Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04563 and RBAM_028140
See
Amino acid alignment /
Visit
BSNT_04563 in genome browser /
Return to
Orthologue table
########################################
# Program: needle
# Rundate: Mon 8 Mar 2010 06:27:01
# Commandline: needle
# -asequence dna-align/BSNT_04563___yuaD.1.9828.seq
# -bsequence dna-align/RBAM_028140___yuaD.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04563___yuaD-RBAM_028140___yuaD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04563___yuaD-RBAM_028140___yuaD.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04563___yuaD
# 2: RBAM_028140___yuaD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 606
# Identity: 423/606 (69.8%)
# Similarity: 423/606 (69.8%)
# Gaps: 51/606 ( 8.4%)
# Score: 1457.0
#
#
#=======================================
BSNT_04563___ 1 ATGTGGAAGCGGATGACTGCAAAAGCGGAAGGCTTATATATCGCAGAAAC 50
||||||||.||.||.||.|||||..||||||||.|||||||.||.||.||
RBAM_028140__ 1 ATGTGGAAACGCATAACAGCAAAGACGGAAGGCGTATATATAGCGGATAC 50
BSNT_04563___ 51 AGAAAGCTTCGTAACAAAGCAAATGGACAAGCTTGATTTTGATTATGGCG 100
.|||...||.||.||.||..|.||||||||||||..|...||.||.||||
RBAM_028140__ 51 CGAACAATTTGTTACCAAAAAGATGGACAAGCTTCGTACGGAATACGGCG 100
BSNT_04563___ 101 GCATCCCCGGCGACTTGCATTTTGGCCTGACCAAAAAAGCGGGAGCCAGA 150
|..|.|||||.|||.|||||||.||.|||||.|||||.||.||.||..|.
RBAM_028140__ 101 GGTTTCCCGGTGACCTGCATTTCGGACTGACAAAAAAGGCCGGCGCGCGT 150
BSNT_04563___ 151 GAACCAATGTTTTCAAGAGGGACTGAAATTTTCAACCGCAGACAAATTTC 200
||.||.||||.|..||||||.||.||||||||.|||||.|||||.|||||
RBAM_028140__ 151 GAGCCGATGTATGAAAGAGGAACAGAAATTTTTAACCGGAGACAGATTTC 200
BSNT_04563___ 201 AATTGTTTCAATAGAGGAATGCAACGAAATCGCTTTAAAAATGGGAGTGC 250
|||.||.||.||.||||||||..|.||.||.||....||.|||||
RBAM_028140__ 201 AATCGTGTCCATGGAGGAATGTGATGACATTGCGGAGAAGATGGG----- 245
BSNT_04563___ 251 CGAGA--------ATTTTGCCGGAATGGCTCGGGGCGAATGTGGCAGTCA 292
|| ||.||.||.|||||||||||.||.||..|.|||.|||
RBAM_028140__ 246 ---GATTTCTCATATATTTCCCGAATGGCTCGGCGCTAACATCGCAATCA 292
BSNT_04563___ 293 GCGGTATGCCAGATCTTACTTCATTAAAAGAAGGAAGCCGGATTATTTTT 342
|||||.|..|.|..||.||..|..|.||||||||||||.|.||.||.|||
RBAM_028140__ 293 GCGGTTTTTCTGCACTGACGCCGCTTAAAGAAGGAAGCAGAATGATATTT 342
BSNT_04563___ 343 CCGAGCGGAGCGGCTCTGCTGTGTGAGGGCGAAAATGATCCGTGTATCCA 392
||.|||||.|||.|||||.||||.|||||.||||||||||||||.||.||
RBAM_028140__ 343 CCAAGCGGTGCGTCTCTGTTGTGCGAGGGAGAAAATGATCCGTGCATTCA 392
BSNT_04563___ 393 GCCGGGAGAAGTCATTCAGTCCTATTATCCGGACAAGCCGAAGCTGACGC 442
||||||||||||||||||.||||.|||||||||..||||.||.|| |||
RBAM_028140__ 393 GCCGGGAGAAGTCATTCAATCCTTTTATCCGGATCAGCCAAAACT--CGC 440
BSNT_04563___ 443 --CGGCTTTCGTCCGCCACGCACTGGGCATTAGAGGGATTGTCTGTATTG 490
||||.||.||..|.|||||..||||||..|||||.|||||||||||||
RBAM_028140__ 441 CGCGGCGTTTGTGAGGCACGCGATGGGCAGAAGAGGAATTGTCTGTATTG 490
BSNT_04563___ 491 TGGAGAGACCTGGTGCTGTTTACACAGGTGATG--------AAATAGAAG 532
|.||..|.||.||||...|.|.|||.||.|||| |
RBAM_028140__ 491 TTGAACGCCCGGGTGACATATGCACGGGCGATGCGGTCACCA-------- 532
BSNT_04563___ 533 TTCATTCCTATCA--------GCGAAAAGTCAAACGAAAAGC-AGAAAGG 573
|.|||||.|||.| |||..||| ||| ||||.| |||| |
RBAM_028140__ 533 TCCATTCTTATGAACCGAAACGCGCCAAG--AAA--AAAATCGAGAA--G 576
BSNT_04563___ 574 GTCTGA 579
||||||
RBAM_028140__ 577 GTCTGA 582
#---------------------------------------
#---------------------------------------
Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.