Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04446 and RBAM_027550
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:56
# Commandline: needle
# -asequence dna-align/BSNT_04446___ytnA.1.9828.seq
# -bsequence dna-align/RBAM_027550___ytnA.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04446___ytnA-RBAM_027550___ytnA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04446___ytnA-RBAM_027550___ytnA.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04446___ytnA
# 2: RBAM_027550___ytnA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1413
# Identity: 1062/1413 (75.2%)
# Similarity: 1062/1413 (75.2%)
# Gaps: 30/1413 ( 2.1%)
# Score: 3902.0
#
#
#=======================================
BSNT_04446___ 1 ATGCAAAAACAAA-AACAAGAGTTGCACCGCGGACTCGAAGAAAGGCATA 49
|||| |||||||| ||.||..|.|.||||||||..|.|||||..||||||
RBAM_027550__ 1 ATGC-AAAACAAAGAAAAAACGCTTCACCGCGGCTTGGAAGAGCGGCATA 49
BSNT_04446___ 50 TTTCTTTAATGTCTTTAGGAGCTGCTATAGGAGTAGGGTTGTTCCTCGGC 99
|.||..|.|||||.||.||.||.||.||||||||.|||.||||.|||||.
RBAM_027550__ 50 TCTCGCTTATGTCGTTGGGCGCCGCGATAGGAGTCGGGCTGTTTCTCGGG 99
BSNT_04446___ 100 TCCGCATCAGCTATTCAATTAGCAGGGCCTGGTATTTTGGTAGCGTATGC 149
||.||.||.||.||..|..|.||.|||||.||.|||||.|..||.||.||
RBAM_027550__ 100 TCGGCTTCTGCCATAAAGCTTGCCGGGCCGGGGATTTTAGCCGCTTACGC 149
BSNT_04446___ 150 C-GCAAGCGGCCTGGTCATGTTTTTTATTATGAGAGCGCTTGGGGAAATG 198
| || |||||.|||.|.|||||||||||||||.|.||..|.|||||||||
RBAM_027550__ 150 CTGC-AGCGGGCTGATTATGTTTTTTATTATGCGGGCATTAGGGGAAATG 198
BSNT_04446___ 199 GCTATTCAAAAACCGGTTGCAGGCTCCTTCAGCAGGTATGCGCGTGATTA 248
||.||||||||.||.||.||.|||||.||||||.|||||||..|.|||||
RBAM_027550__ 199 GCGATTCAAAAGCCTGTAGCCGGCTCATTCAGCCGGTATGCCAGAGATTA 248
BSNT_04446___ 249 TTTGGGACCGCTTGCAGGCTATTTAACAGGGTGGAACTACTGGTTTTTAT 298
..|.||.||||||||.||.|.|||||||||.|||||.||.||||||||||
RBAM_027550__ 249 CCTCGGTCCGCTTGCCGGGTTTTTAACAGGCTGGAATTATTGGTTTTTAT 298
BSNT_04446___ 299 GGGTTGTCACCTGTATGGCCGAAATTACTGCTGTCGGCATCTATATGGGG 348
|||||||.|||||.|||||.|||||.||.||.||||||||.||||||||.
RBAM_027550__ 299 GGGTTGTTACCTGCATGGCGGAAATCACCGCGGTCGGCATTTATATGGGC 348
BSNT_04446___ 349 TTCTGGTTTCCTGACGTGCCAAACTGGATTTGGGCATTATCGGCGCTGGT 398
|.||||||.|||||||||||....|||||.|||||..|.|..||.||.||
RBAM_027550__ 349 TACTGGTTCCCTGACGTGCCGTCATGGATCTGGGCGCTTTGTGCACTCGT 398
BSNT_04446___ 399 CATTATGACGGGTGTTAATTTCCTGGCTGTCAAAGCTTACGGTGAGCTGG 448
|||||||||||.|||.||.||.|||||.||||||||.|||||||||||.|
RBAM_027550__ 399 CATTATGACGGCTGTCAACTTTCTGGCGGTCAAAGCGTACGGTGAGCTTG 448
BSNT_04446___ 449 AATTTTGGTTCGCATTGATTAAAATTGTTGCGATCTTATCCATGATTGCA 498
||||.|||||.||..|.||||||.|..|.|||||..|.||.||||||||.
RBAM_027550__ 449 AATTCTGGTTTGCGCTCATTAAAGTCTTGGCGATTCTGTCAATGATTGCG 498
BSNT_04446___ 499 GTCGGTTTATTGATGAT--TATTGCAGGAGTCGGCAATGGGGGCATTGCC 546
.|||||.|..||||||| |||| .||..||||.||.||.|||.||||.
RBAM_027550__ 499 ATCGGTCTGGTGATGATCGTATT--CGGTCTCGGAAACGGAGGCGTTGCG 546
BSNT_04446___ 547 ACCGGAATCAGTAATTTGTGGAACAACGGAGGATTTTTCCCTCAT-GGAT 595
..|||||||||.|||||.||||.|.||||.||.||||||||..|| ||||
RBAM_027550__ 547 CTCGGAATCAGCAATTTATGGAGCCACGGCGGCTTTTTCCCGAATGGGAT 596
BSNT_04446___ 596 TAAAAGGGGTTCTATTGTCTCTTCAAATGGTCATGTTCGCCTATTTAGGG 645
| ||||||||.||..||||.|||||||||||||||||.||||||.|.|||
RBAM_027550__ 597 T-AAAGGGGTGCTGCTGTCGCTTCAAATGGTCATGTTTGCCTATCTCGGG 645
BSNT_04446___ 646 ATTGAAATGATCGGGGTGACGGCTGGCGAAGTAAAAAACCCGCAAAAATC 695
|||||..|||||||.||.||.||.||.||.||.|||||.||..|||||||
RBAM_027550__ 646 ATTGAGCTGATCGGTGTCACAGCCGGTGAGGTCAAAAATCCTGAAAAATC 695
BSNT_04446___ 696 GTTAGCCAAAGCAATCGATACAGTATTTTGGCGGATTTTGATTTTTTATG 745
..|.||....||.||.|||||.||.||||||||.|||.|.||||||||.|
RBAM_027550__ 696 ACTGGCGCGTGCCATAGATACTGTTTTTTGGCGCATTCTCATTTTTTACG 745
BSNT_04446___ 746 TAGGCGCTTTATTTGTCATTATGTCTATTTATCCGTGGCAGGAAATTGGC 795
|.||.|||||.||||||||||||||.||||||||||||||||||||.||.
RBAM_027550__ 746 TCGGAGCTTTGTTTGTCATTATGTCAATTTATCCGTGGCAGGAAATCGGT 795
BSNT_04446___ 796 TCTCAAGGAAGTCCATTTGTTCTCACATTTCAAAAAGTGGGCATTCCATC 845
||....|||||.||.||||||.|.||||||.|||||.|.||.||.||..|
RBAM_027550__ 796 TCAGGCGGAAGCCCGTTTGTTTTGACATTTGAAAAAATCGGAATACCTGC 845
BSNT_04446___ 846 GGCCGCAGGTATCATTAACTTTGTCGTGTTGACAGCCGCGCTGTCTTCAT 895
.||.||.||.||||||||.||||||||.|||||.||.||.||.|||||.|
RBAM_027550__ 846 TGCAGCCGGAATCATTAATTTTGTCGTATTGACGGCGGCCCTTTCTTCCT 895
BSNT_04446___ 896 GCAACAGCGGTATTTTCAGCACAGGGCGGATGCTGTTTAACTTGGCGGAA 945
||||||||||.||.||||||||.|||||.||||||||.||..||||||||
RBAM_027550__ 896 GCAACAGCGGGATCTTCAGCACGGGGCGCATGCTGTTCAATCTGGCGGAA 945
BSNT_04446___ 946 CAGAAAGAGGCGCCACAAGCATATGGTCAGCTGACGAAAGGCGGCATCCC 995
||.||.||.|||||..|||||||.|||..|.|.||.||||||||..|.||
RBAM_027550__ 946 CAAAATGAAGCGCCTAAAGCATACGGTACGGTCACAAAAGGCGGTGTGCC 995
BSNT_04446___ 996 GGGTAAAGCTGTTCTGGCTTCAGCGGGCGCTTTATTAGTCGGAGTGCTGT 1045
|||.|||||.||..|||.||||||||||||.||||...||||.||..||.
RBAM_027550__ 996 GGGAAAAGCGGTATTGGTTTCAGCGGGCGCGTTATGCATCGGCGTTTTGC 1045
BSNT_04446___ 1046 TAAACTATGTTGTCCCTGCGAAGGTATTTACTTGGGTTACAAGTATTGCG 1095
|.|||||.||.||.||.|||||.||.|||||.|||||.||.||.||||||
RBAM_027550__ 1046 TGAACTACGTGGTGCCGGCGAAAGTGTTTACGTGGGTGACGAGCATTGCG 1095
BSNT_04446___ 1096 ACGTTCGGAGCGATTTGGACGTGGGCAATCATTTTGCTTTCTCAAATAAA 1145
||||||||.|||||||||||.|||.|.||.|||||||||||.|||||.||
RBAM_027550__ 1096 ACGTTCGGGGCGATTTGGACATGGTCGATTATTTTGCTTTCCCAAATGAA 1145
BSNT_04446___ 1146 ATACAGGAAAAGTTTGAAGCCGGAAGAAAAGAAACAATTAAAGTACAAAA 1195
|||..|.|||||.||..||||||||.||..||||.||.|.||.||.||||
RBAM_027550__ 1146 ATATCGTAAAAGCTTACAGCCGGAACAACGGAAAAAACTGAAATATAAAA 1195
BSNT_04446___ 1196 TGCCTTTATTTCCGTTTACGTCTTATGTGTCATTGGCATTTCTAGCATTC 1245
|||||||||.|||.|||.|.||.|||.|.||||||||||||||.||.||.
RBAM_027550__ 1196 TGCCTTTATATCCCTTTTCCTCATATATCTCATTGGCATTTCTCGCTTTT 1245
BSNT_04446___ 1246 GTCGTCATTCTTATGGCTTACAGCCCTGATACAAGAGTAGCCGTGATTAT 1295
|||||..|.||.|||||||..|...|.||.||..|.||.|||||.||.||
RBAM_027550__ 1246 GTCGTTGTGCTGATGGCTTTTAATGCAGAGACCCGGGTGGCCGTCATCAT 1295
BSNT_04446___ 1296 CGGGCCGATATGGTTTCTCATCTTGCTGGCTGTGTACTATGGAAAAGGGT 1345
||||||..|.|||||...|||.||..|.||.|..||.||.||.|||||.|
RBAM_027550__ 1296 CGGGCCTGTCTGGTTCGGCATATTATTAGCCGCCTATTACGGGAAAGGTT 1345
BSNT_04446___ 1346 TTCATAAAAAAAATG---CAGCTGCTGCCAGCGAACG---AAATATCAGC 1389
|.|||||||.|||.| .||.| ||| |..|||| |.|.||..||
RBAM_027550__ 1346 TCCATAAAAGAAAAGACATAGGT-CTG---GAAAACGGACAGACATTCGC 1391
BSNT_04446___ 1390 TGA---------- 1392
.||
RBAM_027550__ 1392 CGAAAAAGCGTAA 1404
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