Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04440 and RBAM_027490
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:55
# Commandline: needle
# -asequence dna-align/BSNT_04440___ytqA.1.9828.seq
# -bsequence dna-align/RBAM_027490___ytqA.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04440___ytqA-RBAM_027490___ytqA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04440___ytqA-RBAM_027490___ytqA.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04440___ytqA
# 2: RBAM_027490___ytqA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 973
# Identity: 802/973 (82.4%)
# Similarity: 802/973 (82.4%)
# Gaps: 8/973 ( 0.8%)
# Score: 3297.0
#
#
#=======================================
BSNT_04440___ 1 GTGATGCAGAACAATCCTTTTCCTTATTCAAATACGGAAAAACGCTATCA 50
.|||...||||.||.|||||||||||||||||||||||||||||.||.||
RBAM_027490__ 1 TTGAACGAGAATAACCCTTTTCCTTATTCAAATACGGAAAAACGGTACCA 50
BSNT_04440___ 51 TACATTGAATTATCATCTCAGAGAACATTTCGGCCATAAGGTGTTTAAAG 100
||||||.|||||||||||..|.||.||||||||.|||||.||||||||||
RBAM_027490__ 51 TACATTAAATTATCATCTGCGGGAGCATTTCGGGCATAAAGTGTTTAAAG 100
BSNT_04440___ 101 TGGCGCTTGACGGCGGTTTTGACTGTCCAAATCGGGATGGCACCGTAGCC 150
|.|||||||||||||||||||||||.||.||||||||.|||||.||.||.
RBAM_027490__ 101 TCGCGCTTGACGGCGGTTTTGACTGCCCGAATCGGGACGGCACGGTTGCA 150
BSNT_04440___ 151 CACGGAGGCTGTACGTTTTGCAGCGCAGCAGGCTCCGGAGATTTTGCTGG 200
|||||||||||.||.||.||||||||.||.||||||||.||||||||.||
RBAM_027490__ 151 CACGGAGGCTGCACATTCTGCAGCGCGGCGGGCTCCGGCGATTTTGCCGG 200
BSNT_04440___ 201 AAACCGGACCGATGATTTAATTACGCAATTCCACGACATCAAAAACCGCA 250
.||.|||.|||||||.|||.|.||||||||.|||||.|||||||||||||
RBAM_027490__ 201 CAATCGGGCCGATGACTTACTCACGCAATTTCACGATATCAAAAACCGCA 250
BSNT_04440___ 251 TGCACGAAAAATGGAAGGACGGCAAGTACATCGCTTATTTTCAGGCTTTC 300
||||||||||.|||||.||||||||.||.|||||.|||||.||.||.|||
RBAM_027490__ 251 TGCACGAAAAGTGGAAAGACGGCAAATATATCGCATATTTCCAAGCGTTC 300
BSNT_04440___ 301 ACAAACACTCACGCCCCGGTTGAGGTGCTTCGTGAGAAATTCGAATCCGT 350
||.||.||.||.||||||||.||||.|||.||.||.||||||||||||||
RBAM_027490__ 301 ACGAATACGCATGCCCCGGTAGAGGAGCTGCGAGAAAAATTCGAATCCGT 350
BSNT_04440___ 351 CCTC--GCTTTAGATGATGTGGTCGGCATTTCGATCGCCACACGCCCGGA 398
|||| |||| ||.|..||.||||||||.||||||||.||.||.|||||
RBAM_027490__ 351 CCTCAAGCTT--GACGGCGTTGTCGGCATGTCGATCGCGACCCGTCCGGA 398
BSNT_04440___ 399 CTGTCTGCCTGATGATGTCGTTGATTACTTGGCAGAGCTGAATGAACGCA 448
|||.||.||.||.||||||||.||.||.|||||.||.||||||||.||.|
RBAM_027490__ 399 CTGCCTTCCGGACGATGTCGTGGAATATTTGGCCGAACTGAATGAGCGGA 448
BSNT_04440___ 449 CCTATTTGTGGGTGGAGCTTGGGCTTCAAACAGTTCATGAACGGACTGCA 498
|||||||||||||.||.||.|||||.||.||.||.|||||.|||||.||.
RBAM_027490__ 449 CCTATTTGTGGGTTGAACTCGGGCTGCAGACCGTGCATGAGCGGACCGCC 498
BSNT_04440___ 499 CTTCTGATCAACCGCGCACATGATTTTAACTGCTATGTGGAAGGCGTCAA 548
|||||||||||||||||.|||||||||.||||||||||.||.||.|||||
RBAM_027490__ 499 CTTCTGATCAACCGCGCCCATGATTTTGACTGCTATGTTGAGGGTGTCAA 548
BSNT_04440___ 549 TAAATTAAGAAAACACGGCATACGTGTCTGCTCGCATATTATCAATGGGC 598
||||.|.||||||||||||||.||.||.||.||.|||||.||.||.||||
RBAM_027490__ 549 TAAACTGAGAAAACACGGCATCCGCGTTTGTTCCCATATCATTAACGGGC 598
BSNT_04440___ 599 TGCCTTTGGAAGACCGGGACATGATGATGGAAACGGCAAAGGCCGTCGCA 648
|.||..|.|||.||.||||||||||||||||.|||||.||.||||||||.
RBAM_027490__ 599 TTCCGCTTGAAAACAGGGACATGATGATGGAGACGGCCAAAGCCGTCGCT 648
BSNT_04440___ 649 GATTTGGATGTCCAGGGCATTAAAATCCATCTGCTTCACCTACTGAAAGG 698
|||||||||||.||.|||||||||||.||.|||||||||.||.|.|||||
RBAM_027490__ 649 GATTTGGATGTGCAAGGCATTAAAATTCACCTGCTTCACTTATTAAAAGG 698
BSNT_04440___ 699 CACGCCGATGGTCAAACAATATGAAAAGGGCAAGCTGGAATTTCTTTCTC 748
|||.||||||||.||.|||||||||||.||.||||||||.||.|||||||
RBAM_027490__ 699 CACACCGATGGTGAAGCAATATGAAAAAGGAAAGCTGGAGTTCCTTTCTC 748
BSNT_04440___ 749 AAGATGATTATGTGCAG-CTCGTCTGCGATCAGCTTGAGATCATTCCGCC 797
||||.||.||||| .|| ||.||.||.||||||||.||.||||||||.||
RBAM_027490__ 749 AAGAAGAATATGT-AAGTCTTGTATGTGATCAGCTCGAAATCATTCCCCC 797
BSNT_04440___ 798 TGAAATGATCGTCCACCGCATTACAGGTGACGGACCGATTGAGTTGATGA 847
.|||||||||||.|||||||||||.||.|||||.|||||.||.||.|||.
RBAM_027490__ 798 GGAAATGATCGTTCACCGCATTACGGGAGACGGGCCGATCGAATTAATGG 847
BSNT_04440___ 848 TCGGGCCAATGTGGAGCGTCAACAAATGGGAAGTGCTTGGCGCCATTAAT 897
||||.||.||||||||||||||.||.||||||||.||.|||||||||.|.
RBAM_027490__ 848 TCGGACCGATGTGGAGCGTCAATAAGTGGGAAGTACTGGGCGCCATTCAA 897
BSNT_04440___ 898 AAAGAGCTAGAAAATCGAGGCAGCTATCAAGGAAAGTTCTTTCA-ACGGC 946
||||||||.||||..|||||.|||||||||||.|||.|| |||| |..|.
RBAM_027490__ 898 AAAGAGCTGGAAACACGAGGAAGCTATCAAGGGAAGCTC-TTCAGAAAGA 946
BSNT_04440___ 947 TTGAGGAGGAATCAGCGCTATGA 969
|.|.||||||..|.||.||||||
RBAM_027490__ 947 TCGGGGAGGAGACCGCCCTATGA 969
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