Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04607 and RBAM_028370
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:27:03
# Commandline: needle
# -asequence dna-align/BSNT_04607___yugT.1.9828.seq
# -bsequence dna-align/RBAM_028370___yugT.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04607___yugT-RBAM_028370___yugT.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04607___yugT-RBAM_028370___yugT.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04607___yugT
# 2: RBAM_028370___yugT
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1701
# Identity: 1249/1701 (73.4%)
# Similarity: 1249/1701 (73.4%)
# Gaps: 78/1701 ( 4.6%)
# Score: 4426.5
#
#
#=======================================
BSNT_04607___ 1 ATGAAAAAGGCTTGGTGGAA---GGAAGCCGTTGTTTACCAAATTTACCC 47
|||||||.||.||||||||| ||..||| ||.||.||||||||.||
RBAM_028370__ 1 ATGAAAACGGATTGGTGGAAAACGGCGGCC---GTCTATCAAATTTATCC 47
BSNT_04607___ 48 CCGCAGTTTTAAAGATTCAAATGGCGACGGAATTGGGGATATTCAAGGAA 97
|||.||.||||..||||||||.||.||||||||.||.||.||..|.||.|
RBAM_028370__ 48 CCGAAGCTTTATGGATTCAAACGGGGACGGAATCGGCGACATGAACGGCA 97
BSNT_04607___ 98 TCAGATCCAAGCTTTCTTACATAAAAGAGCTGGGCGCTGACGTCATATGG 147
|||||.|.||||||..|||||||||||||.||||.||.||.||.||.|||
RBAM_028370__ 98 TCAGAGCAAAGCTTCATTACATAAAAGAGTTGGGGGCGGATGTGATCTGG 147
BSNT_04607___ 148 ATTTGCCCACTGTATGACTCACCGAATGCTGATAATGGCTATGATATCCG 197
.||||.||..|.|.||||||.|||...||.||.||.|||||.|||||.||
RBAM_028370__ 148 CTTTGTCCCGTTTTTGACTCGCCGGGCGCGGACAACGGCTACGATATTCG 197
BSNT_04607___ 198 GGATTATCAAAACATATT--AAGCGAGTTTGGCACCATGGAAGATTTTGA 245
|.||||| |||||.||| ..||||.||.||.||.|||||.||||||||
RBAM_028370__ 198 GAATTAT--AAACAAATTGCCGGCGAATTCGGGACGATGGAGGATTTTGA 245
BSNT_04607___ 246 TGAACTGCTTGGTGACATTCATGATCTGGGGATGAAGCTGATTATGGATC 295
....||.||||..||..|.||||..||.||.||||||||||||||.||.|
RBAM_028370__ 246 CCGGCTCCTTGCGGATGTCCATGCGCTCGGCATGAAGCTGATTATAGACC 295
BSNT_04607___ 296 TCGTTGTGAACCACACAAGCGACGAACATCCATGGTTCATAGAATCCCGT 345
||||..|.|||||.||||||||.||.||.||.|||||.||.|||||.||.
RBAM_028370__ 296 TCGTCATCAACCATACAAGCGATGAGCACCCTTGGTTTATCGAATCACGC 345
BSNT_04607___ 346 TCATCCATACACTCGGAAAAGCGCGACTGGTATATTTGGAAAGACGGCAA 395
|||.|.|.|.|.||.|||||.||.||||||||.||.||||.||||||.||
RBAM_028370__ 346 TCAGCGAAAGATTCCGAAAAACGGGACTGGTACATCTGGAGAGACGGAAA 395
BSNT_04607___ 396 AAACGGAAAAGCGCCCAACAATTGGGAAAGCATTTTCGGCGGACCGGCTT 445
||||||.||||.|||.|||||||||||||||||||||||||||.|.||.|
RBAM_028370__ 396 AAACGGCAAAGAGCCGAACAATTGGGAAAGCATTTTCGGCGGATCAGCGT 445
BSNT_04607___ 446 GGGAGTATGATCAAGAGACAAGCCAGTATTATCTGCACCTTTTTGATAAA 495
||||.||||||||||||||..||||||||||.||||||||.|||||.|||
RBAM_028370__ 446 GGGAATATGATCAAGAGACCGGCCAGTATTACCTGCACCTGTTTGACAAA 495
BSNT_04607___ 496 AAACAGCCTGATTTGAATTGGGAAAATGAACAGGTGAGGAATGCCGTTTA 545
||||||||||||||.|||||||||||.|||..|.|||||.|..|||||||
RBAM_028370__ 496 AAACAGCCTGATTTAAATTGGGAAAACGAAGCGATGAGGCAGTCCGTTTA 545
BSNT_04607___ 546 TGACATGATCAATTGGTGGCTTGATAAAGGAATTGACGGATTTCGGGTGG 595
|||.|||.||...|||||||||||||||||.||.|||||.||.|||||||
RBAM_028370__ 546 TGAGATGGTCCGCTGGTGGCTTGATAAAGGCATAGACGGCTTCCGGGTGG 595
BSNT_04607___ 596 ATGCCATTACGCATATTAAGAAAAAAGAAGGGCTTCCCGACATGCCGAAT 645
||||||||.|.||.||||||||||||||||||||.||.||||||||||||
RBAM_028370__ 596 ATGCCATTTCTCACATTAAGAAAAAAGAAGGGCTCCCTGACATGCCGAAT 645
BSNT_04607___ 646 CCAAAGGGGCTGGACTATGTCCCTTCCTTTCCTTATCATATGAATGCTGA 695
||..|.||.||....||.|||||.||.||.||.|||||||||||||..||
RBAM_028370__ 646 CCGGACGGTCTCCCGTACGTCCCGTCTTTCCCGTATCATATGAATGGGGA 695
BSNT_04607___ 696 CGGCATTATGGATTTGTTAACAGAGCTGAA---GGAAAACACATTTTCCC 742
.|||||.||||||.|.||||.||||||||| |||| ||||||||.|
RBAM_028370__ 696 AGGCATAATGGATCTCTTAAGAGAGCTGAAACGGGAA---ACATTTTCGC 742
BSNT_04607___ 743 GCTATCCGATTATGACAGTTGGTGAAGCAAACGGCGTCGCTGCAAAAGAA 792
||||||||||.|||||.||.||.||.||.|||||.||.||.||....||.
RBAM_028370__ 743 GCTATCCGATCATGACGGTCGGCGAGGCGAACGGAGTGGCGGCTTGGGAG 792
BSNT_04607___ 793 GCAGCTGATTGGGCTGGAGAAAAAAACGGCAT-ATTCAGCATGATTTTTC 841
||.|||||||||||.||.|||.||.|||||.| .|||| .||||||||||
RBAM_028370__ 793 GCGGCTGATTGGGCCGGTGAAGAACACGGCGTCTTTCA-AATGATTTTTC 841
BSNT_04607___ 842 AATTTGAGCATCTCGGCCTGTGGGAT---GTAGA-GATCAATGAAAGTAT 887
|||||||.|||||||||||.|||||| |.||| ||||||.|.| |.|
RBAM_028370__ 842 AATTTGAACATCTCGGCCTCTGGGATACGGAAGATGATCAAAGCA--TCT 889
BSNT_04607___ 888 TGATATCGTTGCATTTAAACGAATTTTAACTGACTGGCAGGACAGTCTGG 937
..||..|| ||..||||.||..|.||..|.|.|||||||.|||||||.|
RBAM_028370__ 890 CCATTCCG--GCGCTTAAGCGCGTCTTGTCCGGCTGGCAGAACAGTCTTG 937
BSNT_04607___ 938 AAGGGATCGGCTGGAATGCTTTGTTTATGGAGAATCACGACCAGCCTCGT 987
||||.|..||||||||.||.||.|||||||||||.|||||.|||||.||.
RBAM_028370__ 938 AAGGAAAGGGCTGGAACGCGTTATTTATGGAGAACCACGATCAGCCCCGC 987
BSNT_04607___ 988 TCAGTTTCTGTGTGGGGAGACG-ACGGAGTGTACCTGAAAGAAAGTGCAA 1036
||.||.||.||.|||||.|||| ||| ||...|||.||||||.||.|
RBAM_028370__ 988 TCCGTCTCGGTATGGGGTGACGAACG----GTTTTTGACAGAAAGCGCCA 1033
BSNT_04607___ 1037 AAGCGCTTTCCGCTGTTTATTTTCTCATGAAAGGCACACCGTTTATTTAT 1086
|.||.||..||||..|.|||.|.||.|||||||||||.|||||||||||.
RBAM_028370__ 1034 AGGCACTCGCCGCGATGTATATGCTGATGAAAGGCACGCCGTTTATTTAC 1083
BSNT_04607___ 1087 CAGGGACAGGAACTCGGGATGACGAACGTGGCTTTTCCATCTATTGAGGA 1136
|||||.|||||.|||||||||||.||.||..|.||||||||.|||||.||
RBAM_028370__ 1084 CAGGGGCAGGAGCTCGGGATGACCAATGTTTCGTTTCCATCCATTGAAGA 1133
BSNT_04607___ 1137 CTATGATGATGTCGCGATGAAACGCCTGTATGAAACAAAAA----CAGCG 1182
.||||||||.|.|||.||||||...||||||||||.|.|.| |.||
RBAM_028370__ 1134 TTATGATGACGCCGCAATGAAATATCTGTATGAAAAAGAGACGTCCCGC- 1182
BSNT_04607___ 1183 AAAGGCACATCACACGAGGATGTGATGAAGATTGTCTGGAAAAAGGGAAG 1232
|||....|.||.||..|.|||||||||||..|||||||.|||||..|
RBAM_028370__ 1183 ---GGCGTTCCGCATGAAAAAGTGATGAAGATCATCTGGAAGAAGGGCCG 1229
BSNT_04607___ 1233 AGACAATTCGCGAACGCCGATGCAATGGAATGCTG-GTCCATACGCCGGA 1281
.||.|||||.||.||.|||||||||||||..|.|| |.|.| |||.|||.
RBAM_028370__ 1230 GGATAATTCACGGACACCGATGCAATGGAGCGATGAGGCGA-ACGGCGGG 1278
BSNT_04607___ 1282 TTTTCTGAGGCCAAACCGTGGATCGGAATCAATGACAATTACAAATGGCT 1331
||||||||.||....||||||.|||||.|.|||...||..|||.||||||
RBAM_028370__ 1279 TTTTCTGATGCTTCTCCGTGGCTCGGAGTGAATCCGAACCACACATGGCT 1328
BSNT_04607___ 1332 GAATGCCGAGGCGCAAAAAAACGATAAAACATCCGTTTACCATTTTTACA 1381
||||||.|...|.||||...|.|||.||||||||||.||||||||.||||
RBAM_028370__ 1329 GAATGCTGCATCACAAATGGAGGATGAAACATCCGTATACCATTTCTACA 1378
BSNT_04607___ 1382 AAAGCTTGATCAAGCTG--CGCC---------AAACATATGATGTTTTTA 1420
.|.| |||| |||| .||||.| ..||.||.|
RBAM_028370__ 1379 GACG---------GCTGCTCGCCCTCAGAAAAGAACACA--GCGTATTGA 1417
BSNT_04607___ 1421 TTAACGGGACATACGA---GCTCATTTTACCGGAAGATCAGCAAATCTTT 1467
|.|.|||.|||||.|| |||..|| |||.|.||.|.|||.||.|.|
RBAM_028370__ 1418 TCAGCGGCACATATGAATTGCTGCTT---CCGAATGACCGGCAGATTTAT 1464
BSNT_04607___ 1468 GCATATCTTCGGAAAAACGAGAGC-CATACTGCACTGATTGCGGCCAATC 1516
||.|||||..|.||||||| ||.| .|.||.||.|||||.....|.||||
RBAM_028370__ 1465 GCCTATCTAAGAAAAAACG-GAACAAAAACCGCCCTGATCATCACAAATC 1513
BSNT_04607___ 1517 TGACAGGAACACCGGCGTTGTTCAGGCACTCTGGAT-TGCCATTGTCATC 1565
||.|..||||.||.||.||.|.||||||..|.||.| |.|..|||.| ||
RBAM_028370__ 1514 TGTCCCGAACCCCCGCTTTATACAGGCATCCCGGTTATCCGCTTGAC-TC 1562
BSNT_04607___ 1566 AGATGCACTCGT-CTTGTCAAATATTGAAACAGAGCCGCACAAGCATATG 1614
.|||.|.||||| |||| ||||..|.||||||||..|||||...|||.||
RBAM_028370__ 1563 CGATTCTCTCGTGCTTG-CAAACGTGGAAACAGAAGCGCACCGCCATGTG 1611
BSNT_04607___ 1615 ACATCAGTACTCTTAAAGCCGTATGAAGCAAGAATATATCTATGGTGCTA 1664
|||||..|.||.||||||||.|||||.||..|..|||||.|||||||.
RBAM_028370__ 1612 ACATCCTTTCTTTTAAAGCCTTATGAGGCCCGCGTATATATATGGTGA-- 1659
BSNT_04607___ 1665 A 1665
RBAM_028370__ 1659 - 1659
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