Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_04568 and RBAM_028170

See Amino acid alignment / Visit BSNT_04568 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:27:01
# Commandline: needle
#    -asequence dna-align/BSNT_04568___yuaC.1.9828.seq
#    -bsequence dna-align/RBAM_028170___yuaC.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04568___yuaC-RBAM_028170___yuaC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04568___yuaC-RBAM_028170___yuaC.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04568___yuaC
# 2: RBAM_028170___yuaC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 560
# Identity:     445/560 (79.5%)
# Similarity:   445/560 (79.5%)
# Gaps:          22/560 ( 3.9%)
# Score: 1788.5
# 
#
#=======================================

BSNT_04568___      1 ATGGATGAAAATCCAGAATTTGCAGCTATAGAACAGGCTCGGGATCTTGT     50
                     ||||||||.|||||||||||.||||||||||||||.||..||||||||||
RBAM_028170__      1 ATGGATGAGAATCCAGAATTCGCAGCTATAGAACAAGCCAGGGATCTTGT     50

BSNT_04568___     51 TATTGACTCCATTGCTGAAACGATGGATCTTTACGGAATTACCCGCAGTG    100
                     .|||||.||||||||.||.||||||||||||||||||||.||.||.||||
RBAM_028170__     51 CATTGATTCCATTGCAGAGACGATGGATCTTTACGGAATCACACGGAGTG    100

BSNT_04568___    101 TCGGGATTTTATATGGGACGATGTATATGAGGGATGAGATGACGCTTGAC    150
                     |||||||||||||.||.||.|||||||||||||||||.||||||||||||
RBAM_028170__    101 TCGGGATTTTATACGGAACAATGTATATGAGGGATGAAATGACGCTTGAC    150

BSNT_04568___    151 GAAATGCGTGAGGAGTTGCAAATGAGCAAACCAAGCATGAGCACAGGCGT    200
                     ||||||||.|||||..||||.|||||||||||.||.||||||||||||||
RBAM_028170__    151 GAAATGCGCGAGGAACTGCAGATGAGCAAACCGAGTATGAGCACAGGCGT    200

BSNT_04568___    201 CAAAAAGCTTCAAGACTTAAATGTAGTGAAAAAAACATTTCACCGGGGCA    250
                     |||||||||.||.||.||||||||.||.||||||||.||||||||.||||
RBAM_028170__    201 CAAAAAGCTGCAGGATTTAAATGTGGTCAAAAAAACCTTTCACCGCGGCA    250

BSNT_04568___    251 TCCGTAAGCATACATTTGTGGCTGAGAAGGATTTCTTTAAATTTTTCACA    300
                     ..||.||||||||.|||||.||.||.||.||||||||||..||||||||.
RBAM_028170__    251 CACGGAAGCATACGTTTGTAGCGGAAAAAGATTTCTTTACGTTTTTCACG    300

BSNT_04568___    301 AATTTCTTTCCACCTAAATGGGAGCGGGAGGTTCAAGTGAATGTAGCAGC    350
                     ||||||||.||.||.||||||||.||.||.|||||.||||||.|..|.||
RBAM_028170__    301 AATTTCTTCCCGCCGAAATGGGATCGTGAAGTTCAGGTGAATTTGTCCGC    350

BSNT_04568___    351 GATCGAGGAAGCTCAAGCTGATTTACAAAAGGTTTT-ATG--CAAGGAAG    397
                     .|||||..|.||.||.||.|||||.||....||||| .||  |.||||||
RBAM_028170__    351 CATCGAACAGGCCCAGGCGGATTTGCAGTCCGTTTTGCTGGCCGAGGAAG    400

BSNT_04568___    398 --ATCTCGATGAGGATATCAAAAATGAAGCACTGCAGTTATATGATCAGC    445
                       |.|.||    |.||..||..|| |||||.|.|||||||||||||||||
RBAM_028170__    401 GCAACGCG----GAATTACAGGAA-GAAGCGCGGCAGTTATATGATCAGC    445

BSNT_04568___    446 TGGAAAGCTCTAAAGCTTACTATGACTGGCTGAAACGGCTTGCTGAATCG    495
                     |.||.||.||.||||||||.|||.|.||||||||.|||||.||.||.|||
RBAM_028170__    446 TTGAGAGTTCGAAAGCTTATTATCATTGGCTGAAGCGGCTCGCCGACTCG    495

BSNT_04568___    496 GTGCAGACCGGAGAAATTTTTAAATTTATACCGATCGAAAC-----AAAG    540
                     ||.||||.|||.||.||||||||||||||.|||||.|||||     |||.
RBAM_028170__    496 GTTCAGAGCGGGGAGATTTTTAAATTTATCCCGATAGAAACGGACGAAAA    545

BSNT_04568___    541 TAA-------    543
                     .||       
RBAM_028170__    546 AAACGCCTGA    555


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