Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04571 and RBAM_028190
See
Amino acid alignment /
Visit
BSNT_04571 in genome browser /
Return to
Orthologue table
########################################
# Program: needle
# Rundate: Mon 8 Mar 2010 06:27:01
# Commandline: needle
# -asequence dna-align/BSNT_04571___yuaA.1.9828.seq
# -bsequence dna-align/RBAM_028190___yuaA.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04571___yuaA-RBAM_028190___yuaA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04571___yuaA-RBAM_028190___yuaA.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04571___yuaA
# 2: RBAM_028190___yuaA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 685
# Identity: 512/685 (74.7%)
# Similarity: 512/685 (74.7%)
# Gaps: 32/685 ( 4.7%)
# Score: 1904.0
#
#
#=======================================
BSNT_04571___ 1 TTGGGAAGAATTAAAAATAAGCAATTTGCCGTGATCGGTCTGGGCCGGTT 50
|||||||.|||.||||||||.|||||||||||.|||||.||.|||||.||
RBAM_028190__ 1 TTGGGAAAAATCAAAAATAAACAATTTGCCGTCATCGGACTCGGCCGTTT 50
BSNT_04571___ 51 TGGCGGCAGCATTTGTAAAGAACTTCATAGAATGGGGCATGAGGTCCTTG 100
.|||||.|||||.||||||||.|||..||.|||||||||||||||.||||
RBAM_028190__ 51 CGGCGGAAGCATCTGTAAAGAGCTTTTTAAAATGGGGCATGAGGTGCTTG 100
BSNT_04571___ 101 CGGTTGATATCAACGAAGAAAAGGTCAATGCATATGCTTCTTACGCCACT 150
||||.|||||||.||||||...||||||.|||||..|.|||||.|||||.
RBAM_028190__ 101 CGGTCGATATCAGCGAAGAGCGGGTCAACGCATACTCCTCTTATGCCACG 150
BSNT_04571___ 151 CATGCGGT-------AATTGCCAACGCCACCGAAGAAAACGAATTGCTT- 192
|||||.|| |||| ||||| |||||||.||| ||||
RBAM_028190__ 151 CATGCTGTGCGGGCAAATT--CAACG-----GAAGAAAGCGA---GCTTC 190
BSNT_04571___ 193 --TCATTAGGAATACGCAATTTTGAATATGTGATTGTTGCCATCGGAGCA 240
||..|.||.||..|.||||||||||||||.||.||.||.|||||.||.
RBAM_028190__ 191 AGTCGCTCGGCATCAGAAATTTTGAATATGTCATCGTAGCAATCGGCGCC 240
BSNT_04571___ 241 AATATTCAAGCGAGTACGCTGACCACCCTATTATTAAAGGAGCTTGATAT 290
||.|||||.||.||.||||||||.||.||.|||||.||||||||..|.||
RBAM_028190__ 241 AACATTCAGGCAAGCACGCTGACGACGCTGTTATTGAAGGAGCTGAACAT 290
BSNT_04571___ 291 TCCAAATATTTGGGTGAAGGCTCAAAACTATTATCATCACAAGGTGCTTG 340
.||.||||||||||||||.||.||||||||||||||||||||.|||||||
RBAM_028190__ 291 CCCTAATATTTGGGTGAAAGCGCAAAACTATTATCATCACAAAGTGCTTG 340
BSNT_04571___ 341 AAAAAATCGGCGCTGACCGGATTATTCATCCTGAAAAAGATATGGGAGTT 390
||||.|||||.|||||.||.|||||.|||||.|||||.||||||||.||.
RBAM_028190__ 341 AAAAGATCGGTGCTGATCGTATTATCCATCCCGAAAAGGATATGGGCGTG 390
BSNT_04571___ 391 AAAATCGCACAAAGCCTTTCAGACGAAAATGTTTTGAATTACATTGATCT 440
...||.||.|||||||||||.||.|||||.||.||.|||||.||||||.|
RBAM_028190__ 391 CGGATTGCGCAAAGCCTTTCGGATGAAAACGTCTTAAATTATATTGATTT 440
BSNT_04571___ 441 ATCTGATGAATACAGTATTGTCGAGCTGCTGGCTACGCGCAAGCTTGATT 490
.||.|||||||||||.||.||.|||||....||.|||...|||||..|||
RBAM_028190__ 441 GTCAGATGAATACAGCATCGTGGAGCTTTCAGCCACGAAAAAGCTGCATT 490
BSNT_04571___ 491 CAAAATCGATTATTGACCTGAATGTAAGAGCAAAGTACGGCTGCACGATC 540
.||||||.|||.||||.||....||..|.||.|..|.|||||||||.||.
RBAM_028190__ 491 TAAAATCCATTCTTGAGCTCGGCGTCCGGGCCAGATTCGGCTGCACCATT 540
BSNT_04571___ 541 CTGGCCATTAAACATCATGGAGATAT----CTGT--CTTTCCCCCGCGCC 584
||.|||.|.||||||.|.|||||.|| |||| |.|||.||.|.|.|
RBAM_028190__ 541 CTCGCCTTGAAACATAACGGAGACATTCAGCTGTCCCCTTCTCCGGAGAC 590
BSNT_04571___ 585 TGAAGACATCATTCACGAGCAAGATTGCCTGGTGATCATGGGCCACAAAA 634
|| |||||||.||....||.|||||.|||.|.|||||.||.|||.
RBAM_028190__ 591 TG------TCATTCATGAATGTGACTGCCTTGTGCTGATGGGGCATAAAC 634
BSNT_04571___ 635 AGGATATTAAACGTTTTGAAAACGAAGGGATGTAG 669
..|||||||||.|.|||||||..|||||.|||||.
RBAM_028190__ 635 GTGATATTAAAAGGTTTGAAACTGAAGGAATGTAA 669
#---------------------------------------
#---------------------------------------
Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.