Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04426 and RBAM_027300
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:54
# Commandline: needle
# -asequence dna-align/BSNT_04426___ytsD.1.9828.seq
# -bsequence dna-align/RBAM_027300___bceB.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04426___ytsD-RBAM_027300___bceB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04426___ytsD-RBAM_027300___bceB.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04426___ytsD
# 2: RBAM_027300___bceB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 2076
# Identity: 1336/2076 (64.4%)
# Similarity: 1336/2076 (64.4%)
# Gaps: 270/2076 (13.0%)
# Score: 3905.0
#
#
#=======================================
BSNT_04426___ 1 ATGAACATTAATCAGCTCATCCTGCGAAATTTGAAAAAGAATCTCCGGAA 50
||||..|||.||||..|.|||.|.|..||..|||||||||||.| |||
RBAM_027300__ 1 ATGAGTATTCATCATTTGATCTTCCAGAACCTGAAAAAGAATAT---GAA 47
BSNT_04426___ 51 TTACTATT---TGTATGTGTTTGCGCTCATCTTTAGCGTGGCGCTTTATT 97
..|||||| |.||.||.||||||||..|.||.||||..||.|||||||
RBAM_027300__ 48 AAACTATTACCTTTACGTTTTTGCGCTGGTGTTCAGCGCCGCCCTTTATT 97
BSNT_04426___ 98 TCGCCTTTGTCACGCTGCAGTATGATCCAGCAATTAACGAAGTG-AAGGC 146
||||.|||||||||.||||.||.||||||||..||.|.|||.|| ||.||
RBAM_027300__ 98 TCGCGTTTGTCACGATGCAATACGATCCAGCGCTTGATGAAATGAAAAGC 147
BSNT_04426___ 147 TTCAATCAAGGGAGCCGCGGCTATTAAAACCGCTTCGATTTTGCTTGTGG 196
||.||.||.|||||.|||||.||.....||||.||..|..|||||||||
RBAM_027300__ 148 -TCCATAAAAGGAGCGGCGGCAATCCGGGCCGCCTCTGTACTGCTTGTGG 196
BSNT_04426___ 197 CTGTTGTGGCGATCTTCATTTTATATGCCAATACGATTTTTATTAAGAGA 246
|..|.|||.||.|.||..|||||||.|||||.||.||||||||||| |
RBAM_027300__ 197 CGATCGTGTCGGTATTTCTTTTATACGCCAACACCATTTTTATTAA---A 243
BSNT_04426___ 247 CGGAGTAAA-------GAAATCGGGCTGTTTCAATTGATTGGAATGACGA 289
|||.| ||||||||..|.||.|.|||.||.||.|||||||
RBAM_027300__ 244 CGGCG----CGGCCGGGAAATCGGCTTATTCCGATTAATCGGCATGACGA 289
BSNT_04426___ 290 A---GCATAAAATTTTTAGCATCTTAAGTGCAGAAAATGTCATGCTGTAT 336
| || |.|||||..||||..|.||..||||||||.||||..|||||
RBAM_027300__ 290 AAATGC---ACATTTTCCGCATACTCAGCACAGAAAATTTCATTTTGTAT 336
BSNT_04426___ 337 TTCGGTTC-ATTAGCGATCGGGGTAGCGGCCGGGTTTTCGATATCGAAGC 385
|||||.|| |||.| ||||||..|....|||||.|||||..|.|||||..
RBAM_027300__ 337 TTCGGATCGATTTG-GATCGGTATTTTTGCCGGCTTTTCTCTCTCGAAAT 385
BSNT_04426___ 386 T-TGTCTTGATGATTCTGTTCAAAATTGTCGATGTCAAAGCGGATGCGAA 434
| ||| .|||||||.|||||..|.|..||||.|||.|||||...||....
RBAM_027300__ 386 TATGT-ATGATGATGCTGTTTCATACAGTCGGTGTGAAAGCCTCTGTCTC 434
BSNT_04426___ 435 ACTGCATTTTTCTGAGC-AGGCTTTGGTCCAAACGGTCATTGTGTTCTGC 483
||||..|||||| .||| ||||..|.||.||.|||.|.||||||||| |.
RBAM_027300__ 435 ACTGTTTTTTTC-AAGCAAGGCGCTCGTTCAGACGTTAATTGTGTTC-GG 482
BSNT_04426___ 484 GGC-ATTTACCTTTTGATCATGATCATGAATTA--TACGTTTATCAAAAA 530
||| ||||||.|..||||.|||||.|||||||| || |||||.|||..
RBAM_027300__ 483 GGCGATTTACGTGCTGATTATGATGATGAATTACTTA--TTTATTAAACG 530
BSNT_04426___ 531 ACAGAGTATTTTATCTTTGTTTAAAGTAACGTCCTCCACTGAAGACAAAG 580
.||.||.|||||.|||||.||||||....||||.||..| |.||||
RBAM_027300__ 531 GCAAAGCATTTTGTCTTTATTTAAAACCGCGTCATCGTC-----AGAAAG 575
BSNT_04426___ 581 TG----AAGAAAATATCATTTTTC-------CAAATGCTGATCGGCGCTT 619
.| |||| |...|||| ||.|||..||||||.|.|.
RBAM_027300__ 576 CGGCATAAGA------CGGCTTTCTTGGGTGCAGATGTCGATCGGTGTTG 619
BSNT_04426___ 620 TAGGCATCGTGTTGATTTTGACAGGATACTAT---GTGTCTTCTGAGCTG 666
|.||.||.|.|...|||.|..|.|| |||| |||||..|.||..|.
RBAM_027300__ 620 TCGGTATTGCGGCCATTATCGCCGG---CTATGCCGTGTCCGCGGATTTA 666
BSNT_04426___ 667 TTTGGCGGAAAATTTAAGACCATTAATGAACTGTTTGTTGCGATGAGCTT 716
||.||.||.|..||||.||.|||.||||||||||||...||.|||...||
RBAM_027300__ 667 TTCGGAGGCAGTTTTACGAGCATGAATGAACTGTTTTCGGCCATGGTGTT 716
BSNT_04426___ 717 CATTCTGGGGAGCGTCATTATCGGGACGTTTTTGTTTTATAAAGGATCAG 766
.|||||.||....|||||||||||.||.|.|.|||||||||||||.||.|
RBAM_027300__ 717 TATTCTCGGCTCGGTCATTATCGGAACCTATCTGTTTTATAAAGGTTCGG 766
BSNT_04426___ 767 TTACGTTTATCTCGAATATCATTCGAAAAAGCAAGGGCGGCTACTTAAAT 816
|.|..|||.|..|.|||.||||.||.|||...||.|||||.||..|.|||
RBAM_027300__ 767 TCAGCTTTCTGGCAAATCTCATCCGGAAATCAAAAGGCGGGTATCTGAAT 816
BSNT_04426___ 817 ATTTCTGAGGTCCTGTCACTGTCATCAATCATGTTCAGAATGAAATCGAA 866
.|...|||.||.|||||..|||||||.|||||||||.|.|||||.||.||
RBAM_027300__ 817 GTCAGTGAAGTGCTGTCTTTGTCATCCATCATGTTCCGGATGAAGTCAAA 866
BSNT_04426___ 867 TGCGCTGCTGCTGACGATTATTACAACCGTTTCAGCACTTGCGATCGG-- 914
.||..|.|||||||||||||||||.||..||||.||.||.||.|||||
RBAM_027300__ 867 CGCCGTCCTGCTGACGATTATTACGACTCTTTCGGCGCTGGCAATCGGTT 916
BSNT_04426___ 915 -GCTGTTATCTCTT---GCATATATCTCGTATTACTCGTCAGAAAAGACC 960
|||| |||| || |||||||||||.||.||..|.|||||..|.
RBAM_027300__ 917 TGCTG-----TCTTTAAGC-TATATCTCGTACTATTCCGCGGAAAAATCG 960
BSNT_04426___ 961 GCTGAACAAAATGTAGCGGCTGATTTTTCATTCATGAATGAGAA------ 1004
|||||.||||||..|||.||.||.|||.|.|| |||.||
RBAM_027300__ 961 GCTGAGCAAAATACAGCCGCGGACTTTGCGTT------TGATAACCAAAA 1004
BSNT_04426___ 1005 --AGA-TGCCAAGTTATTTGAAAACAG----ATTGAGGGAAAGC------ 1041
||| || |.|.|||| ||.| |||||.|.|||.|
RBAM_027300__ 1005 GGAGACTG---ACTCATTT----ACCGCTTTATTGAAGAAAAACGGAATT 1047
BSNT_04426___ 1042 -AACATCTCGTTTGTAAAAAAGGCAACACCTGTCCTGCAAGCAAATGTTG 1090
||||....|| .||||.|..|||.|| |.|.|||||...|||
RBAM_027300__ 1048 GAACACAAAGT---GAAAACAATCAAGAC----CATTCAAGCCGGTGT-- 1088
BSNT_04426___ 1091 ACATTGCAAATATTATGGATGGAAC-TCCGAAA----GAGATGCAGGGCG 1135
||| ||||.| |||| ||..||| ||.|||.|..||
RBAM_027300__ 1089 ------CAA----TATGAA--GAACATCATAAACGGCGACATGAATAGC- 1125
BSNT_04426___ 1136 ATCCCAGCAATA----TGCAGCTT---GCTG----TTGTTAGCGACAAAG 1174
|..||.|||.| |.|||||| |||| ||.|.|||||.||||
RBAM_027300__ 1126 -TTTCAACAAGACCCGTCCAGCTTGGCGCTGCCGATTATAAGCGAGAAAG 1174
BSNT_04426___ 1175 ATGTAAAAGGAGTCGATGTGGCGG------CT---GGAGAAGCCGTTTTC 1215
|.|.|.|||| |.||| || |||||||||||.||.
RBAM_027300__ 1175 ACGCAGAAGG---------GACGGAGCTTTCTGACGGAGAAGCCGTGTTT 1215
BSNT_04426___ 1216 TCAGGATACACCGACTTGCTGCAAAAAATAATGGTTTTCAAGGACTCTG- 1264
.|.|||||.|..||..||.|| ||||.|| ||.|| ||| |||
RBAM_027300__ 1216 ACCGGATATAATGATATGATG-AAAAGAT-----TTCTC---GAC-CTGA 1255
BSNT_04426___ 1265 ----GT---GTT--ATTAAAATAAAAAGCAAACATGAGACGCAGCCATTA 1305
|| |.| |||.|.|||||..||||| |||.| ||
RBAM_027300__ 1256 AAACGTCAGGATCCATTGATATAAACGGCAAA------ACGGA-----TA 1294
BSNT_04426___ 1306 AAA-----------TATAAAGGATT-AAGAGAAGAGTTTCTTGTATCCTA 1343
||| |||||.||.|| |||| |.||.||.|||.|.||.||
RBAM_027300__ 1295 AAATACCGCTGGCGTATAAGGGCTTGAAGA-ACGACTTCCTTCTGTCATA 1343
BSNT_04426___ 1344 CACGTTTACAAGCGG-GGGCATGCCCGCTGTCATTGTGGATGACAGCC-- 1390
.||.||||||||||| |||| ||||..|.||.||.|| ||.||
RBAM_027300__ 1344 TACATTTACAAGCGGAGGGC-TGCCGACCGTTATCGT------CACCCAG 1386
BSNT_04426___ 1391 ----TGTTTAAACAGCTGGACAAGGATAAGGACCCCCGCATTCAGCTGGC 1436
|.|||.|.|.|.|.||.||.||||..|||||...|||||| ||.
RBAM_027300__ 1387 CAGGTATTTGACCGGATCGAAAAAGATATCGACCCGTCCATTCA---GGG 1433
BSNT_04426___ 1437 GCAATCTACA----TTTATCGGCGTCAATGTGAAACATGACGATCAAATG 1482
..|||| |.| |||.|||||.|.|...|.||||.|||.||..|.||.
RBAM_027300__ 1434 AAAATC-AAATCGGTTTTTCGGCATTACACTCAAACGTGAAGAGGACATC 1482
BSNT_04426___ 1483 GAAAAAGCAAATGAGCTTTTTCAACAGGTGAACAA--------GAAAAAC 1524
.|||||||..|||..||.||||||..|..|.||.| | |
RBAM_027300__ 1483 CAAAAAGCTGATGGTCTGTTTCAAGCGCAGCACTATTCTGACGG-----C 1527
BSNT_04426___ 1525 GAGCATTTATCAAGACTGGATACAAGCGCTG---CGCA----AAAATCAC 1567
|.|| |.|||..|.|.|| ||..|||| |.|| ||||.||
RBAM_027300__ 1528 GCGC---TTTCACAATTTGA---AACGGCTGACACCCAAAAGAAAAACA- 1570
BSNT_04426___ 1568 TGTTTGGTATGGTGATGTTCATCGTCGGCTTCTTAGGGTTAACGTTCCTG 1617
|.||..||.|.|||||.||.||||||||.||.||||||||.||.|||
RBAM_027300__ 1571 ---TGGGGCTGATCATGTTTATTGTCGGCTTTTTGGGGTTAACCTTTCTG 1617
BSNT_04426___ 1618 ATTACATCAGGTTGTATCCTTTATTTTAAACAAATGGGTGAAAGTGAAGA 1667
||.||.|||||.||||||||||||||||||||||||||.||..||||.||
RBAM_027300__ 1618 ATCACCTCAGGCTGTATCCTTTATTTTAAACAAATGGGCGAGTGTGAGGA 1667
BSNT_04426___ 1668 TGA-AAAACCGAGCTATACGATTTTAAGAAAACTCGGTTTTACGCAGGGC 1716
||| ||..|.|| .||.|||||.||..|.||.|||||.||.||...|||.
RBAM_027300__ 1668 TGAGAAGGCTGA-TTACACGATATTGCGGAAGCTCGGCTTCACAACGGGA 1716
BSNT_04426___ 1717 GACCTGATAAAGGGGATACGCATCAAACAAATGTACAACTTCGGCATTCC 1766
||.|||.|.||.||.||.|||...||.||...|||..|.||||||||.||
RBAM_027300__ 1717 GATCTGCTGAAAGGCATCCGCCGGAAGCAGGCGTATCATTTCGGCATCCC 1766
BSNT_04426___ 1767 GCTCGTTGTCGGCCTCTTCCACAGTTACTTTGCCGTCCAATCCGGCTGGT 1816
|||||||.||||.||.||||||||.||.||||||||.||.||.||.||||
RBAM_027300__ 1767 GCTCGTTCTCGGGCTGTTCCACAGCTATTTTGCCGTTCAGTCAGGATGGT 1816
BSNT_04426___ 1817 TCTTATTCGGATCAGAGGTATGGGCGCCCATGATTATGGTGATGGTGTTA 1866
|.|||||||||.|.||.||.|||.||||.|||||.||.||.||||.|.|.
RBAM_027300__ 1817 TTTTATTCGGAACGGAAGTGTGGACGCCGATGATCATCGTCATGGCGCTG 1866
BSNT_04426___ 1867 TATACTGC-GCTCTACTCCATTTTTGGTTTTCTGTCAGTTCTTTATTATA 1915
||||| || |||.||||||||.||.||..|.|||||.||.||.||.||||
RBAM_027300__ 1867 TATAC-GCTGCTGTACTCCATCTTCGGCATGCTGTCGGTGCTATACTATA 1915
BSNT_04426___ 1916 AGAAGGTCATTAAATCGTCGTTGTGA 1941
|.|||||||||.||||..|.||||.|
RBAM_027300__ 1916 AAAAGGTCATTCAATCCGCCTTGTAA 1941
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