Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04453 and RBAM_027610
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:57
# Commandline: needle
# -asequence dna-align/BSNT_04453.1.9828.seq
# -bsequence dna-align/RBAM_027610___ytlA.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04453-RBAM_027610___ytlA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04453-RBAM_027610___ytlA.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04453
# 2: RBAM_027610___ytlA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1028
# Identity: 754/1028 (73.3%)
# Similarity: 754/1028 (73.3%)
# Gaps: 46/1028 ( 4.5%)
# Score: 2664.0
#
#
#=======================================
BSNT_04453 1 GTGAACAGATGG-TTAAGGCTGGGCTTCGCCTGTGTCGGCAGTAT----C 45
|||||||.|||| |.||..| |||||.||..|.|||| .||| |
RBAM_027610__ 1 GTGAACAAATGGCTCAAAAC-GGGCTGCGTTTTTGTC----ATATCCGCC 45
BSNT_04453 46 TTTCTGATGTTCGCCCTGGCGGCTTGCAAGCAGGAAGAAACGCTCACCAA 95
|||.|..||.||...||..|||||||||..||||||||||..||.||.||
RBAM_027610__ 46 TTTTTCCTGCTCATTCTTCCGGCTTGCAGACAGGAAGAAAGTCTGACAAA 95
BSNT_04453 96 AGTCAAAGTAGCTGAAGTGACCCATTCAATTTTTTACGCACCTTTATATG 145
.||.||.||.||.|||||.||.||.||.||.||.||..|.|||.|.||||
RBAM_027610__ 96 GGTAAAGGTGGCGGAAGTCACACACTCCATCTTCTATACGCCTCTGTATG 145
BSNT_04453 146 TTGCTGAGTCTAAAGGTTTTTTTAAGGAAGAAGGGCTTGA--TGTCGATG 193
|.|||||..|.||||||||.|||||..||||||||||..| |||| |..
RBAM_027610__ 146 TCGCTGAAGCAAAAGGTTTCTTTAAAAAAGAAGGGCTCCAAGTGTC-ACT 194
BSNT_04453 194 TGAATACGACCTGGGGCGGAGATAAAACGATGACATCGCTTCTTTCCAAC 243
|.|| ||.||.|||||||||||.|||||.||||||||||||.|.||.|||
RBAM_027610__ 195 TCAA-ACAACATGGGGCGGAGACAAAACAATGACATCGCTTTTGTCAAAC 243
BSNT_04453 244 GGCTCCGACATCGCGCTTGTCGGGTCAGAAACATCTATTTATGTCGAAGC 293
||.||.|||||||||||.|||||.||.||||||||.|||||.||.||.||
RBAM_027610__ 244 GGGTCAGACATCGCGCTGGTCGGTTCTGAAACATCCATTTACGTGGAGGC 293
BSNT_04453 294 GCAAGGGGCTAAAGATCCCGTCATTAATTTCGCCCAGCTGACTCAGACAG 343
|||.||.||.||||||||.|||||.||.|||||.||||||||.|||||.|
RBAM_027610__ 294 GCAGGGAGCAAAAGATCCGGTCATCAACTTCGCGCAGCTGACGCAGACGG 343
BSNT_04453 344 ACGGAACGTTTCT--TGTCGCGAGAGAA-GATGTTGAA--CACTTCGACT 388
||||.||.||||| ||||.|| ||| |||| .||| || |||.|.|
RBAM_027610__ 344 ACGGCACATTTCTCGTGTCACG---GAAGGATG-AGAAATCA-TTCAAAT 388
BSNT_04453 389 GGGATCAGC----TGAAAGGAAAAACGTTTCTCGGTCAGCGAAAAGGCGG 434
|| ||| |.|||||||||||.||||||||.||||||||||||||
RBAM_027610__ 389 GG----AGCGATTTAAAAGGAAAAACATTTCTCGGCCAGCGAAAAGGCGG 434
BSNT_04453 435 CATGCCGCAAATGGTCGGCGAGTATGTACTGAACAAACATAAGATTGACC 484
||||||.|||||||.|||.|||||.||.|||||.||..||.|.||.||.|
RBAM_027610__ 435 CATGCCCCAAATGGCCGGTGAGTACGTCCTGAAAAAGAATCACATAGAGC 484
BSNT_04453 485 CGCATAAGGATATAGACCTCATCCAGAACATAGACTTCGCCAATATTGCC 534
||.|.||.||.||..|||||.|.||.|||||.||.||||||||||||.||
RBAM_027610__ 485 CGAAAAAAGACATTAACCTCGTTCAAAACATTGATTTCGCCAATATTTCC 534
BSNT_04453 535 AATGCGTTTGCTTCTGGAACCGGTGAGTATGTACAGCTCTTTGAACCGCA 584
||.||.||.||.||.|||||.|||||.|||||.|||||.|||||||||..
RBAM_027610__ 535 AACGCATTCGCATCCGGAACGGGTGATTATGTGCAGCTGTTTGAACCGAC 584
BSNT_04453 585 GGCTTCTCTCTTTGAGAAAAAAGGCATCGGCCATATCGTGGCTTCATTCG 634
|||.||.|..|||||.|||.|||||||||||||||||||.||.||.||||
RBAM_027610__ 585 GGCATCCCAATTTGAAAAAGAAGGCATCGGCCATATCGTCGCATCCTTCG 634
BSNT_04453 635 GAGAAGAATCAGGAGAGGTTCCTTATACGACTTTTATGGCGAAACAAAGC 684
||||||..||.||..|..|.||.||.||.||.||||||||.|||.||||.
RBAM_027610__ 635 GAGAAGCTTCCGGCCAAATGCCATACACAACCTTTATGGCAAAAGAAAGT 684
BSNT_04453 685 TATTTGAAGAAAAATGAAGACACAGCCGTCAAGTTTACAAAAGCCATTTA 734
||||||||.|..||||||.|.||.||.|..||.||.||....|||||.||
RBAM_027610__ 685 TATTTGAAAACCAATGAAAAGACGGCGGAAAAATTCACCCGCGCCATCTA 734
BSNT_04453 735 TAAGGCGCAGCAGTGGGTTGAAAATCATTCTGCGAAGGACATCACAGATG 784
|...||.|||||.|||||.||||..|||.|.||.||.||||||.||.|..
RBAM_027610__ 735 TCGCGCCCAGCAATGGGTGGAAAGCCATCCGGCCAAAGACATCGCAAAAA 784
BSNT_04453 785 CCATTAAAGATGAATTTGATGATACCGACCCAGACGTCATCGAAACATCC 834
|.|||.|..|.|||||||..||||||||.||.|...|.|||||||||||.
RBAM_027610__ 785 CGATTCAGAAGGAATTTGCCGATACCGATCCGGCTATTATCGAAACATCA 834
BSNT_04453 835 ATTGAACGCTATAAAAAACAGCATTCATATTCACCAGACCC---TCTGCT 881
||.||.||||||||||||||..|.||||..||..||||||| |||||
RBAM_027610__ 835 ATAGAGCGCTATAAAAAACAAAAGTCATTCTCTGCAGACCCAGTTCTGC- 883
BSNT_04453 882 TAACGAAAAA----GAATGGGAGCTTCTCCAAACCATTATGGATAAATCG 927
|||| ||||||||.|..||.|||.|.|||||||||.||.|.
RBAM_027610__ 884 ------AAAAGGATGAATGGGAACAGCTTCAATCTATTATGGATGAAGCC 927
BSNT_04453 928 GGAGAACTGCCGAAGCACATTCCATACAATCAGCTTGTAAATAAAGAAAT 977
|||||.||.|||||.||||||||.||||...|.||.||.||.|.|.||||
RBAM_027610__ 928 GGAGAGCTCCCGAAACACATTCCGTACAGCAAACTCGTCAACACAAAAAT 977
BSNT_04453 978 TGCTGAAAAAGTCACCTCGGAGAAATAG 1005
.||..|||||||||||||.||..|||||
RBAM_027610__ 978 CGCCAAAAAAGTCACCTCAGAACAATAG 1005
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