Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_04601 and RBAM_028340

See Amino acid alignment / Visit BSNT_04601 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:27:03
# Commandline: needle
#    -asequence dna-align/BSNT_04601.1.9828.seq
#    -bsequence dna-align/RBAM_028340.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04601-RBAM_028340.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04601-RBAM_028340.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04601
# 2: RBAM_028340
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 257
# Identity:     185/257 (72.0%)
# Similarity:   185/257 (72.0%)
# Gaps:           7/257 ( 2.7%)
# Score: 624.0
# 
#
#=======================================

BSNT_04601         1 ATGAACATTCTTCAATAT-TCTTATAAAAAAAGAGGGAAAATTGAGTTTG     49
                     |||||.||||||||| || ||.||||||||||||||.|..||||||||||
RBAM_028340        1 ATGAAGATTCTTCAA-ATGTCCTATAAAAAAAGAGGAACTATTGAGTTTG     49

BSNT_04601        50 TATTTGAAGGCTGGCCTCACTCAAAAGTTACAATGGTTCCTATCAAAGGC     99
                     |.|||||||..|..||.||.||.|||||.||.||||..||.||.|||||.
RBAM_028340       50 TCTTTGAAGATTTTCCGCATTCCAAAGTCACCATGGCGCCGATTAAAGGG     99

BSNT_04601       100 TACTATTTTGTCCGCTTTATCAAATGGAGCAGCCAGGATCCAATCGTGAC    149
                     ||.||.|||||||||...||.|||||||||.|.|.|||...|..|||.||
RBAM_028340      100 TATTACTTTGTCCGCGCCATTAAATGGAGCCGACGGGACAGAGCCGTCAC    149

BSNT_04601       150 AAGAAATGACCTTGAAAAAATGGAGTGGGCTGCGAACCAATATTTCGGCA    199
                     ..||.||||..|.||.||..|.||.||||||||.||||||....||||||
RBAM_028340      150 CCGACATGATTTAGAGAAGTTTGAATGGGCTGCAAACCAAGCGCTCGGCA    199

BSNT_04601       200 CAGCCCCCTTCTATCGAAAACGAAAGGCATTTGAAACCCCATCGTCCCGA    249
                     |..|..|.||.||.||||||.||||.||||||...|.|||||||||   |
RBAM_028340      200 CGACGGCTTTTTACCGAAAAAGAAAAGCATTTCGCATCCCATCGTC---A    246

BSNT_04601       250 AAATAG-    255
                     .||| | 
RBAM_028340      247 CAAT-GA    252


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