Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_02034 and RBAM_028230

See Amino acid alignment / Visit BSNT_02034 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:44
# Commandline: needle
#    -asequence dna-align/BSNT_02034___yjcN.1.9828.seq
#    -bsequence dna-align/RBAM_028230___yjcN.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_02034___yjcN-RBAM_028230___yjcN.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02034___yjcN-RBAM_028230___yjcN.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02034___yjcN
# 2: RBAM_028230___yjcN
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 334
# Identity:     242/334 (72.5%)
# Similarity:   242/334 (72.5%)
# Gaps:          17/334 ( 5.1%)
# Score: 879.0
# 
#
#=======================================

BSNT_02034___      1 TTGGAGAAAAAAATGAAAAAGAAAACCTCAT-TTATACTTTCAATTTTGG     49
                                 |||||||||||||.|| || ||.||||..|..|||..|
RBAM_028230__      1 ------------ATGAAAAAGAAAATCT-ATCTTCTACTAACTCTTTCAG     37

BSNT_02034___     50 CAGCACTTATAGTTATATTGATTGCACTACCGGTTCTATCTCCTGTTGTT     99
                     |.|||||...|.||.|.||.|..||.||.||||.|||.|||||..|.||.
RBAM_028230__     38 CGGCACTGGCACTTCTTTTAACAGCGCTCCCGGCTCTTTCTCCCATCGTC     87

BSNT_02034___    100 TTTACAGGTGCTTCTGAAAAAGGAGCAATCAGACACGAAATTTATAAAAG    149
                     ||.||...||||||.|||||||||||.|||||.||.||.||||||||||.
RBAM_028230__     88 TTCACGTCTGCTTCAGAAAAAGGAGCCATCAGGCATGACATTTATAAAAA    137

BSNT_02034___    150 AGGATATCCCTACCAAAGCTACTTTGCAGTACTCC---ATAAAGAAGGTG    196
                     |||||||||.||.||||||||||||||..|.||.|   |..|||||||.|
RBAM_028230__    138 AGGATATCCGTATCAAAGCTACTTTGCGATTCTTCGAAAAGAAGAAGGCG    187

BSNT_02034___    197 ACAATGAATCTGGGAATCTTTATTATGTGAATTGGCTAGATTGGAAAGAT    246
                     .|...||..|.|||||.|||||||||||.||||||.|..|||||||||||
RBAM_028230__    188 GCGGAGAGGCCGGGAACCTTTATTATGTAAATTGGTTCAATTGGAAAGAT    237

BSNT_02034___    247 AAAACTGGACAAACGCCTCACTTATGCTATTCAAAAAAATCATCAGATGG    296
                     .|.||.|||||.|||||.|||.||||.||||||||||||||.||.||.||
RBAM_028230__    238 GATACCGGACAGACGCCGCACGTATGTTATTCAAAAAAATCGTCCGAAGG    287

BSNT_02034___    297 TAAATACAAAGTAGACTGTGGAACCGGGGCGTAA    330
                     ..|.|||||||||..|||.||||||||..|||||
RBAM_028230__    288 CGAGTACAAAGTAAGCTGCGGAACCGGACCGTAA    321


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