Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04434 and RBAM_027380
See
Amino acid alignment /
Visit
BSNT_04434 in genome browser /
Return to
Orthologue table
########################################
# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:54
# Commandline: needle
# -asequence dna-align/BSNT_04434___ytrC.1.9828.seq
# -bsequence dna-align/RBAM_027380___ytrC.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04434___ytrC-RBAM_027380___ytrC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04434___ytrC-RBAM_027380___ytrC.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04434___ytrC
# 2: RBAM_027380___ytrC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1135
# Identity: 624/1135 (55.0%)
# Similarity: 624/1135 (55.0%)
# Gaps: 296/1135 (26.1%)
# Score: 1475.5
#
#
#=======================================
BSNT_04434___ 1 ATGGTAGACCGAGGTCTCCTCTATCGAGAGTGGAAGCAGAATC-AAGTG- 48
|||||||||.|.||..|.||.||..|.||.|||..|||||||| ||.||
RBAM_027380__ 1 ATGGTAGACAGGGGATTGCTGTACAGGGAATGGGTGCAGAATCGAACTGT 50
BSNT_04434___ 49 ----GTGAT--------TTTGTTAAGTATCGTG---------TTTTTAGT 77
||||| |||.||.|| .||.| |||..|||
RBAM_027380__ 51 TCTTGTGATGGTCGGCCTTTTTTTAG--CCGCGGTCAATCCATTTGAAGT 98
BSNT_04434___ 78 GTTGGCAAAT-CCTTTAAC-GATTTATCACTCATATTCTTTAAACGAGGC 125
||| |||| || ||.| |.||||||| ||||
RBAM_027380__ 99 GTT---AAATACC--TATCTGGTTTATCA-----------------AGGC 126
BSNT_04434___ 126 ATGCCTAGCACATTCAGATCCGAA--ATTTTGTACATTTTTTGTAGATTA 173
||.|| |.|||..| |.||| ||.|||||..||||.|||..|||
RBAM_027380__ 127 -TGTCT-GGACACCC----CGGAAGCATATTGTAACTTTTATGTGAATT- 169
BSNT_04434___ 174 CCAC-ATAGACAGCTTGAT--TCAAATT-AATTGGG-------TGATAGG 212
| .|.||.|||...|| |.||.|| ||.|||| ||
RBAM_027380__ 170 ---CTTTGGAGAGCGGAATGCTGAACTTGAACTGGGCGCCCGCTG----- 211
BSNT_04434___ 213 GATTATATTGGCAGTATGTTTGATCGGGCTTGAACGTTCGAGAGGTACGA 262
|.||.||.||.||.||.||..||||.||.||.|||.|||.||||||||
RBAM_027380__ 212 --TCATCTTAGCGGTTTGCTTATTCGGACTGGAGCGTACGAAAGGTACGA 259
BSNT_04434___ 263 TGGACTTTT----TGTTAGGTCTTCCATATAAAAGAAAC-------CAAA 301
|.|| | ||||..||||.||.||| .| ||..
RBAM_027380__ 260 TTGA----TACGCTGTTCAGTCTGCCTTAT-------TCCCGCGCTCAGG 298
BSNT_04434___ 302 TTTTCCAAACGAAATTTTGGTTAGGCGCGGTTGTTATT----GTGTTTTC 347
|.||.||.||.|||||||||.|.||.||||..||.||| |.| |
RBAM_027380__ 299 TGTTTCACACTAAATTTTGGCTCGGGGCGGCGGTCATTACCGGCG----C 344
BSNT_04434___ 348 GCAATTGGTCGGATTTTTTTTGGCATG-GCTGCTGATTCTTTTCTTAAAA 396
.||..||.||||.|......|||| || ||||||.||||||.|.|||||.
RBAM_027380__ 345 TCAGGTGATCGGCTACGGGCTGGC-TGAGCTGCTCATTCTTCTGTTAAAG 393
BSNT_04434___ 397 CCTGAACAAGTAAACTTTTTTGAACATGGAAGC------------ATTG- 433
|||||.|..|||.|.||.||..|.|||...||| ||||
RBAM_027380__ 394 CCTGAGCGCGTATATTTCTTCCACCATTACAGCGTCGGAGAGATTATTGT 443
BSNT_04434___ 434 --GTGTTATGATCACTAGCATTATGTTTTACTCATTAGTAATGGCCGCAG 481
|||||.|| || ||||| ||||.||...|..|||||
RBAM_027380__ 444 AAGTGTTTTG-------GC------TTTTA--CATTGGTTGCGAGCGCAG 478
BSNT_04434___ 482 GGACGTTAGCTGGAAACGCTTTTGCTCAGTTGTTGACAGCTTTTGCAACT 531
|....|||.|.||.||..|.||.||.|||.||||.||.||.|||||....
RBAM_027380__ 479 GCTGCTTAACGGGGAATACGTTCGCCCAGCTGTTAACGGCGTTTGCCGTG 528
BSNT_04434___ 532 TCGGTATTGCCGTATTTGATTAT--CGTTTTGCCATTTTCTAATATAGAG 579
|||.||..|||.||..||||||| || .||||..|.||.|||.||||.
RBAM_027380__ 529 TCGATAGCGCCTTACCTGATTATTACG--CTGCCCCTGTCCAATGTAGAA 576
BSNT_04434___ 580 ATTATCTCAGGGGT------------------------------------ 593
.|.||||..||.||
RBAM_027380__ 577 GTCATCTTCGGAGTCAGCATGTATGAGCTGATGCCGTCAGTCGAGGCTTA 626
BSNT_04434___ 594 --TCAAATTTGGAAAC--TCTTCCCTAACATTGAATATTACTTCGATTTT 639
||||| |.|||| |||| .||.|| ||||| ||.|..
RBAM_027380__ 627 TCTCAAA---GTAAACAATCTT-------TTTCAA---TACTT-GAATCC 662
BSNT_04434___ 640 GAAAATAATTTGATGGACTTTTCTCCAATTGCTTATGTGGATTCAAGTTG 689
|| |.|||.||.|| |||.||..|||
RBAM_027380__ 663 GA--------TCATGTACATT------------------GATACAGATTG 686
BSNT_04434___ 690 GGTGGCGGAAAGTAAATATTTATTACTTATCCCTGCAGTGATGAGTATTC 739
|||..|.|..||.||.|||.|||||||.|||||.|||||||||||.|||.
RBAM_027380__ 687 GGTATCTGCCAGCAAGTATATATTACTCATCCCGGCAGTGATGAGCATTG 736
BSNT_04434___ 740 TCTTTTATTTCATTGGATATATCAGTTT---TATAAAACATCATAATG-- 784
|.||||||..||||||.| |.||| ||| .||| |
RBAM_027380__ 737 TATTTTATGCCATTGGGT-----ACTTTTGCTAT-----GTCA----GGC 772
BSNT_04434___ 785 AGC----GTAATGGATAC-------TTTTTCTTATGGAAAACA--TTAGA 821
||| |.||.||| || |||||| |.||| |.||| || ||
RBAM_027380__ 773 AGCCGGTGGAACGGA-ACGGCCGTTTTTTTC-TCTGG-AGACAGCTT-GA 818
BSNT_04434___ 822 TCGGCCTATCCAAATCCTTGTCATCGTG-TTAGGAATC------CTGGGT 864
.|||||.||.||.| ||| |.||| ||| .|||| ||.|||
RBAM_027380__ 819 CCGGCCCATTCAGA---TTG---TGGTGATTA-TAATCGCCGTTCTCGGT 861
BSNT_04434___ 865 TTTGGTATAGTGGGGCATTCTGCGGGTGAATCCATAGCGGGTTACA--TT 912
|||||..|.|.||||.|.||..|||| .|||| .|.|.||| .|
RBAM_027380__ 862 TTTGGCCTGGCGGGGTACTCGACGGG-----ACATA--CGATGACAGGGT 904
BSNT_04434___ 913 AT-----CGGAATGATTATCGGAGGAATTGTAGGATTTTTGATCAGTTAT 957
|| |||.||||||.||||.|||....|.||||||||..||||||||
RBAM_027380__ 905 ATGTGGCCGGGATGATTGTCGGGGGAGCGATCGGATTTTTAGTCAGTTAT 954
BSNT_04434___ 958 TTTTCCATCTTTAAAAAAGTAAGA--CAT---TAA 987
|||...||.|.||||||| |.|| ||| |||
RBAM_027380__ 955 TTTGTGATTTATAAAAAA--ACGAAGCATGTGTAA 987
#---------------------------------------
#---------------------------------------
Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.