Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04479 and RBAM_027760
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:59
# Commandline: needle
# -asequence dna-align/BSNT_04479___menC.1.9828.seq
# -bsequence dna-align/RBAM_027760___menC.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04479___menC-RBAM_027760___menC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04479___menC-RBAM_027760___menC.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04479___menC
# 2: RBAM_027760___menC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1130
# Identity: 861/1130 (76.2%)
# Similarity: 861/1130 (76.2%)
# Gaps: 28/1130 ( 2.5%)
# Score: 3254.5
#
#
#=======================================
BSNT_04479___ 1 ATGATCGAAATAGAAAAAATCACGCTTTACCATTTGAGCATGA-ACTTAA 49
|||||..|.||.|||||||||||.|||||.|||.|.||.|||| .||.||
RBAM_027760__ 1 ATGATTAAGATTGAAAAAATCACCCTTTATCATGTAAGTATGAGGCTGAA 50
BSNT_04479___ 50 AGAAACCGTTTAAAAACAGTATCGAAACGCTTCAAGAGCGTAAATTTCTG 99
| |||||||||||||..|||||.||||||||.||.||.|||||||||.||
RBAM_027760__ 51 A-AAACCGTTTAAAACAAGTATTGAAACGCTGCAGGATCGTAAATTTTTG 99
BSNT_04479___ 100 ATCGTGGAAGCCATTGATACAACAGGTGTCACAGGCTGGGGAGAAGTTTC 149
|||||||||||.||.|||..|||.||....||.||||||||.||.||.||
RBAM_027760__ 100 ATCGTGGAAGCGATCGATGAAACCGGGAGAACCGGCTGGGGGGAGGTATC 149
BSNT_04479___ 150 CGCTTTCTCTTCGCCTTGGTACACCGAGGAAACCATTGGAACATGTTTGC 199
.||.||.|||||.||.|||||.||.||.|||||.|||...|||||...||
RBAM_027760__ 150 GGCGTTTTCTTCTCCGTGGTATACAGAAGAAACGATTCAGACATGCGCGC 199
BSNT_04479___ 200 ATATGCTAAAAGATTTTTTTATCCCAAATGTGGTCGGCCGTGAATTCAAT 249
|||||||.|.|||||||||.|||||||||||.||.|||||.||.||....
RBAM_027760__ 200 ATATGCTGAGAGATTTTTTCATCCCAAATGTCGTAGGCCGCGAGTTTTTC 249
BSNT_04479___ 250 CACCCTTCAGAAGTGCCGGACAGCCTGGCGCGTTATAAAGGAAACCGGAT 299
||.||.|||||||||||.|||||.||.|||||||..|||||||||||.||
RBAM_027760__ 250 CATCCGTCAGAAGTGCCTGACAGTCTCGCGCGTTTCAAAGGAAACCGCAT 299
BSNT_04479___ 300 GGCAAAAGCGGGACTTGAATCGGCTGTATGGGATATCTATGCCAAAAAGA 349
||||||||||||.||.|||||.||.||.||||||.|.||||||||.||.|
RBAM_027760__ 300 GGCAAAAGCGGGGCTGGAATCAGCCGTGTGGGATCTATATGCCAAGAAAA 349
BSNT_04479___ 350 AGGGCGTATCCCTTGCTGAGGCATTGGGCGGAACAAGAGATAAAGTCCCT 399
||||..||||.||.||.||.||.||.||.||.|.||||||||||||.||.
RBAM_027760__ 350 AGGGGATATCTCTCGCAGAAGCCTTAGGGGGCAAAAGAGATAAAGTGCCC 399
BSNT_04479___ 400 GCCGGGGTGGTAGTCGGCCTGGC----GCCTCTTGACGATATGCTGAAGG 445
|||||.||||..||.||.||||| || |||.||.|||||...||
RBAM_027760__ 400 GCCGGCGTGGCGGTGGGTCTGGCTTCGGC----TGATGAGATGCTTCGGG 445
BSNT_04479___ 446 AAATTGAGAGCTATCAAAAAGAAGGTTATCAAAGAATAAAAATTAAAATT 495
||||||||...||...||||||||||||||||.|.||||||||.||||||
RBAM_027760__ 446 AAATTGAGCAATACGTAAAAGAAGGTTATCAACGTATAAAAATAAAAATT 495
BSNT_04479___ 496 CAGCCTGGGCAGGATGTGGAATTGGTCAAGGCCATCCGCAGCCGATTCCC 545
|||||.||.||.||.||.||..||||||..||||||||||||||.||.||
RBAM_027760__ 496 CAGCCCGGCCATGACGTTGATCTGGTCAGAGCCATCCGCAGCCGTTTTCC 545
BSNT_04479___ 546 AAACATCCCGCTCATGGCTGATGCCAATTCATCCTATGAGCTGAAGGATA 595
.|||.|.|||||.|||||.||||||||.||..|.|||||.|||||.||.|
RBAM_027760__ 546 GAACGTACCGCTGATGGCGGATGCCAACTCGGCATATGAACTGAAAGACA 595
BSNT_04479___ 596 TCAGCCGTTTAAAGGAGCTTGATGACTATCATTTAATGATGATTGAGCAG 645
|||||.|..|.||.|||.|.|||||.|..||..|..|||||||.||.|||
RBAM_027760__ 596 TCAGCAGGCTGAAAGAGTTGGATGAATTCCAGCTCTTGATGATAGAACAG 645
BSNT_04479___ 646 CCGCTCCAAGCTGACGATATCGTTGACCACCGCCACCTGCAGAAACATTT 695
|||||.|||||.||.|||||.||.||.||||||||||||||||||||.||
RBAM_027760__ 646 CCGCTTCAAGCAGATGATATTGTCGATCACCGCCACCTGCAGAAACACTT 695
BSNT_04479___ 696 GAAAACGGCCATTTGCCTTGATGAGAGCATTTGTTCAGTTGATGATGCGA 745
||.|||.||..|.|||||||||||.|||||.||.|||..||||||.||.|
RBAM_027760__ 696 GAGAACCGCGGTATGCCTTGATGAAAGCATATGCTCATATGATGACGCAA 745
BSNT_04479___ 746 GACGGGCAATTGAGCTAGGAAGCTGCAAAATTATTAATATAAAACCTTCT 795
|.|||||.||||||||.||.|||||.|||||.|||||.||||||||..|.
RBAM_027760__ 746 GGCGGGCGATTGAGCTTGGGAGCTGTAAAATCATTAACATAAAACCGGCG 795
BSNT_04479___ 796 CGTGTCGGCGGCTTAACAGAAGCCTTAAAAATTCATGATTTATGCAAAGA 845
|||||.||.|||.|.|||||.||.||||||||.|||||.|||||||.|||
RBAM_027760__ 796 CGTGTAGGAGGCCTGACAGAGGCTTTAAAAATACATGACTTATGCAGAGA 845
BSNT_04479___ 846 GCATCATATGCAGGTTTGGTGCGGCGGAATGCTGGAAACAGGCATATCAA 895
||||||.||||.|||||||||||||||||||.|.|||||.|||||.||.|
RBAM_027760__ 846 GCATCACATGCCGGTTTGGTGCGGCGGAATGTTTGAAACCGGCATTTCGA 895
BSNT_04479___ 896 GAGCGCAGAACGTGGCGCTTGCTTCACTGCCTCAATTCACAATACCTGGC 945
|||||||||..||.|||||||||||.|||||.|||||.||.|||||.||.
RBAM_027760__ 896 GAGCGCAGACAGTCGCGCTTGCTTCGCTGCCGCAATTTACGATACCGGGT 945
BSNT_04479___ 946 GATATATCTTCATCCTCACGCTATTGGGATGAAGATATTGTAACCCCTGA 995
|||||.||.|||||....||.||.|||||.||.||||||||.||.||.||
RBAM_027760__ 946 GATATTTCCTCATCAGACCGATACTGGGAGGAGGATATTGTCACTCCCGA 995
BSNT_04479___ 996 TATTCGTATTGATAATGGATTTATTTCTGTGTCAAAACAG-CCTGGTTTA 1044
.||.|||||.||..|.|||||.||.||||| ||...||.| ||.||..|.
RBAM_027760__ 996 CATACGTATCGAAGAGGGATTCATCTCTGT-TCCGGACGGTCCCGGACTG 1044
BSNT_04479___ 1045 GGGGTTGAGGTAAACCAAGATATTATGCGAAAATATGTGACCAAAATGGA 1094
||.|||||.||.||.||.||.||.|||.|||||||.||.|||.|||||||
RBAM_027760__ 1045 GGTGTTGAAGTCAATCAGGAAATAATGAGAAAATACGTCACCCAAATGGA 1094
BSNT_04479___ 1095 TGTTTTCAC-ACAGCATGGTTAA------- 1116
.|||||.|| ||| ||
RBAM_027760__ 1095 CGTTTTTACGACA--------AACAACTGA 1116
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