Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04480 and RBAM_027770
See
Amino acid alignment /
Visit
BSNT_04480 in genome browser /
Return to
Orthologue table
########################################
# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:59
# Commandline: needle
# -asequence dna-align/BSNT_04480___menE.1.9828.seq
# -bsequence dna-align/RBAM_027770___menE.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04480___menE-RBAM_027770___menE.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04480___menE-RBAM_027770___menE.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04480___menE
# 2: RBAM_027770___menE
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1534
# Identity: 1081/1534 (70.5%)
# Similarity: 1081/1534 (70.5%)
# Gaps: 143/1534 ( 9.3%)
# Score: 3675.5
#
#
#=======================================
BSNT_04480___ 1 ATGCTGACAGAACAGCCCAACTGGCTCATGCAGCGGGCACAGCTGACACC 50
|||||||||||||||||.||.||||||||.||..||||.|||||||||||
RBAM_027770__ 1 ATGCTGACAGAACAGCCGAATTGGCTCATTCAAAGGGCTCAGCTGACACC 50
BSNT_04480___ 51 TGAGAGAATCGCTCTCATCTATAGAGACCAAACCG-TGACATTTGCAGAA 99
.|||||||||||||||||.| |.||.|.|||||.| |||||||...||||
RBAM_027770__ 51 AGAGAGAATCGCTCTCATAT-TTGAAAACAAACAGATGACATTCAGAGAA 99
BSNT_04480___ 100 TTATTTGCCGCGTCTAAGCGAATGGCGGCACAGCT-------TGCCGCTC 142
||||.|...||.|||||.|.||||||.||.|.||| |.|.||
RBAM_027770__ 100 TTATATCATGCTTCTAAACAAATGGCCGCGCGGCTGTCCAAATACTGC-- 147
BSNT_04480___ 143 ATTCGGTTCGAAAAGGGGATACTGCG--GCTATTTTGC--TCCA--AAAC 186
|||.|| ||||..|||.||.||| ||.||||||| ||.| |.||
RBAM_027770__ 148 --TCGCTT--AAAAAAGGAGACCGCGCTGCGATTTTGCTTTCTAACAGAC 193
BSNT_04480___ 187 CGTGCAGAAATGGTATACGCCGTTCACGCTTGTTTTTTGCTTGGTGTTAA 236
|| ||||||||.||.|||||||||||.||.||.||..|.||.|...|
RBAM_027770__ 194 CG----GAAATGGTTTATGCCGTTCACGCCTGCTTCTTATTAGGGGCGGA 239
BSNT_04480___ 237 GGCGGTGCTTTTGAATACGAAGCTGTCAACACATGAAAGGCTGTTTCAGC 286
.||.|||||.||||||||||||||.||||.|||.|||.||.|||||||||
RBAM_027770__ 240 AGCTGTGCTGTTGAATACGAAGCTCTCAAAACAGGAACGGTTGTTTCAGC 289
BSNT_04480___ 287 TGGAGGATTC-----CGAATCCGGCTTTTTACTGACAGA------TTCAA 325
|.||.||||| |.||.| |||||.|||..|| ||
RBAM_027770__ 290 TCGAAGATTCACAGGCAAAGC-----TTTTATTGATGGAGGACGGTT--- 331
BSNT_04480___ 326 ACTTTGACAAGAAAGAGTATGAA-----------CACATCGTTCAAACGA 364
||||.|..| ||||.|||||| ||| || ||
RBAM_027770__ 332 --TTTGCCGCG-AAGAATATGAATCTGCGGTCGCCAC--CG--CA----- 369
BSNT_04480___ 365 TTGATGTGGATGAACT----GATGAAAGAAGCAGCACAGGAAATTGAGAT 410
||||||||.||.|| |.|| ||||.||.|.| ||.||| ||.
RBAM_027770__ 370 --GATGTGGACGAGCTGCAGGCTG-AAGAGGCGGGA---GACATT--GAA 411
BSNT_04480___ 411 CC--AAGCTTATATGCAAA---TGGATGCAACGGCAACGCTGATGTATAC 455
|| ||||||||.| || |.||||..|||||.||.||.||||||||
RBAM_027770__ 412 CCTGAAGCTTATGT---AACGCTTGATGATACGGCGACTCTTATGTATAC 458
BSNT_04480___ 456 GTCGGGTACGACAGGAAAGCCCAAGGGAGTTCAGCAAACGTTCGGAAACC 505
|||.||.||.||.||||.|||.|||||.||.|||||.||.|||||.||.|
RBAM_027770__ 459 GTCAGGAACAACGGGAAGGCCGAAGGGGGTGCAGCAGACTTTCGGTAATC 508
BSNT_04480___ 506 ACTATTTCAGTGCGGTGTCGTCCGCGCTTAATTTGGGTATAACAGAACAA 555
|.||||.|||.||.||.|||||.|||||.|||.||||..|.||.||.|..
RBAM_027770__ 509 ATTATTCCAGCGCTGTATCGTCTGCGCTGAATCTGGGGGTCACGGAGCGG 558
BSNT_04480___ 556 GACCGCTGGCTTATCGCATTGCCGCTCTTTCATATCAGCGGCTTGTCCGC 605
||||||||||||||.||..|||||||.||||||||||||||..||||.||
RBAM_027770__ 559 GACCGCTGGCTTATTGCGCTGCCGCTGTTTCATATCAGCGGTCTGTCTGC 608
BSNT_04480___ 606 ATTATTTAAATCTGTGATCTATGGAATGACTGTCGTGCTTCACCAGCGTT 655
..|.|||||.||.||.||.||.||.|||.|||||||||||||.||....|
RBAM_027770__ 609 GCTGTTTAAGTCGGTCATTTACGGCATGCCTGTCGTGCTTCATCAAAAAT 658
BSNT_04480___ 656 TTTCCGTAAGCGATGTGCTGGATTCTATCAACAGGCATGAAGTGACAATG 705
||||.||.|..|||||||||||....||||.|...|||.|.||.||.||.
RBAM_027770__ 659 TTTCTGTCACTGATGTGCTGGACAGCATCAGCTCCCATCAGGTCACGATC 708
BSNT_04480___ 706 ATATCTGCGGTGCAGACTATGCT----GGCCAGTCTTTTGGAAGA---AA 748
||.||.|||||||||||.||||| ||||.| |||..|||| | ||
RBAM_027770__ 709 ATTTCAGCGGTGCAGACCATGCTTTCGGGCCTG-CTTGCGGAA-ACTGAA 756
BSNT_04480___ 749 CAAGCCGCTGCCCTGAATCCATCAGATGCATTCTTCTCGGCGGCGGCCCT 798
||| ||.||||||||..|..|.||||||||.||.|||||.||.||.
RBAM_027770__ 757 CAA-----TGTCCTGAATCACTGCGCTGCATTCTGCTTGGCGGGGGTCCG 801
BSNT_04480___ 799 GCACCGCTGCCATTGCTTGAGGAATGCCGTGAGAAAGGATTCCCTGTCTT 848
||||||||.||..|.|||||.||||||||...||||..|||.||.||.||
RBAM_027770__ 802 GCACCGCTACCGCTCCTTGAAGAATGCCGCAGGAAACAATTTCCGGTATT 851
BSNT_04480___ 849 TCAGTCATATGGAATGACAGAAACATGCTCGCAAATTGTTACCCTGTCGC 898
.||.||.||.||..||||.|||||.|||||.||.|||||.||.||.||.|
RBAM_027770__ 852 CCAATCTTACGGCTTGACTGAAACCTGCTCACAGATTGTCACGCTTTCTC 901
BSNT_04480___ 899 CGGAATTCAGTATGGAAAAGCTCGGATCTGCGGGGAAACCGCTGTTTTCG 948
||||||||||||||||.||||||||.||.||.||.|||||||||||.||.
RBAM_027770__ 902 CGGAATTCAGTATGGACAAGCTCGGCTCGGCCGGTAAACCGCTGTTCTCA 951
BSNT_04480___ 949 TGTGAAATCAAAATAGAGCGGGACGGACAGGTTTGTGAACCGTTTGAACA 998
||.|||||.|.|||.||....||||||.|...|||||..|||||||||||
RBAM_027770__ 952 TGCGAAATTAGAATTGAAAAAGACGGAAACCCTTGTGCGCCGTTTGAACA 1001
BSNT_04480___ 999 CGGTGAAATCATGGTCAAAGGCCCGAATGTCATGAAAAGCTATTTTAACC 1048
|||||||||.|.|||.||||||||||||||.||||||.|.||||...|.|
RBAM_027770__ 1002 CGGTGAAATTACGGTGAAAGGCCCGAATGTAATGAAAGGGTATTACCATC 1051
BSNT_04480___ 1049 GGGA-GAGCGCAAACGAAGCCTCTTTTCAAAATGGCTGGCTGAAAACAGG 1097
|.|| || |||||||.|.|||.|||||||.|||||.|||.|.|||||.||
RBAM_027770__ 1052 GTGACGA-CGCAAACCAGGCCGCTTTTCATAATGGATGGTTTAAAACGGG 1100
BSNT_04480___ 1098 TGATCTTGGTTATTTGGACAATGAAGGCTTTTTATATGTATTAGACAGAC 1147
.||||||||.||||||||..|||||||.||||||||.||..|.|||||.|
RBAM_027770__ 1101 CGATCTTGGCTATTTGGATGATGAAGGGTTTTTATACGTGCTGGACAGGC 1150
BSNT_04480___ 1148 GCTCAGATCTGATCATATCCGGCGGAGAAAACATTTATCCGGCCGAAGTG 1197
|.||.||.||.||.||.||.||||||||||||||.||.|||||.||||||
RBAM_027770__ 1151 GGTCGGACCTCATTATTTCAGGCGGAGAAAACATCTACCCGGCAGAAGTG 1200
BSNT_04480___ 1198 GAGTCAGTGCTGCTTTCACATCCCGCTGTGGCCGAAGCCGGGGTTTCAGG 1247
||..|.|.|||||||.|.|||||.|||||.||.||.|||||.|||||.||
RBAM_027770__ 1201 GAAGCGGCGCTGCTTGCCCATCCGGCTGTAGCAGAGGCCGGTGTTTCGGG 1250
BSNT_04480___ 1248 GGCTGAGGACAAAAAATGGGGGAAAGTGCCTCACGCCTATCTTGTCCTTC 1297
..|.||.||....||.||||||||||||||.||.||.|.|||.||.||
RBAM_027770__ 1251 ATCCGAAGATCCGAAGTGGGGGAAAGTGCCGCATGCTTTTCTCGTGCT-- 1298
BSNT_04480___ 1298 ACAAAC-----CTGTGAG--CGCAGGAGAATTGACTGAC-------TACT 1333
.|| ||||.|| |..||||| ||||| |.|.
RBAM_027770__ 1299 ---GACTTCTTCTGTCAGTTCTGAGGAG------CTGACCGCCTTTTGCC 1339
BSNT_04480___ 1334 GTAAAGAAC-GCTTGGCGAAGTATAAAATTCCGGCGAAATTCTTT----G 1378
|| ||.| |||| ||.||.||||||||.||||| |.|||| |
RBAM_027770__ 1340 GT---GAGCGGCTT-GCAAAATATAAAATACCGGC----TGCTTTTTTCG 1381
BSNT_04480___ 1379 TGCTTGACCGCCTGCCGCGCAATGCGTCTAATAAGCTCTTGCGAAATCAG 1428
.|.|||||.|.||.|||||.||.|||||.|||||.||..||.|..|||.|
RBAM_027770__ 1382 AGGTTGACGGGCTCCCGCGGAACGCGTCCAATAAACTGATGAGGCATCGG 1431
BSNT_04480___ 1429 CTGAAGGATGC-GCGTAAAGGAGAACTGCTATGA 1461
|||||.|| || .||||||||||||.|...||||
RBAM_027770__ 1432 CTGAATGA-GCTTCGTAAAGGAGAATTATCATGA 1464
#---------------------------------------
#---------------------------------------
Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.