Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04634 and RBAM_028550
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:27:05
# Commandline: needle
# -asequence dna-align/BSNT_04634___kinB.1.9828.seq
# -bsequence dna-align/RBAM_028550___kinB.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04634___kinB-RBAM_028550___kinB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04634___kinB-RBAM_028550___kinB.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04634___kinB
# 2: RBAM_028550___kinB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1360
# Identity: 889/1360 (65.4%)
# Similarity: 889/1360 (65.4%)
# Gaps: 149/1360 (11.0%)
# Score: 2579.0
#
#
#=======================================
BSNT_04634___ 1 ATGGAAATTCTAAAAGACTATCTTCTGCACATCTGCTTTATTTTGTTTCC 50
|||||.|||.||||.||.||.||.||.|||.|||..||||||||.||.||
RBAM_028550__ 1 ATGGAGATTGTAAAGGATTACCTGCTTCACTTCTCTTTTATTTTATTCCC 50
BSNT_04634___ 51 TATTCTTCTTTACCAAGTGTTTTGGCTTGGAAAACCTGCGATT--CTTGT 98
||||.|||||||.|||||.||.|||||..|.||.|| ||||| |||||
RBAM_028550__ 51 TATTTTTCTTTATCAAGTCTTCTGGCTCAGCAAGCC--CGATTTGCTTGT 98
BSNT_04634___ 99 GCCAAAAATAAACAGCGGTTTGGTCACGCTCTTCGCCTGCGGCG----CC 144
|||.|.|...|||.||....|||||.|..|.|| |||.||| |.
RBAM_028550__ 99 GCCGAGAGCGAACCGCCTGCTGGTCGCCGTATT----TGCAGCGTCATCT 144
BSNT_04634___ 145 TCCGTTTTATGCATTA----TTTTCCCGATTCATGAAATGGACTACATAC 190
|||.|.||||| || ||||||| ||.||.||..|..|.|.|.|.|
RBAM_028550__ 145 TCCTTATTATG---TACGGCTTTTCCC-ATCCAGGAGCTTCATTCCGTCC 190
BSNT_04634___ 191 AATACGGCCTTCAGATGATTCCCGTTATCATTTG-----TTTATTTTACA 235
..|||||..|.|||.||||||||.|||||.|.|| ||||||
RBAM_028550__ 191 GTTACGGTTTGCAGCTGATTCCCATTATCGTCTGCCTGCTTTATT----- 235
BSNT_04634___ 236 TTAGTACCGCTTCCGGACTT---ACAGTCGCCGCATCTGTCCTATGTTTT 282
...|||||||..|.|||||| .|||..||.||||| |.|.|.||||
RBAM_028550__ 236 CCGGTACCGCCGCAGGACTTGCCGCAGGGGCGGCATC---CGTTTTTTTT 282
BSNT_04634___ 283 GAACTGCTTT--TTTACGAACCTTCCGCAATGTTTGTTTTCACTTTGCTG 330
.|.||..|.| ||| |||||||||||..|.|||.|.||..|.||..|.
RBAM_028550__ 283 CAGCTCATATGGTTT--GAACCTTCCGCTCTTTTTTTCTTATCCTTAATT 330
BSNT_04634___ 331 CCTTTTCTTATCATTATCCCAATCTTATTTCAG----AAA--AAATGGCC 374
||||||.|.|||||.|||||.||| ||| ||| ||||||||
RBAM_028550__ 331 CCTTTTTTAATCATCATCCCTATC------CAGCTCCAAACGAAATGGCC 374
BSNT_04634___ 375 ATTCATGTCCAAAGC-GAAAAAACTGCT----GCTGTCTTTATTGATCAG 419
||..|.|.|||||| |||.|||||||| || |||| .|.|||.|
RBAM_028550__ 375 -TTTTTTTTCAAAGCGGAAGAAACTGCTTTTCGC--TCTT--CTCATCGG 419
BSNT_04634___ 420 CTGCGTGGAGATTTTCC----TATTTTTCGCCTCAAGCTGGATTCTA-TC 464
||||...||.| || ||||...|||.||...||..| |||| ||
RBAM_028550__ 420 CTGCACTGAAA----CCGCCTTATTAACCGCATCTGTCTTCA-TCTATTC 464
BSNT_04634___ 465 CGCCTTGAATATTTTAAATTTTCAAA---AATCAGGAATTTTCGT---TT 508
|||....||||||||.|||||||||| .||| ||.||| ||
RBAM_028550__ 465 CGCGACCAATATTTTCAATTTTCAAACTCTATC------TTCCGTTTATT 508
BSNT_04634___ 509 ACGAGGCGGCAGTCTCAGGGCTTTTCCGCTC----CAGTGTTCTTCTATT 554
|.|||||||||||.||.|...|||| || |||.|..|||.|..|
RBAM_028550__ 509 ATGAGGCGGCAGTATCTGTTTTTTT----TCAAGTCAGCGCCCTTTTGCT 554
BSNT_04634___ 555 AAGCATCTATATTATCGAAAGCATCGCCGAAAATATCG-CCCTGCGCTCA 603
..||||.|||.|.||.||.|.|||.|..||.||| .|| ||.||||..||
RBAM_028550__ 555 GTGCATTTATTTGATTGAGATCATTGATGAGAAT-GCGTCCATGCGGGCA 603
BSNT_04634___ 604 CAGCTTATCCATTCTGAAAAAATGACGATTGTGAGTGAACTGGCAGCGAG 653
..|||.||.||.||.|||||||||.|..|.||.||.||.||.||.||.||
RBAM_028550__ 604 AGGCTGATTCACTCAGAAAAAATGGCCGTCGTCAGCGAGCTTGCGGCAAG 653
BSNT_04634___ 654 CGTCGCCCATGAGGTCAGGAATCCGCTGACAGTTGTCCGCGGGTTTGTCC 703
||||||||||||.|||.|.||||||||.||.||.|||.|.||.|||||.|
RBAM_028550__ 654 CGTCGCCCATGAAGTCCGCAATCCGCTTACGGTCGTCAGAGGTTTTGTGC 703
BSNT_04634___ 704 AGCTGCTTTTTAATGACGAAACCCTACAAAACAAGT-CGAGTGCGGATTA 752
|||||||.||.|..|.|||....||.||..||||.| |.|.|.|||||..
RBAM_028550__ 704 AGCTGCTGTTCAGCGGCGAGCAGCTTCAGGACAAATCCCACTCCGGATAT 753
BSNT_04634___ 753 CAAAAAGCTTGTACTGTCAGAGCTTGACCGGGCGCAAGGC-ATTATTACA 801
||.||| |||||.|||||.||.||.||||||||.| ||.| ||.|||||.
RBAM_028550__ 754 CAGAAA-CTTGTGCTGTCCGAACTCGACCGGGCTC-AGACGATCATTACG 801
BSNT_04634___ 802 AACTATCTCGATATGGCCAAACAGCA--ATTATACGAAAAAGAGGTTTTT 849
||.||||||||||||||.||.|||.| |.||| ||||||||....|||
RBAM_028550__ 802 AATTATCTCGATATGGCGAAGCAGGATGACTAT--GAAAAAGAAAAGTTT 849
BSNT_04634___ 850 GACCTA----TCAGCCCTTATCAAAGAGACAAGCTCCCTTATGGTGTCGT 895
|| || ||.||.|.|| ||.||.|||.|.|||.|.||||.|||.|
RBAM_028550__ 850 GA--TATTTCTCTGCTCGTA--AAGGAAACAGGTTCCTTAATGGAGTCTT 895
BSNT_04634___ 896 ACGCCAATTACAAGTCAGTAACCGTCGAGGCT-GAAACAGAACCGGAACT 944
|.|||||||..||.||.||.|||||...||.| |||.| ||.||.||
RBAM_028550__ 896 ATGCCAATTTTAAATCGGTGACCGTTACGGTTCGAAGC-GAGCCTGA--- 941
BSNT_04634___ 945 TTTGATA----TACGGAGACGCAACAAAGCTGAAGCAGGCTGTCATCAAC 990
||.||| |.|||.||.|.||.|||.|||||.|||||..||||.||.
RBAM_028550__ 942 -TTTATATGTGTTCGGCGATGTAAAAAAACTGAAACAGGCCTTCATTAAT 990
BSNT_04634___ 991 CTGATGAAAAACAGTATTGAAGCAGT-TCCTC-----ACGG--GAAGGGG 1032
|||||.|||||||||||||||||.|| .|||| |||| ||
RBAM_028550__ 991 CTGATTAAAAACAGTATTGAAGCCGTGCCCTCTGAAAACGGCCGA----- 1035
BSNT_04634___ 1033 ATGATCCACATATCAG-CCAAAA----GAAACGGCCATACGATCATGATT 1077
|||.|..|.||.| |||||| ||| .|.|.|||..|.|||
RBAM_028550__ 1036 ---ATCGAGGTCTCCGTCCAAAAACAGGAA-----GAGATGATTCTCATT 1077
BSNT_04634___ 1078 AACATCACAGACAATGGGGTCGGGATGACAGACCATCAAATGCAAAAACT 1127
.|.||.||.||.||.||..||||.|||.|.||..|..||.||||.|||||
RBAM_028550__ 1078 CAGATTACGGATAACGGAATCGGCATGTCCGATGAAGAACTGCAGAAACT 1127
BSNT_04634___ 1128 CGGCGAACCTTATTATTCCTTAAAAACGAACGGAACGGGACTCGGCCTCA 1177
||||.||||.||||||.|..|.|||||||||||.||.||.|||||.||.|
RBAM_028550__ 1128 CGGCAAACCGTATTATACGCTGAAAACGAACGGCACCGGGCTCGGGCTTA 1177
BSNT_04634___ 1178 CCGTAACCTTTTCCATTATTGAACATCATCACGGGACCATTTCATTTAAC 1227
||||.||.||.||.||||||.|.||||||.|.||..||.|.|..||.|.|
RBAM_028550__ 1178 CCGTGACATTCTCGATTATTCAGCATCATGAAGGCTCCGTCTGTTTCACC 1227
BSNT_04634___ 1228 AGCAGCTTCCAAAAAGGCACTACGGTGACCATTAAGCTTCCCGCTGATCT 1277
|||.||...||....|||||.||||...|..|.|.||||||.||.|.|.|
RBAM_028550__ 1228 AGCGGCGAGCACTCGGGCACAACGGCCTCAGTCAGGCTTCCGGCAGCTGT 1277
BSNT_04634___ 1278 TCCTCACTAG 1287
|||||||
RBAM_028550__ 1278 ---TCACTAG 1284
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