Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04622 and RBAM_028470
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:27:04
# Commandline: needle
# -asequence dna-align/BSNT_04622___yugJ.1.9828.seq
# -bsequence dna-align/RBAM_028470___yugJ.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04622___yugJ-RBAM_028470___yugJ.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04622___yugJ-RBAM_028470___yugJ.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04622___yugJ
# 2: RBAM_028470___yugJ
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1169
# Identity: 939/1169 (80.3%)
# Similarity: 939/1169 (80.3%)
# Gaps: 10/1169 ( 0.9%)
# Score: 3781.5
#
#
#=======================================
BSNT_04622___ 1 ATGCAAAACTTTACATACTGGAATCCGACCAAATTAATTTTCGGGCGCGG 50
|||||||||||||||||.|||||||||||.|||||.||||||||....||
RBAM_028470__ 1 ATGCAAAACTTTACATATTGGAATCCGACAAAATTGATTTTCGGAAAGGG 50
BSNT_04622___ 51 CGAAGTGGAAAGACTTCCGGAGGAACTCAAACCTTACGGAAAAAACGTAT 100
.||.||.||||.||||||.||.|||.|||||||.||||||||||||||..
RBAM_028470__ 51 AGAGGTTGAAAAACTTCCTGAAGAAATCAAACCGTACGGAAAAAACGTGC 100
BSNT_04622___ 101 TGCTTGTGTACGGAGGCGGCAGCATTAAACGCAGCGGCCTGTATGATCAA 150
||||.||.||||||||.|||||||||||.||||||||.||.|||||||||
RBAM_028470__ 101 TGCTCGTATACGGAGGAGGCAGCATTAAGCGCAGCGGTCTTTATGATCAA 150
BSNT_04622___ 151 GTGATTGAACAGCTGAATAAAGCCGGAGCGACCGTGCATGAATTAGCAGG 200
||.|..||||.||||||.|||||.||||..|||||.||||||||.||.||
RBAM_028470__ 151 GTAACCGAACTGCTGAAAAAAGCGGGAGTTACCGTACATGAATTGGCTGG 200
BSNT_04622___ 201 TGTGGAACCGAATCCTCGTGTGTCGACTGTTAATAAAGGTGTTGCCATCT 250
.||.||.||||||||.|||||.||.||.||.||.|||||||||||..|||
RBAM_028470__ 201 CGTAGAGCCGAATCCGCGTGTCTCAACGGTGAACAAAGGTGTTGCGCTCT 250
BSNT_04622___ 251 GTAAAGAACAAAACATTGATTTCTTGCTGGCTGTTGGAGGCGGAAGCGTA 300
||||||||.|.|.|||.||||||||..||||.|||||.||||||||.||.
RBAM_028470__ 251 GTAAAGAAAACAGCATCGATTTCTTATTGGCCGTTGGCGGCGGAAGTGTC 300
BSNT_04622___ 301 ATCGACTGTACAAAAGCGATTGCCGCAGGAGCGAAGTATGATGGTGATGC 350
||.|||||.||.|||||.||.||.||.||.||.||.|||||.||.||.||
RBAM_028470__ 301 ATTGACTGCACGAAAGCCATCGCGGCGGGCGCTAAATATGACGGCGACGC 350
BSNT_04622___ 351 ATGGGATATCGTTACGAAAAAGCATCAGCCAAAAGATGCTTTGCCATTCG 400
.|||||||||||.||||||||.||.|||||.|||||.||..||||.||||
RBAM_028470__ 351 GTGGGATATCGTCACGAAAAAACACCAGCCGAAAGAAGCGCTGCCTTTCG 400
BSNT_04622___ 401 GAACGGTATTGACTCTCGCTGCGACTGGTTCAGAAATGAACTCAGGATCT 450
||||.||..||||.||.||.||.||.||||||||.||||||||.|||||.
RBAM_028470__ 401 GAACAGTGCTGACACTTGCGGCAACCGGTTCAGAGATGAACTCCGGATCA 450
BSNT_04622___ 451 GTTATTACAAACTGGGAAACAAAAGAAAAATACGGCTGGGGCAGCCCGCT 500
||.||.|||||||||||.|||.||||.||||||||.|||||.||||||||
RBAM_028470__ 451 GTCATCACAAACTGGGAGACACAAGAGAAATACGGATGGGGGAGCCCGCT 500
BSNT_04622___ 501 TGTATTCCCTAAATTCTCGATTCTTGATCCGGTGAATACATTCACCGTAC 550
.||.|.||||||||||||.|||||.||||||||.||.|||||.|||||.|
RBAM_028470__ 501 CGTTTACCCTAAATTCTCTATTCTCGATCCGGTAAACACATTTACCGTTC 550
BSNT_04622___ 551 CTAAAAACCACACGATCTACGGGATGGTTGACATGATGAGCCACGTATTC 600
|.|||.|||||||.||.|||||.|||||.||.|||||||||||.||.||.
RBAM_028470__ 551 CGAAAGACCACACCATTTACGGCATGGTCGATATGATGAGCCATGTGTTT 600
BSNT_04622___ 601 GAACAATACTTCCATCATGTATCAAACACGCCGTATCAGGACCGCATGTG 650
||||||||.|||||.||.....||||||||||||||||||||||.|||||
RBAM_028470__ 601 GAACAATATTTCCACCACACGCCAAACACGCCGTATCAGGACCGGATGTG 650
BSNT_04622___ 651 TGAATCACTTCTGCGTACAGTCATTGAAACAGCGCCTAAGCTGATTAATG 700
||||||.||||||||.||.||.||||||||||||||.||||||||.||||
RBAM_028470__ 651 TGAATCGCTTCTGCGCACGGTGATTGAAACAGCGCCGAAGCTGATCAATG 700
BSNT_04622___ 701 ATCTCGAAAATTACGAATTACGTGAGACGATCCTGTACACAGGAACAATC 750
||||.||.||.|||||..|.|||||||||||..|.||.|||||.||.|||
RBAM_028470__ 701 ATCTGGAGAACTACGAGCTTCGTGAGACGATTTTATATACAGGCACGATC 750
BSNT_04622___ 751 GCATTAAACGGCATGCTTTCTATGGGTGCAAGAGGGGATTGGGCTACTCA 800
|||||||||||.|||||.||.|||||.|||||||||||||||||.||.||
RBAM_028470__ 751 GCATTAAACGGAATGCTGTCAATGGGCGCAAGAGGGGATTGGGCCACACA 800
BSNT_04622___ 801 TAATATTGAACATGCAGTATCAGCCGTTTATGATATTCCGCATGCCGGCG 850
.||.||.||.|||||.||||||||.|||||.|||||.|||||.|||||.|
RBAM_028470__ 801 CAACATCGAGCATGCGGTATCAGCGGTTTACGATATACCGCACGCCGGAG 850
BSNT_04622___ 851 GACTGGCGATTCTGTTCCCGAATTGGATGAGACACACATTGT-CT----G 895
|..|.|||||||||||||||||.||||||||||| ||| || |
RBAM_028470__ 851 GTTTAGCGATTCTGTTCCCGAACTGGATGAGACA-----TGTGCTCAAAG 895
BSNT_04622___ 896 AAAACCCTGCCCGCATGAAACAGCTTGCAGTTCGCGTGTTTGATGTTGAA 945
||||.||.||||||.|.|||||||||||.||.||.||.||.|||.||||.
RBAM_028470__ 896 AAAATCCGGCCCGCTTTAAACAGCTTGCCGTCCGTGTCTTCGATATTGAC 945
BSNT_04622___ 946 GAAGCAGGTAAAACAGATGAAGAAATCGCACTTGAAGGTATCGATAAGCT 995
||..||||.|||.||||||||||.||||||||||||||.|||...|.|||
RBAM_028470__ 946 GAGACAGGCAAATCAGATGAAGAGATCGCACTTGAAGGAATCAGCAGGCT 995
BSNT_04622___ 996 GTCCGCATTCTGGACAAGCCTTGGCGCTCCGAACCGTCTTGCTGATTATG 1045
|||.|..||||||||.|||||.||.|||||||||.|.||.||||||||||
RBAM_028470__ 996 GTCTGATTTCTGGACGAGCCTCGGTGCTCCGAACAGACTCGCTGATTATG 1045
BSNT_04622___ 1046 ATATTAATGATGAGCAGCTTGACACAATCGCTGACAAGGCAATGGCTAAC 1095
|||||..|||||||.||||.||.||.||.||.||.||.||.|||||.|||
RBAM_028470__ 1046 ATATTTCTGATGAGAAGCTGGATACGATTGCAGATAAAGCGATGGCAAAC 1095
BSNT_04622___ 1096 GGTACATTCGGCCAATTTAAATCACTCAACAAAGAAGATGTGCTGTCAAT 1145
||..|||||||.||.||.||.|||||..|.||||||||.|||||..|.||
RBAM_028470__ 1096 GGAGCATTCGGACAGTTCAAGTCACTGCAGAAAGAAGACGTGCTTGCGAT 1145
BSNT_04622___ 1146 TTTGAAAGCATCTCTATAA 1164
..||||||||||..|.|||
RBAM_028470__ 1146 ACTGAAAGCATCATTGTAA 1164
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