Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04422 and RBAM_027280
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:53
# Commandline: needle
# -asequence dna-align/BSNT_04422___yttB.1.9828.seq
# -bsequence dna-align/RBAM_027280___yttB.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04422___yttB-RBAM_027280___yttB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04422___yttB-RBAM_027280___yttB.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04422___yttB
# 2: RBAM_027280___yttB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1209
# Identity: 912/1209 (75.4%)
# Similarity: 912/1209 (75.4%)
# Gaps: 39/1209 ( 3.2%)
# Score: 3372.0
#
#
#=======================================
BSNT_04422___ 1 ATGCCGCGTGCTCTTAAAATTTTAGTCATTGGAATGTTTATCAATGTGAC 50
||||||||.|||.|.||.||.|||.||||.||||||||||||||||||||
RBAM_027280__ 1 ATGCCGCGCGCTTTGAAGATATTAATCATCGGAATGTTTATCAATGTGAC 50
BSNT_04422___ 51 GGGTGCTTCTTTTTTATGGCCGCTGAATACGATTTATATCCATAATCATT 100
|||.||.||||||||.|||||||||||||||||.|||||.||||||||||
RBAM_027280__ 51 GGGCGCATCTTTTTTGTGGCCGCTGAATACGATCTATATTCATAATCATT 100
BSNT_04422___ 101 TAGGAAAGTCGTTAACAATAGCCGGACTTGTCCTGATGCTGAATTCCGGC 150
||||.||.|||.|.||..|.||.||..|.||.|||||||||||||||||.
RBAM_027280__ 101 TAGGGAAATCGCTGACTGTTGCGGGGATAGTTCTGATGCTGAATTCCGGT 150
BSNT_04422___ 151 GCCAGTGTGGCTGGTAATTTATGCGGAGGTTTTTTGTTTGATAAAATCGG 200
|||||||||||.||.|||||||||||.||.||||||||||||||||||||
RBAM_027280__ 151 GCCAGTGTGGCGGGGAATTTATGCGGCGGATTTTTGTTTGATAAAATCGG 200
BSNT_04422___ 201 CGGTTTTAAATCGATTATGCTTGGGATAGCCATTACGTTAGCAAGCCTGA 250
|||.||.|||||.||||||||.||.||....||.||.||.|||||.||..
RBAM_027280__ 201 CGGATTCAAATCCATTATGCTGGGCATTATGATCACATTGGCAAGTCTTC 250
BSNT_04422___ 251 TGGGCCTTGTCTTTTTTCATGATTGGCCAGCCTATATTGTGCTGCTGACG 300
|.||.||.||..|.||||||.|.|||||.|..||||||..||||||.|..
RBAM_027280__ 251 TCGGACTCGTTCTGTTTCATCAATGGCCCGTTTATATTTGGCTGCTCATC 300
BSNT_04422___ 301 ATTGTGGGCTTTGGCTCCGGTGTTGTTTTTCCGGCCAGCTACGCAATGGC 350
|||||.|||||.||.||||||.|.||.|||||||||||||||||.|||||
RBAM_027280__ 301 ATTGTCGGCTTCGGTTCCGGTATCGTGTTTCCGGCCAGCTACGCCATGGC 350
BSNT_04422___ 351 GGGATCGGTATGGCCTGAAGGGGGAAGGAAGGCATTTAATGCGATATATG 400
||||.||||||||...|||||.||..|||..||.|||||||||||.||||
RBAM_027280__ 351 GGGAGCGGTATGGAAAGAAGGCGGGCGGAGAGCTTTTAATGCGATCTATG 400
BSNT_04422___ 401 TCGCGCAAAACGCGGGTGTGGCTGTCGGTTCAGCGCTTGGCGGTGTCGTG 450
|.||.||.|||||.|||||.||.||.||.||.||.||.|||||..|.||.
RBAM_027280__ 401 TAGCTCAGAACGCAGGTGTCGCCGTGGGCTCTGCACTCGGCGGGATGGTT 450
BSNT_04422___ 451 GCGTCTTTCTCGTTTTCATATGTATTTTTGGCGAATGCCGCGCTGTATCT 500
|||.|.|.|||||||.|.||.||.|||||.||.|||||...|||||||.|
RBAM_027280__ 451 GCGGCGTACTCGTTTACGTACGTGTTTTTAGCCAATGCTATGCTGTATGT 500
BSNT_04422___ 501 GGTCTTTTTCTTTATTGTATATTTCGGATTTCGAAATATTCAGACGGGAG 550
|.|.||||||.||||.||||.||||||.|||||||||||..|.||...|.
RBAM_027280__ 501 GCTGTTTTTCCTTATCGTATTTTTCGGGTTTCGAAATATCAAAACCCAAA 550
BSNT_04422___ 551 ATGCGTCCCAACCA----TCCGTGCTTGATTACGATGCTGTGAACAGCAA 596
||||| |.||| ||.||.||.||.|||||..||||.|.|||||.
RBAM_027280__ 551 ATGCG----AGCCAGGTTTCTGTTCTGGACTACGAGCCTGTCAGCAGCAG 596
BSNT_04422___ 597 AGCAAAATTTGCCGCACTGATCATTTTAAGCGGAGGCTATGTACTCGGAT 646
|.|.||||||.|.||.||..||||.||.|||||.||.|||||.|||||.|
RBAM_027280__ 597 AACGAAATTTACGGCGCTTCTCATATTGAGCGGCGGGTATGTTCTCGGGT 646
BSNT_04422___ 647 GGCTGGCTTATTCTCAGTGGTCAACCACAATTGCTTCGTACACACAAAGC 696
||.|.||.|||||.||||||||.||.||..||||.||..|.||.||||||
RBAM_027280__ 647 GGATTGCCTATTCGCAGTGGTCCACAACCGTTGCGTCACATACTCAAAGC 696
BSNT_04422___ 697 ATTGGAATATCTCTTTCCTTATACAGCGTGCTGTGGACGGTTAACGGAAT 746
||.||.||..|.|||||.||||||||.|||||.|||||.||.||||||||
RBAM_027280__ 697 ATCGGTATGCCGCTTTCATTATACAGTGTGCTCTGGACCGTAAACGGAAT 746
BSNT_04422___ 747 TCTCATTGT-GCTCGGCCAGCCGCTCGTCAGTTTTGTGGTGAAAAAATGG 795
..|.||||| || |||.|||||.|||.|..|...|||..|||||||||||
RBAM_027280__ 747 ATTAATTGTCGC-CGGACAGCCTCTCATGGGAGCTGTTCTGAAAAAATGG 795
BSNT_04422___ 796 GCCGAGT-CGCTAAAAGCGCAAATGGTCATCGGCTTTATCATTTTTATTG 844
.||| || ||.|||||.||||.|||||||||||||||...||||||||.|
RBAM_027280__ 796 TCCG-GTGCGTTAAAAACGCAGATGGTCATCGGCTTTTGTATTTTTATCG 844
BSNT_04422___ 845 TGTCTTTCAGCATGCTGCTGACTGCAAAGCAATTTCCGATGTTTCTCGCA 894
|.||.|||.||.||||.||.|..||.||||||||||||||||..|||.|.
RBAM_027280__ 845 TCTCGTTCGGCGTGCTTCTCAGCGCCAAGCAATTTCCGATGTACCTCACC 894
BSNT_04422___ 895 GCGATGGTGATCCTGACGATCGGAGAAATGCTTGTTTGGCCTGCTGTGCC 944
||.||||||||..|.||..||||||||||||||||.||||||||.|||||
RBAM_027280__ 895 GCAATGGTGATTTTAACCGTCGGAGAAATGCTTGTCTGGCCTGCCGTGCC 944
BSNT_04422___ 945 GACAATTGCCAATCAGCTTGCCCCTAAAGGGAAAGAAGGCTTTTATCAAG 994
.||.|||||||||||||||||.|||||.|||||||||||.|||||.||||
RBAM_027280__ 945 TACCATTGCCAATCAGCTTGCGCCTAAGGGGAAAGAAGGATTTTACCAAG 994
BSNT_04422___ 995 GCTTTGTCAACAGTGCGGCGACAGGCGGAAGAATGATTGGTCCCCTGTTC 1044
|.||.|||||||||||||||||.|||||.||||||||.||.||.||..|.
RBAM_027280__ 995 GATTCGTCAACAGTGCGGCGACGGGCGGCAGAATGATCGGGCCGCTCCTT 1044
BSNT_04422___ 1045 GGAGGAGTGCTTGTCGATCATTACGGCATTAAGGCCCT--TGTTTTATCT 1092
||.||.|||||.||.|||||.|||||.||.|..|..|| || ||.|||
RBAM_027280__ 1045 GGCGGCGTGCTGGTTGATCAGTACGGAATGAGCGTGCTGCTG-TTGATC- 1092
BSNT_04422___ 1093 CTGTTGGT-ATTGCTGCTGATCAGTATTGCCACAACGCTTCTATATGACA 1141
|||.|||| .||..||.|| ||||.||.||..|.|||.|.||.||.||||
RBAM_027280__ 1093 CTGATGGTGCTTCTTGTTG-TCAGCATCGCAGCGACGGTGCTGTACGACA 1141
BSNT_04422___ 1142 AACGGCTAAAATCAGTTAAAGAAACAAA-----TAAGCAGGC-ATCAATC 1185
||||..|.|||.|.||| ||.||||||| .||| .|| ||.|
RBAM_027280__ 1142 AACGCTTGAAAACCGTT-AATAAACAAAACGTCCAAG--TGCGATGA--- 1185
BSNT_04422___ 1186 TCTTCATAA 1194
RBAM_027280__ 1185 --------- 1185
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