Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_04426 and RBAM_027300

See Amino acid alignment / Visit BSNT_04426 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:26:54
# Commandline: needle
#    -asequence dna-align/BSNT_04426___ytsD.1.9828.seq
#    -bsequence dna-align/RBAM_027300___bceB.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04426___ytsD-RBAM_027300___bceB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04426___ytsD-RBAM_027300___bceB.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04426___ytsD
# 2: RBAM_027300___bceB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 2076
# Identity:    1336/2076 (64.4%)
# Similarity:  1336/2076 (64.4%)
# Gaps:         270/2076 (13.0%)
# Score: 3905.0
# 
#
#=======================================

BSNT_04426___      1 ATGAACATTAATCAGCTCATCCTGCGAAATTTGAAAAAGAATCTCCGGAA     50
                     ||||..|||.||||..|.|||.|.|..||..|||||||||||.|   |||
RBAM_027300__      1 ATGAGTATTCATCATTTGATCTTCCAGAACCTGAAAAAGAATAT---GAA     47

BSNT_04426___     51 TTACTATT---TGTATGTGTTTGCGCTCATCTTTAGCGTGGCGCTTTATT     97
                     ..||||||   |.||.||.||||||||..|.||.||||..||.|||||||
RBAM_027300__     48 AAACTATTACCTTTACGTTTTTGCGCTGGTGTTCAGCGCCGCCCTTTATT     97

BSNT_04426___     98 TCGCCTTTGTCACGCTGCAGTATGATCCAGCAATTAACGAAGTG-AAGGC    146
                     ||||.|||||||||.||||.||.||||||||..||.|.|||.|| ||.||
RBAM_027300__     98 TCGCGTTTGTCACGATGCAATACGATCCAGCGCTTGATGAAATGAAAAGC    147

BSNT_04426___    147 TTCAATCAAGGGAGCCGCGGCTATTAAAACCGCTTCGATTTTGCTTGTGG    196
                      ||.||.||.|||||.|||||.||.....||||.||..|..|||||||||
RBAM_027300__    148 -TCCATAAAAGGAGCGGCGGCAATCCGGGCCGCCTCTGTACTGCTTGTGG    196

BSNT_04426___    197 CTGTTGTGGCGATCTTCATTTTATATGCCAATACGATTTTTATTAAGAGA    246
                     |..|.|||.||.|.||..|||||||.|||||.||.|||||||||||   |
RBAM_027300__    197 CGATCGTGTCGGTATTTCTTTTATACGCCAACACCATTTTTATTAA---A    243

BSNT_04426___    247 CGGAGTAAA-------GAAATCGGGCTGTTTCAATTGATTGGAATGACGA    289
                     |||.|           ||||||||..|.||.|.|||.||.||.|||||||
RBAM_027300__    244 CGGCG----CGGCCGGGAAATCGGCTTATTCCGATTAATCGGCATGACGA    289

BSNT_04426___    290 A---GCATAAAATTTTTAGCATCTTAAGTGCAGAAAATGTCATGCTGTAT    336
                     |   ||   |.|||||..||||..|.||..||||||||.||||..|||||
RBAM_027300__    290 AAATGC---ACATTTTCCGCATACTCAGCACAGAAAATTTCATTTTGTAT    336

BSNT_04426___    337 TTCGGTTC-ATTAGCGATCGGGGTAGCGGCCGGGTTTTCGATATCGAAGC    385
                     |||||.|| |||.| ||||||..|....|||||.|||||..|.|||||..
RBAM_027300__    337 TTCGGATCGATTTG-GATCGGTATTTTTGCCGGCTTTTCTCTCTCGAAAT    385

BSNT_04426___    386 T-TGTCTTGATGATTCTGTTCAAAATTGTCGATGTCAAAGCGGATGCGAA    434
                     | ||| .|||||||.|||||..|.|..||||.|||.|||||...||....
RBAM_027300__    386 TATGT-ATGATGATGCTGTTTCATACAGTCGGTGTGAAAGCCTCTGTCTC    434

BSNT_04426___    435 ACTGCATTTTTCTGAGC-AGGCTTTGGTCCAAACGGTCATTGTGTTCTGC    483
                     ||||..|||||| .||| ||||..|.||.||.|||.|.||||||||| |.
RBAM_027300__    435 ACTGTTTTTTTC-AAGCAAGGCGCTCGTTCAGACGTTAATTGTGTTC-GG    482

BSNT_04426___    484 GGC-ATTTACCTTTTGATCATGATCATGAATTA--TACGTTTATCAAAAA    530
                     ||| ||||||.|..||||.|||||.||||||||  ||  |||||.|||..
RBAM_027300__    483 GGCGATTTACGTGCTGATTATGATGATGAATTACTTA--TTTATTAAACG    530

BSNT_04426___    531 ACAGAGTATTTTATCTTTGTTTAAAGTAACGTCCTCCACTGAAGACAAAG    580
                     .||.||.|||||.|||||.||||||....||||.||..|     |.||||
RBAM_027300__    531 GCAAAGCATTTTGTCTTTATTTAAAACCGCGTCATCGTC-----AGAAAG    575

BSNT_04426___    581 TG----AAGAAAATATCATTTTTC-------CAAATGCTGATCGGCGCTT    619
                     .|    ||||      |...||||       ||.|||..||||||.|.|.
RBAM_027300__    576 CGGCATAAGA------CGGCTTTCTTGGGTGCAGATGTCGATCGGTGTTG    619

BSNT_04426___    620 TAGGCATCGTGTTGATTTTGACAGGATACTAT---GTGTCTTCTGAGCTG    666
                     |.||.||.|.|...|||.|..|.||   ||||   |||||..|.||..|.
RBAM_027300__    620 TCGGTATTGCGGCCATTATCGCCGG---CTATGCCGTGTCCGCGGATTTA    666

BSNT_04426___    667 TTTGGCGGAAAATTTAAGACCATTAATGAACTGTTTGTTGCGATGAGCTT    716
                     ||.||.||.|..||||.||.|||.||||||||||||...||.|||...||
RBAM_027300__    667 TTCGGAGGCAGTTTTACGAGCATGAATGAACTGTTTTCGGCCATGGTGTT    716

BSNT_04426___    717 CATTCTGGGGAGCGTCATTATCGGGACGTTTTTGTTTTATAAAGGATCAG    766
                     .|||||.||....|||||||||||.||.|.|.|||||||||||||.||.|
RBAM_027300__    717 TATTCTCGGCTCGGTCATTATCGGAACCTATCTGTTTTATAAAGGTTCGG    766

BSNT_04426___    767 TTACGTTTATCTCGAATATCATTCGAAAAAGCAAGGGCGGCTACTTAAAT    816
                     |.|..|||.|..|.|||.||||.||.|||...||.|||||.||..|.|||
RBAM_027300__    767 TCAGCTTTCTGGCAAATCTCATCCGGAAATCAAAAGGCGGGTATCTGAAT    816

BSNT_04426___    817 ATTTCTGAGGTCCTGTCACTGTCATCAATCATGTTCAGAATGAAATCGAA    866
                     .|...|||.||.|||||..|||||||.|||||||||.|.|||||.||.||
RBAM_027300__    817 GTCAGTGAAGTGCTGTCTTTGTCATCCATCATGTTCCGGATGAAGTCAAA    866

BSNT_04426___    867 TGCGCTGCTGCTGACGATTATTACAACCGTTTCAGCACTTGCGATCGG--    914
                     .||..|.|||||||||||||||||.||..||||.||.||.||.|||||  
RBAM_027300__    867 CGCCGTCCTGCTGACGATTATTACGACTCTTTCGGCGCTGGCAATCGGTT    916

BSNT_04426___    915 -GCTGTTATCTCTT---GCATATATCTCGTATTACTCGTCAGAAAAGACC    960
                      ||||     ||||   || |||||||||||.||.||..|.|||||..|.
RBAM_027300__    917 TGCTG-----TCTTTAAGC-TATATCTCGTACTATTCCGCGGAAAAATCG    960

BSNT_04426___    961 GCTGAACAAAATGTAGCGGCTGATTTTTCATTCATGAATGAGAA------   1004
                     |||||.||||||..|||.||.||.|||.|.||      |||.||      
RBAM_027300__    961 GCTGAGCAAAATACAGCCGCGGACTTTGCGTT------TGATAACCAAAA   1004

BSNT_04426___   1005 --AGA-TGCCAAGTTATTTGAAAACAG----ATTGAGGGAAAGC------   1041
                       ||| ||   |.|.||||    ||.|    |||||.|.|||.|      
RBAM_027300__   1005 GGAGACTG---ACTCATTT----ACCGCTTTATTGAAGAAAAACGGAATT   1047

BSNT_04426___   1042 -AACATCTCGTTTGTAAAAAAGGCAACACCTGTCCTGCAAGCAAATGTTG   1090
                      ||||....||   .||||.|..|||.||    |.|.|||||...|||  
RBAM_027300__   1048 GAACACAAAGT---GAAAACAATCAAGAC----CATTCAAGCCGGTGT--   1088

BSNT_04426___   1091 ACATTGCAAATATTATGGATGGAAC-TCCGAAA----GAGATGCAGGGCG   1135
                           |||    ||||.|  |||| ||..|||    ||.|||.|..|| 
RBAM_027300__   1089 ------CAA----TATGAA--GAACATCATAAACGGCGACATGAATAGC-   1125

BSNT_04426___   1136 ATCCCAGCAATA----TGCAGCTT---GCTG----TTGTTAGCGACAAAG   1174
                      |..||.|||.|    |.||||||   ||||    ||.|.|||||.||||
RBAM_027300__   1126 -TTTCAACAAGACCCGTCCAGCTTGGCGCTGCCGATTATAAGCGAGAAAG   1174

BSNT_04426___   1175 ATGTAAAAGGAGTCGATGTGGCGG------CT---GGAGAAGCCGTTTTC   1215
                     |.|.|.||||         |.|||      ||   |||||||||||.||.
RBAM_027300__   1175 ACGCAGAAGG---------GACGGAGCTTTCTGACGGAGAAGCCGTGTTT   1215

BSNT_04426___   1216 TCAGGATACACCGACTTGCTGCAAAAAATAATGGTTTTCAAGGACTCTG-   1264
                     .|.|||||.|..||..||.|| ||||.||     ||.||   ||| ||| 
RBAM_027300__   1216 ACCGGATATAATGATATGATG-AAAAGAT-----TTCTC---GAC-CTGA   1255

BSNT_04426___   1265 ----GT---GTT--ATTAAAATAAAAAGCAAACATGAGACGCAGCCATTA   1305
                         ||   |.|  |||.|.|||||..|||||      |||.|     ||
RBAM_027300__   1256 AAACGTCAGGATCCATTGATATAAACGGCAAA------ACGGA-----TA   1294

BSNT_04426___   1306 AAA-----------TATAAAGGATT-AAGAGAAGAGTTTCTTGTATCCTA   1343
                     |||           |||||.||.|| |||| |.||.||.|||.|.||.||
RBAM_027300__   1295 AAATACCGCTGGCGTATAAGGGCTTGAAGA-ACGACTTCCTTCTGTCATA   1343

BSNT_04426___   1344 CACGTTTACAAGCGG-GGGCATGCCCGCTGTCATTGTGGATGACAGCC--   1390
                     .||.||||||||||| |||| ||||..|.||.||.||      ||.||  
RBAM_027300__   1344 TACATTTACAAGCGGAGGGC-TGCCGACCGTTATCGT------CACCCAG   1386

BSNT_04426___   1391 ----TGTTTAAACAGCTGGACAAGGATAAGGACCCCCGCATTCAGCTGGC   1436
                         |.|||.|.|.|.|.||.||.||||..|||||...||||||   ||.
RBAM_027300__   1387 CAGGTATTTGACCGGATCGAAAAAGATATCGACCCGTCCATTCA---GGG   1433

BSNT_04426___   1437 GCAATCTACA----TTTATCGGCGTCAATGTGAAACATGACGATCAAATG   1482
                     ..|||| |.|    |||.|||||.|.|...|.||||.|||.||..|.||.
RBAM_027300__   1434 AAAATC-AAATCGGTTTTTCGGCATTACACTCAAACGTGAAGAGGACATC   1482

BSNT_04426___   1483 GAAAAAGCAAATGAGCTTTTTCAACAGGTGAACAA--------GAAAAAC   1524
                     .|||||||..|||..||.||||||..|..|.||.|        |     |
RBAM_027300__   1483 CAAAAAGCTGATGGTCTGTTTCAAGCGCAGCACTATTCTGACGG-----C   1527

BSNT_04426___   1525 GAGCATTTATCAAGACTGGATACAAGCGCTG---CGCA----AAAATCAC   1567
                     |.||   |.|||..|.|.||   ||..||||   |.||    ||||.|| 
RBAM_027300__   1528 GCGC---TTTCACAATTTGA---AACGGCTGACACCCAAAAGAAAAACA-   1570

BSNT_04426___   1568 TGTTTGGTATGGTGATGTTCATCGTCGGCTTCTTAGGGTTAACGTTCCTG   1617
                        |.||..||.|.|||||.||.||||||||.||.||||||||.||.|||
RBAM_027300__   1571 ---TGGGGCTGATCATGTTTATTGTCGGCTTTTTGGGGTTAACCTTTCTG   1617

BSNT_04426___   1618 ATTACATCAGGTTGTATCCTTTATTTTAAACAAATGGGTGAAAGTGAAGA   1667
                     ||.||.|||||.||||||||||||||||||||||||||.||..||||.||
RBAM_027300__   1618 ATCACCTCAGGCTGTATCCTTTATTTTAAACAAATGGGCGAGTGTGAGGA   1667

BSNT_04426___   1668 TGA-AAAACCGAGCTATACGATTTTAAGAAAACTCGGTTTTACGCAGGGC   1716
                     ||| ||..|.|| .||.|||||.||..|.||.|||||.||.||...|||.
RBAM_027300__   1668 TGAGAAGGCTGA-TTACACGATATTGCGGAAGCTCGGCTTCACAACGGGA   1716

BSNT_04426___   1717 GACCTGATAAAGGGGATACGCATCAAACAAATGTACAACTTCGGCATTCC   1766
                     ||.|||.|.||.||.||.|||...||.||...|||..|.||||||||.||
RBAM_027300__   1717 GATCTGCTGAAAGGCATCCGCCGGAAGCAGGCGTATCATTTCGGCATCCC   1766

BSNT_04426___   1767 GCTCGTTGTCGGCCTCTTCCACAGTTACTTTGCCGTCCAATCCGGCTGGT   1816
                     |||||||.||||.||.||||||||.||.||||||||.||.||.||.||||
RBAM_027300__   1767 GCTCGTTCTCGGGCTGTTCCACAGCTATTTTGCCGTTCAGTCAGGATGGT   1816

BSNT_04426___   1817 TCTTATTCGGATCAGAGGTATGGGCGCCCATGATTATGGTGATGGTGTTA   1866
                     |.|||||||||.|.||.||.|||.||||.|||||.||.||.||||.|.|.
RBAM_027300__   1817 TTTTATTCGGAACGGAAGTGTGGACGCCGATGATCATCGTCATGGCGCTG   1866

BSNT_04426___   1867 TATACTGC-GCTCTACTCCATTTTTGGTTTTCTGTCAGTTCTTTATTATA   1915
                     ||||| || |||.||||||||.||.||..|.|||||.||.||.||.||||
RBAM_027300__   1867 TATAC-GCTGCTGTACTCCATCTTCGGCATGCTGTCGGTGCTATACTATA   1915

BSNT_04426___   1916 AGAAGGTCATTAAATCGTCGTTGTGA   1941
                     |.|||||||||.||||..|.||||.|
RBAM_027300__   1916 AAAAGGTCATTCAATCCGCCTTGTAA   1941


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