Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03890 and RBAM_028350
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:11
# Commandline: needle
# -asequence dna-align/BSNT_03890___yrpB.1.9828.seq
# -bsequence dna-align/RBAM_028350___yrpB.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03890___yrpB-RBAM_028350___yrpB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03890___yrpB-RBAM_028350___yrpB.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03890___yrpB
# 2: RBAM_028350___yrpB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1142
# Identity: 669/1142 (58.6%)
# Similarity: 669/1142 (58.6%)
# Gaps: 208/1142 (18.2%)
# Score: 1681.5
#
#
#=======================================
BSNT_03890___ 1 ATGAATGAATTTATGAAGAAG----TTTTCCTTAACAAAACCGATTATTC 46
||||.|||.|..||| || ||.||.||||||||.||..|.||||
RBAM_028350__ 1 ATGAGTGAGTGGATG----AGTGCATTATCATTAACAAAGCCCGTCATTC 46
BSNT_03890___ 47 AAGCTCCAATGGCTGGCGGTATTACAACGCCCCGACTTGCATCTGCAGTT 96
|.||.||.|||||.|||||..|....|||||.||.||.||.||.||.||.
RBAM_028350__ 47 AGGCGCCGATGGCCGGCGGGCTGGTCACGCCGCGTCTGGCTTCGGCGGTA 96
BSNT_03890___ 97 TCGAATCAAGGTGCTCTTGGCAGCTTAGCATCGGGGTATCTTACGCCAGA 146
||.|||.||||.||.||.||.|||.|.||.||.|| .||||.|||.
RBAM_028350__ 97 TCAAATGAAGGGGCGCTCGGAAGCCTCGCTTCAGG-----ATACGTCAGC 141
BSNT_03890___ 147 CC-----TGCTAGAACAACAGATAAAAGAAATGTTTGAGCTGACAGA-CG 190
|| .|||.|||.|||||.|.|..||.|||...||||||||.|| ||
RBAM_028350__ 142 CCGCAAGCGCTTGAAAAACAGCTTATCGAGATGAAAGAGCTGACGGACCG 191
BSNT_03890___ 191 CTCCTTTTCAAATTAATGTGTTTGTTCCGCTAGGTCTAG--AGATGCCAC 238
|||| ||||||.|.|||.|.||.||.||| .||| ..|| ||||| |
RBAM_028350__ 192 CTCC-TTTCAAGTAAATCTTTTCGTCCCG-GAGG-AAAGACAGATG---C 235
BSNT_03890___ 239 CAGAAGATCAGA-----TTAAAAAGTGGAAAGAAAACATACCGTTAGCTA 283
|.||.| |.|| ||.||||.|||||||....|||.|||...||.|
RBAM_028350__ 236 CTGAGG--CGGAACTTGTTGAAAAATGGAAAGCCCGCATTCCGAGGGCAA 283
BSNT_03890___ 284 ATCAAGTAAATCAATTCAC--ATCTGTACAAGAAGAGTGGGATGACTTCT 331
|..|.|..||.|..|||.| ||||| .|||||||.|||.||||.|||.
RBAM_028350__ 284 AAGACGCCAAGCCGTTCTCTGATCTG--AAAGAAGAATGGAATGATTTCG 331
BSNT_03890___ 332 ATCAAAAAATTGA---TCTAAT---TTTAAAATATAAG--GTTAAGGCTT 373
|..|||||...|| |||.|| | ||.| ||.||.||.|
RBAM_028350__ 332 AGGAAAAAGCGGAGCTTCTGATCCGT--------TACGGAGTCAAAGCGT 373
BSNT_03890___ 374 GCTCATTCACTTTTGATCTGCCGCCTGAAG--ACGCAGTAAAGGAGCT-- 419
|.||||||||.||.|..||||||||.|||| |||..|.||| ||||
RBAM_028350__ 374 GTTCATTCACCTTCGGCCTGCCGCCGGAAGAAACGGCGGAAA--AGCTGA 421
BSNT_03890___ 420 --AAAAACCGCTGGATGCTGTTTAATAGGAACCGCTTCAAC-----AGTA 462
||||.|.|.||..|.||.| |.||.||.||..|||| ||
RBAM_028350__ 422 AGAAAAGCGGTTGTTTCCTTT----TCGGCACGGCGACAACGCCGGAG-- 465
BSNT_03890___ 463 GAA--GAAG--CATTGTTAATGGAAGAACGGGGAATGGATATAGTAGTCC 508
||| |||| |.|| ||.||||||||.|||||....||..|.|
RBAM_028350__ 466 GAAGCGAAGGCCTTT-------GAGGAACGGGGGATGGACGCCGTTATTC 508
BSNT_03890___ 509 TTCAAGGAAGTGAAGCCGGTGGACATCGCGGAGCATTCTTACC--TTCCA 556
||||.||||..||||||||.|||||||||||..|.||..|.|| || |
RBAM_028350__ 509 TTCAGGGAATAGAAGCCGGCGGACATCGCGGGTCGTTTCTGCCGGTT--A 556
BSNT_03890___ 557 AAGGTGAATCTGCCGTAGGTTTAATGGCTCTGATTCCACAAGCAGCAGAT 606
||||.|||.|.||..|.||..|.|||||.||||||||.||.||...|||.
RBAM_028350__ 557 AAGGAGAACCGGCTCTCGGCCTTATGGCGCTGATTCCGCAGGCTAAAGAC 606
BSNT_03890___ 607 GCACTGAGCGTACCTGTCATAGCTGCTGGGGGAATGATAGACCATAGAGG 656
||.||||...|.||.||.||.||.||.||.||.||..|.||||...|.||
RBAM_028350__ 607 GCGCTGAATATCCCGGTGATTGCGGCAGGCGGCATTTTTGACCGCCGCGG 656
BSNT_03890___ 657 AGTAAAAGCAGCTTTAACCC------TTGGAGCCCAAGGCGTTCAAATCG 700
.||..|.||.| ||| |.||.||..|.|||||||||.|.|
RBAM_028350__ 657 CGTGCAGGCGG------CCCGATGTTTGGGTGCGGACGGCGTTCAAGTAG 700
BSNT_03890___ 701 GTTCTGCCTTTTTAATTTGTCACGAGAGTAACG-CACATCCAGTACAT-A 748
|..|..|.|||.|..|||||.|.||.||.|.|| |.|| ||.|.|.|| |
RBAM_028350__ 701 GAACACCGTTTCTCCTTTGTGAAGAAAGCAGCGCCTCA-CCGGCATATCA 749
BSNT_03890___ 749 AACAGAAAATACTAGAAGCAAACGAAGCAGATACAAAGCTTACGACATTA 798
||.||..|.|.| .|||.||||.|.|||.||.||...|||.||.||..|.
RBAM_028350__ 750 AAAAGCCATTGC-CGAATCAAAAGGAGCCGACACGCGGCTGACCACCCTG 798
BSNT_03890___ 799 TTTTCAGGTAAAGAGGCCAGAGGAATCGTAAATAAATGGATGGAAGAAAA 848
|||||.||.|||.||||..|.||||||||.|||.|.|..|||
RBAM_028350__ 799 TTTTCGGGAAAACAGGCGCGGGGAATCGTGAATCAGTTCATG-------- 840
BSNT_03890___ 849 AGAACAGTTTGA----GAC-----ACAAACCCTTCCGTACCCTTATCAAA 889
|.|||| |.||| ||| |.||||.||.||.||.||....||.|
RBAM_028350__ 841 AAAACA-TATGAAGCTGACGAGGGAAAAACGCTGCCTTATCCGCTGCATA 889
BSNT_03890___ 890 ATACACTAACGAAGGCAATGAGACAGCAGGCTTCACTTCAAAATAACCAT 939
||||.||.||.|||.|.|||.|...|||.||..| |||
RBAM_028350__ 890 ATACGCTGACAAAGCCGATGCGCGGGCACGCGGC---TCA---------- 926
BSNT_03890___ 940 GATCAG--------------ATGTCTTTATGGGCAGG------------- 962
||||| ||||||||||||||.||
RBAM_028350__ 927 -ATCAGGAGACGCGGAGTATATGTCTTTATGGGCCGGCCAGTCCGCCGCG 975
BSNT_03890___ 963 -----TCAAGGGATACGGTCATTGAC-TGAGGAAA---TTTCGGTTAAGC 1003
|.||||| |.|.|| ||| ||| ||| |||.|| |||
RBAM_028350__ 976 AAACTTGAAGGG---CCGACA--GACGTGA--AAACCGTTTTGG--AAG- 1015
BSNT_03890___ 1004 AGCTTTTAAATCAGCTTTGCCAAGAAGAT-ATAAAAATATAG 1044
||| |.|||.| || ||||
RBAM_028350__ 1016 --------AAT----TGTGCGA-----ATCATAA-------- 1032
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