    539 TGGCTAGCTTACCTGTGTAA    558


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