Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_04440 and RBAM_027490

See Amino acid alignment / Visit BSNT_04440 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:26:55
# Commandline: needle
#    -asequence dna-align/BSNT_04440___ytqA.1.9828.seq
#    -bsequence dna-align/RBAM_027490___ytqA.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04440___ytqA-RBAM_027490___ytqA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04440___ytqA-RBAM_027490___ytqA.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04440___ytqA
# 2: RBAM_027490___ytqA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 973
# Identity:     802/973 (82.4%)
# Similarity:   802/973 (82.4%)
# Gaps:           8/973 ( 0.8%)
# Score: 3297.0
# 
#
#=======================================

BSNT_04440___      1 GTGATGCAGAACAATCCTTTTCCTTATTCAAATACGGAAAAACGCTATCA     50
                     .|||...||||.||.|||||||||||||||||||||||||||||.||.||
RBAM_027490__      1 TTGAACGAGAATAACCCTTTTCCTTATTCAAATACGGAAAAACGGTACCA     50

BSNT_04440___     51 TACATTGAATTATCATCTCAGAGAACATTTCGGCCATAAGGTGTTTAAAG    100
                     ||||||.|||||||||||..|.||.||||||||.|||||.||||||||||
RBAM_027490__     51 TACATTAAATTATCATCTGCGGGAGCATTTCGGGCATAAAGTGTTTAAAG    100

BSNT_04440___    101 TGGCGCTTGACGGCGGTTTTGACTGTCCAAATCGGGATGGCACCGTAGCC    150
                     |.|||||||||||||||||||||||.||.||||||||.|||||.||.||.
RBAM_027490__    101 TCGCGCTTGACGGCGGTTTTGACTGCCCGAATCGGGACGGCACGGTTGCA    150

BSNT_04440___    151 CACGGAGGCTGTACGTTTTGCAGCGCAGCAGGCTCCGGAGATTTTGCTGG    200
                     |||||||||||.||.||.||||||||.||.||||||||.||||||||.||
RBAM_027490__    151 CACGGAGGCTGCACATTCTGCAGCGCGGCGGGCTCCGGCGATTTTGCCGG    200

BSNT_04440___    201 AAACCGGACCGATGATTTAATTACGCAATTCCACGACATCAAAAACCGCA    250
                     .||.|||.|||||||.|||.|.||||||||.|||||.|||||||||||||
RBAM_027490__    201 CAATCGGGCCGATGACTTACTCACGCAATTTCACGATATCAAAAACCGCA    250

BSNT_04440___    251 TGCACGAAAAATGGAAGGACGGCAAGTACATCGCTTATTTTCAGGCTTTC    300
                     ||||||||||.|||||.||||||||.||.|||||.|||||.||.||.|||
RBAM_027490__    251 TGCACGAAAAGTGGAAAGACGGCAAATATATCGCATATTTCCAAGCGTTC    300

BSNT_04440___    301 ACAAACACTCACGCCCCGGTTGAGGTGCTTCGTGAGAAATTCGAATCCGT    350
                     ||.||.||.||.||||||||.||||.|||.||.||.||||||||||||||
RBAM_027490__    301 ACGAATACGCATGCCCCGGTAGAGGAGCTGCGAGAAAAATTCGAATCCGT    350

BSNT_04440___    351 CCTC--GCTTTAGATGATGTGGTCGGCATTTCGATCGCCACACGCCCGGA    398
                     ||||  ||||  ||.|..||.||||||||.||||||||.||.||.|||||
RBAM_027490__    351 CCTCAAGCTT--GACGGCGTTGTCGGCATGTCGATCGCGACCCGTCCGGA    398

BSNT_04440___    399 CTGTCTGCCTGATGATGTCGTTGATTACTTGGCAGAGCTGAATGAACGCA    448
                     |||.||.||.||.||||||||.||.||.|||||.||.||||||||.||.|
RBAM_027490__    399 CTGCCTTCCGGACGATGTCGTGGAATATTTGGCCGAACTGAATGAGCGGA    448

BSNT_04440___    449 CCTATTTGTGGGTGGAGCTTGGGCTTCAAACAGTTCATGAACGGACTGCA    498
                     |||||||||||||.||.||.|||||.||.||.||.|||||.|||||.||.
RBAM_027490__    449 CCTATTTGTGGGTTGAACTCGGGCTGCAGACCGTGCATGAGCGGACCGCC    498

BSNT_04440___    499 CTTCTGATCAACCGCGCACATGATTTTAACTGCTATGTGGAAGGCGTCAA    548
                     |||||||||||||||||.|||||||||.||||||||||.||.||.|||||
RBAM_027490__    499 CTTCTGATCAACCGCGCCCATGATTTTGACTGCTATGTTGAGGGTGTCAA    548

BSNT_04440___    549 TAAATTAAGAAAACACGGCATACGTGTCTGCTCGCATATTATCAATGGGC    598
                     ||||.|.||||||||||||||.||.||.||.||.|||||.||.||.||||
RBAM_027490__    549 TAAACTGAGAAAACACGGCATCCGCGTTTGTTCCCATATCATTAACGGGC    598

BSNT_04440___    599 TGCCTTTGGAAGACCGGGACATGATGATGGAAACGGCAAAGGCCGTCGCA    648
                     |.||..|.|||.||.||||||||||||||||.|||||.||.||||||||.
RBAM_027490__    599 TTCCGCTTGAAAACAGGGACATGATGATGGAGACGGCCAAAGCCGTCGCT    648

BSNT_04440___    649 GATTTGGATGTCCAGGGCATTAAAATCCATCTGCTTCACCTACTGAAAGG    698
                     |||||||||||.||.|||||||||||.||.|||||||||.||.|.|||||
RBAM_027490__    649 GATTTGGATGTGCAAGGCATTAAAATTCACCTGCTTCACTTATTAAAAGG    698

BSNT_04440___    699 CACGCCGATGGTCAAACAATATGAAAAGGGCAAGCTGGAATTTCTTTCTC    748
                     |||.||||||||.||.|||||||||||.||.||||||||.||.|||||||
RBAM_027490__    699 CACACCGATGGTGAAGCAATATGAAAAAGGAAAGCTGGAGTTCCTTTCTC    748

BSNT_04440___    749 AAGATGATTATGTGCAG-CTCGTCTGCGATCAGCTTGAGATCATTCCGCC    797
                     ||||.||.||||| .|| ||.||.||.||||||||.||.||||||||.||
RBAM_027490__    749 AAGAAGAATATGT-AAGTCTTGTATGTGATCAGCTCGAAATCATTCCCCC    797

BSNT_04440___    798 TGAAATGATCGTCCACCGCATTACAGGTGACGGACCGATTGAGTTGATGA    847
                     .|||||||||||.|||||||||||.||.|||||.|||||.||.||.|||.
RBAM_027490__    798 GGAAATGATCGTTCACCGCATTACGGGAGACGGGCCGATCGAATTAATGG    847

BSNT_04440___    848 TCGGGCCAATGTGGAGCGTCAACAAATGGGAAGTGCTTGGCGCCATTAAT    897
                     ||||.||.||||||||||||||.||.||||||||.||.|||||||||.|.
RBAM_027490__    848 TCGGACCGATGTGGAGCGTCAATAAGTGGGAAGTACTGGGCGCCATTCAA    897

BSNT_04440___    898 AAAGAGCTAGAAAATCGAGGCAGCTATCAAGGAAAGTTCTTTCA-ACGGC    946
                     ||||||||.||||..|||||.|||||||||||.|||.|| |||| |..|.
RBAM_027490__    898 AAAGAGCTGGAAACACGAGGAAGCTATCAAGGGAAGCTC-TTCAGAAAGA    946

BSNT_04440___    947 TTGAGGAGGAATCAGCGCTATGA    969
                     |.|.||||||..|.||.||||||
RBAM_027490__    947 TCGGGGAGGAGACCGCCCTATGA    969


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