Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04638 and RBAM_028580
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:27:05
# Commandline: needle
# -asequence dna-align/BSNT_04638.1.9828.seq
# -bsequence dna-align/RBAM_028580___yuxJ.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04638-RBAM_028580___yuxJ.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04638-RBAM_028580___yuxJ.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04638
# 2: RBAM_028580___yuxJ
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1158
# Identity: 817/1158 (70.6%)
# Similarity: 817/1158 (70.6%)
# Gaps: 117/1158 (10.1%)
# Score: 3047.5
#
#
#=======================================
BSNT_04638 0 -------------------------------------------------- 0
RBAM_028580__ 1 ATGATTGTTCCGTTTCTTTCGTTATATATCGAAACGATCAGCCCCCATTC 50
BSNT_04638 1 -------------------------------GTGTTCGGCATTACATTTC 19
|||||||||.|.||.|||.
RBAM_028580__ 51 GGGCGGGTATGTGCAGAGATGGAGCGGGTATGTGTTCGGCGTCACGTTTT 100
BSNT_04638 20 TCATGGCGTTTTTGGTATCCCCGTTTTGGGGACGGTTCGGAGACAAACGC 69
|.|||||||||.||.|.||||||||||||||..|.|||||.||.||.|||
RBAM_028580__ 101 TAATGGCGTTTGTGATTTCCCCGTTTTGGGGCAGATTCGGCGATAAGCGC 150
BSNT_04638 70 GGATACAAGAAAATCCTTATGGCAACCGGAACGGGCATTGCCCTCAGCAT 119
||.|||||.|||||.||..||...||.|||||.|||||||||.|||||||
RBAM_028580__ 151 GGCTACAAAAAAATTCTCTTGATTACAGGAACCGGCATTGCCGTCAGCAT 200
BSNT_04638 120 TTTCTTCATGGGCTTTGTTACATCGGTGTACCAATTGTTTTTTCTGCGTA 169
|||.||.|||||.|||||.|||||.||.||.||..|||||.|.|||||..
RBAM_028580__ 201 TTTATTGATGGGGTTTGTGACATCCGTTTATCAGCTGTTTGTCCTGCGGC 250
BSNT_04638 170 TGGCAATGGGTCTTGTAACCGGATTCATCCCGACATCTCTTGCGATGATT 219
||...||||||||.|||||.||.||..|.||||||||.|||||.||||||
RBAM_028580__ 251 TGCTTATGGGTCTAGTAACAGGCTTTGTTCCGACATCGCTTGCCATGATT 300
BSNT_04638 220 TCGGCACAGACTCCG-AAGAG-CTCAGCCGGCAAAACGCTTGGCACGCTG 267
|||||.|||||.||| ||||| || |||||.||.|||||.|||||||||
RBAM_028580__ 301 TCGGCGCAGACGCCGAAAGAGACT--GCCGGGAAGACGCTCGGCACGCTG 348
BSNT_04638 268 CAAATGGGGCAAGTGTCCGGAAGCTTGTTCGGCCCGCTTTTGGGAGGCAT 317
||.|||||.||.|||||.||.|..||.|||||.|||.|..||||.||..|
RBAM_028580__ 349 CAGATGGGTCAGGTGTCAGGCACTTTATTCGGACCGATGCTGGGCGGGCT 398
BSNT_04638 318 GCTTGCTGATCGTTTCGGCTTTACGTATACCTTTTTTATCACATCCTTTG 367
|||.|||||..|.|||||.||||||||.||.||||||||.||.||.||||
RBAM_028580__ 399 GCTCGCTGACAGCTTCGGGTTTACGTACACATTTTTTATTACGTCTTTTG 448
BSNT_04638 368 TAATTTTCTCGTCTGTTCTTCTCGTGTTATTTGGTGTCAAAGAAAAGCCT 417
|.||||||.|.||.||.||||||||.||||||...|||||.||..||||.
RBAM_028580__ 449 TCATTTTCGCATCCGTGCTTCTCGTTTTATTTCAGGTCAATGAGCAGCCG 498
BSNT_04638 418 CTTGCAGAGAAAACAGCCAAACGTACGTCATACTCGAGAAAAGAAGTGCT 467
||.|..||||||..|..|||.||.|...|.||.||.||||||.|.|||||
RBAM_028580__ 499 CTCGGCGAGAAACAAAACAAGCGGAAAACCTATTCCAGAAAACAGGTGCT 548
BSNT_04638 468 CTCCTATATTTTTCACCATCCGGCGCTGTGGGTCATGATGCTGTTAACCA 517
|||.||||||||||||||.||.|||||.||||..||||||.||.|.||.|
RBAM_028580__ 549 CTCTTATATTTTTCACCAGCCCGCGCTTTGGGCGATGATGGTGCTTACTA 598
BSNT_04638 518 TGCTGATTCAAACAGGCAATTTCAGTATCCAGCCCCTGCTCGCTTTATAT 567
||.|..|.||.||.|||||||||||.||||||||.|||||||||||||||
RBAM_028580__ 599 TGATCGTGCAGACCGGCAATTTCAGCATCCAGCCGCTGCTCGCTTTATAT 648
BSNT_04638 568 GTAAATGAGCTGCACGGACCTGTCAATCTTGCCTTTTTCTCCGGCATGGC 617
||.||||||||||||||||||||.|||.|.||||||||||||||.|||||
RBAM_028580__ 649 GTCAATGAGCTGCACGGACCTGTTAATTTAGCCTTTTTCTCCGGAATGGC 698
BSNT_04638 618 ATTTTCAGCAACGGGGCTCGGAAGTTTGCTGCTGGCTAGAAAATGGGGTG 667
.||||||||.||.||.||||||||.||.|||||.||..|.||||||||.|
RBAM_028580__ 699 GTTTTCAGCGACCGGACTCGGAAGCTTACTGCTTGCCCGGAAATGGGGGG 748
BSNT_04638 668 ATCTGGGCGACCGCTACGGCCACCGCCGCATTTTAATCGGACTTTTGCTC 717
|..|.||||||||||.|||||||.||||.||.|||||||..||||||.|.
RBAM_028580__ 749 ACTTCGGCGACCGCTTCGGCCACAGCCGGATCTTAATCGTGCTTTTGATT 798
BSNT_04638 718 GCCGCCTCTTTCTTTTTTATTCCGCAGGCGCTCGCGTCCTCACTCAGCGT 767
|||.|..|..|.|||||.|||||||||||||||||.|||||.|||..|.|
RBAM_028580__ 799 GCCTCAGCGGTGTTTTTCATTCCGCAGGCGCTCGCCTCCTCCCTCTCCAT 848
BSNT_04638 768 GCTCCTTGTTTTCAGATTTTTATTCGGAATGGCGATGGGCGGTTTGCTGC 817
.||..|.||.|||||||||.|.|||||.||||..||||||||...|||.|
RBAM_028580__ 849 TCTGTTAGTCTTCAGATTTCTGTTCGGCATGGTCATGGGCGGCACGCTCC 898
BSNT_04638 818 CATGCATTACGGCAGCGATCCGCGTTCA-GGCTCCCGGCAGCATTCAGGG 866
|.|||||||||||.||.||||||| ||| |||.||.||||||||.|||||
RBAM_028580__ 899 CCTGCATTACGGCCGCAATCCGCG-TCAGGGCGCCGGGCAGCATCCAGGG 947
BSNT_04638 867 TGAAGTTCTCGGCTACAATGTCAGCTTTCGCTTTTTAGGAAACGTGCTCG 916
.||.||.||||||||.||.|||||||||||.|||.|.|||||.|||||||
RBAM_028580__ 948 AGAGGTGCTCGGCTATAACGTCAGCTTTCGTTTTCTCGGAAATGTGCTCG 997
BSNT_04638 917 GGCCTCTGCTCGGGGGAATCATATCGAGCCATTTTACCATTTCGGCCACC 966
|.|||||||||||.||.....|.||.|||..||||.||||||||||..|.
RBAM_028580__ 998 GCCCTCTGCTCGGAGGTGCGGTCTCAAGCGGTTTTTCCATTTCGGCTGCT 1047
BSNT_04638 967 TTTTACGTCACGGCGTTTCTCTTTTTCGCCGGCGCCTGCATGCTT---TG 1013
||.||||||||.||.|||||||||||....|||||..| |||| ||
RBAM_028580__ 1048 TTCTACGTCACCGCCTTTCTCTTTTTAATAGGCGCGGG---GCTTTTATG 1094
BSNT_04638 1014 GAT-------CA--TGCAGAAACTTCGGAAAGATTCTTATGC--CAAA-G 1051
||| || ||||.|| |||.|.| || |||| |
RBAM_028580__ 1095 GATGGCGGGACATCTGCAAAA-----GGATACA-------GCGTCAAATG 1132
BSNT_04638 1052 CAAGCTGA 1059
|..|||||
RBAM_028580__ 1133 CGGGCTGA 1140
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