Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_04457 and RBAM_027630

See Amino acid alignment / Visit BSNT_04457 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:26:57
# Commandline: needle
#    -asequence dna-align/BSNT_04457___ytlD.1.9828.seq
#    -bsequence dna-align/RBAM_027630___ytlD.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04457___ytlD-RBAM_027630___ytlD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04457___ytlD-RBAM_027630___ytlD.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04457___ytlD
# 2: RBAM_027630___ytlD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 830
# Identity:     621/830 (74.8%)
# Similarity:   621/830 (74.8%)
# Gaps:          34/830 ( 4.1%)
# Score: 2274.0
# 
#
#=======================================

BSNT_04457___      1 TTGAGAAACAGCAAAGAAACCATTGATCTGCTTCACGAGCAGTATCAATT     50
                     ||||.||||||||..|..||.|||||.|.||||||..||||||     ||
RBAM_027630__      1 TTGAAAAACAGCAGCGGCACGATTGAACAGCTTCATCAGCAGT-----TT     45

BSNT_04457___     51 CA-AACAGA----AAAAGGAAAAG---TGGAAGGTCCATTCCTTTCAGCT     92
                     .| ||.|||    ||||.||||||   .|||   |||.|.|.|.||||..
RBAM_027630__     46 AAGAAAAGACACCAAAAAGAAAAGCTCCGGA---TCCGTGCGTATCAGGC     92

BSNT_04457___     93 TGCCATATTTATTCTCTTTTTCTCGGGCTGGGAAATCTCCAGCAGGCAGG    142
                     .|||||.|||||..|.|||||..|.||.||||||||.||.||||||..||
RBAM_027630__     93 CGCCATTTTTATCGTATTTTTTGCCGGATGGGAAATATCGAGCAGGGCGG    142

BSNT_04457___    143 GCTGGATCGATCCGCTGATCTTCAGCTCTCCATCAGCTGTGT---GGCGA    189
                     ||||||||||||||.|.|||||||||||.||.||.||.||.|   |||..
RBAM_027630__    143 GCTGGATCGATCCGTTAATCTTCAGCTCACCCTCCGCCGTTTGCAGGCTT    192

BSNT_04457___    190 TTA-TTGCTGGAGAAACTTGGTGACGG-TTCTTTACTGTCACACATCGGC    237
                     ||| ||    ||.||..|||..||||| |.|.||.| |.|.|||||||||
RBAM_027630__    193 TTAGTT----GAAAAGATTGCGGACGGATCCCTTGC-GGCGCACATCGGC    237

BSNT_04457___    238 GTCACTTTATTTGAAACGGTGCTTGGCTTTTTGCTCGGGACGTTTATGGG    287
                     ||.||.|||...|||||.||.||.|||||||||.||||.|||.||.|.||
RBAM_027630__    238 GTAACCTTAGGAGAAACCGTTCTCGGCTTTTTGTTCGGCACGCTTCTCGG    287

BSNT_04457___    288 CACGTGCCTAGCCGCTTTGTTATGGTGGTCTAACCGACTTGCCAGAATTT    337
                     |||.|||||.||||||.|||||||||||||.|||.|.||.|||.|..|||
RBAM_027630__    288 CACATGCCTCGCCGCTCTGTTATGGTGGTCAAACAGGCTAGCCCGGGTTT    337

BSNT_04457___    338 TAGATCCGTATCTTGTGATTTTGAACGCAATGCCGAAAGTGGCCCTGGGC    387
                     ||||.|||||.||.||.|||||.|||||.||||||||.||.||.||.||.
RBAM_027630__    338 TAGACCCGTACCTCGTCATTTTAAACGCGATGCCGAAGGTCGCACTCGGA    387

BSNT_04457___    388 CCGATCCTGATTGTCGCGCTCGGTCCCAGTTTTATCAGCATCATTGCGAT    437
                     |||||.||.||.||.||.|||||.||.|.|||.|..|||||..|.||.||
RBAM_027630__    388 CCGATTCTCATCGTGGCACTCGGACCGAATTTCACAAGCATTGTCGCCAT    437

BSNT_04457___    438 GGGAGCCATCATCAGCGTCATTATCACAACCATCGTTGTCTATACCGCCT    487
                     ||||||..|||||||.|||||||||||.||.|||||.||||.|||.||.|
RBAM_027630__    438 GGGAGCAGTCATCAGTGTCATTATCACGACAATCGTCGTCTTTACGGCTT    487

BSNT_04457___    488 TCCAGGAGGTCGACGAAAACTATACGAAAGTCATGAAAACATTCGGCGCA    537
                     |.|||||.||.||.||||||||||..||.||.||||||||.|||||.||.
RBAM_027630__    488 TTCAGGAAGTGGATGAAAACTATATTAAGGTGATGAAAACCTTCGGAGCG    537

BSNT_04457___    538 AAAAAGTGGGTTATTTTTAAAGAAGTCATACTGCCTGCATCCTCCCCCGC    587
                     ||||...|..|.||.||||||||||||||.|||||.||.|.|.|||||||
RBAM_027630__    538 AAAAGAAGCATCATGTTTAAAGAAGTCATTCTGCCGGCGTGCGCCCCCGC    587

BSNT_04457___    588 GATTATTTCAACACTAAAAGTGAACGTCGGTTTATCATGGGTTGGCGTTA    637
                     |||||||||..|.||.|||||.||||||||||||||.|||||.||.||.|
RBAM_027630__    588 GATTATTTCCGCGCTTAAAGTAAACGTCGGTTTATCCTGGGTCGGTGTGA    637

BSNT_04457___    638 TTGTAGGGGAATTCCTCGTTTC----GAAGGTCGGATTAGGATATATGAT    683
                     |.||.||.||.||.||||||||    .||||||    |.||.||.|||||
RBAM_027630__    638 TCGTCGGCGAGTTTCTCGTTTCCGAAAAAGGTC----TGGGCTACATGAT    683

BSNT_04457___    684 TATTTACGGATTCCAAGTCTTCAATTTTACACTCGTCTTCTTAAGCCTGC    733
                     .||||||||||||||.|||||||||||.||.||.||.|||||||||||.|
RBAM_027630__    684 CATTTACGGATTCCAGGTCTTCAATTTCACTCTTGTGTTCTTAAGCCTTC    733

BSNT_04457___    734 TGATCATCGCCATCTTCGCCACTCTGATGTATCAGGGCGTCGAGCTGCTG    783
                     ||||||||||.||.||.||.||..|||||||||||||.|||||.|||.|.
RBAM_027630__    734 TGATCATCGCGATTTTTGCGACATTGATGTATCAGGGAGTCGAACTGTTA    783

BSNT_04457___    784 GAAAAGAAATGGACGAAGGGGAGGACATAA    813
                     ||||..|||||||||||.||.|..|.||||
RBAM_027630__    784 GAAAGAAAATGGACGAAAGGAAAAATATAA    813


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Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_04457 and RBAM_027630

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
