Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

Home

About

Browser

Genes

Download

Publications

DNA alignment: BSNT_04421 and RBAM_027270

See Amino acid alignment / Visit BSNT_04421 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:26:53
# Commandline: needle
#    -asequence dna-align/BSNT_04421___ytvA.1.9828.seq
#    -bsequence dna-align/RBAM_027270___ytvA.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04421___ytvA-RBAM_027270___ytvA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04421___ytvA-RBAM_027270___ytvA.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04421___ytvA
# 2: RBAM_027270___ytvA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 802
# Identity:     572/802 (71.3%)
# Similarity:   572/802 (71.3%)
# Gaps:          32/802 ( 4.0%)
# Score: 1938.0
# 
#
#=======================================

BSNT_04421___      1 ATGGCT-AGTTTTCAATCAT---TTGGGATACCAGGA-CAGCTGGAAGTC     45
                     |||||| |   .||||  ||   ||.|||.|.|.||| ||||||||..|.
RBAM_027270__      1 ATGGCTGA---CTCAA--ATGTATTCGGAAAACTGGAGCAGCTGGAGCTT     45

BSNT_04421___     46 ATCAAAAAAGCGCTTGATCACGTGCGAGTCGGTGTGGTAATTACAGATCC     95
                     ||||||||.|||||||||||||..||..||||.|||||.||||||||.||
RBAM_027270__     46 ATCAAAAAGGCGCTTGATCACGCACGCATCGGCGTGGTGATTACAGACCC     95

BSNT_04421___     96 CGCACTTGAAGATAATCCTAT--TGTCTACGTAAATCAAGGCTTTGTTCA    143
                     |.|.|||||.||.|||||.||  |.|.|||  ||||||.||.|||.|..|
RBAM_027270__     96 CTCTCTTGAGGACAATCCCATCATATATAC--AAATCAGGGATTTATGGA    143

BSNT_04421___    144 AATGACCGGCTACGAAACCGAGGAAATTTTAGGAAAGAACTGCCGCTTCT    193
                     .|||||.||||||....||||.||.||.|||||.|||||||||.|.||..
RBAM_027270__    144 TATGACAGGCTACTCTTCCGAAGAGATATTAGGTAAGAACTGCAGATTTC    193

BSNT_04421___    194 TACAGGGGAAACACACAGATCCTGCAGAAGTGGACAACATCAG-AACCGC    242
                     |.||..|.|||.|.||.||.|.|..|.||||.|..||.||||| ||..||
RBAM_027270__    194 TGCAAAGCAAAGAAACCGACCGTCAACAAGTCGCGAAAATCAGAAAGAGC    243

BSNT_04421___    243 TTTAC----AAAATAAAGAACCGGTCACCGTTCAGATTCAAAACTACAAA    288
                     ||.||    |||..|||||     ||||.||.|.|.|..|||||..||||
RBAM_027270__    244 TTAACCCAGAAAGAAAAGA-----TCACGGTGCGGCTGAAAAACGTCAAA    288

BSNT_04421___    289 AAAGACGGAACGATGTTCTGGAATGAATTAAATATTGATCC----AATGG    334
                     ||||||||.||....||.|||||||||.|.||.||||||||    .||| 
RBAM_027270__    289 AAAGACGGCACCCCATTTTGGAATGAACTCAACATTGATCCTCTTTATG-    337

BSNT_04421___    335 AAATAGAGGATAAAACGTATTTTGTCGGAATTCAGAAAGATATCACCAAG    384
                        |.||.||.||....|||||||||||..||||.|||||.||.||..||
RBAM_027270__    338 ---TTGAAGACAAGCTCTATTTTGTCGGTTTTCAAAAAGACATTACAGAG    384

BSNT_04421___    385 CAAAAAGAGTATGAAAAGCTTCTCGAGGATTCCCTCACGGAAATTACTGC    434
                     ||.|||||.||.||||||||.||.||||||||||||||.|||||.||..|
RBAM_027270__    385 CAGAAAGAATACGAAAAGCTCCTTGAGGATTCCCTCACAGAAATCACGAC    434

BSNT_04421___    435 ACTTTCAACTCCTATTGTCCCGATTCGCAATGGCATTTCGGCTCTTCCGC    484
                     .||.||.||.||.|||||.|||||.||.||.|||||.||.|||.|.|||.
RBAM_027270__    435 GCTGTCTACACCGATTGTTCCGATCCGAAACGGCATCTCCGCTTTGCCGT    484

BSNT_04421___    485 TAGTCGGAAACCTGACAGAGGAGCGATTTAATTCCATTGTTTGCACATTG    534
                     ||||.||||||.|.||.||.||.||||||.||||.|||||....||.|||
RBAM_027270__    485 TAGTGGGAAACTTAACGGAAGAACGATTTGATTCAATTGTGACAACTTTG    534

BSNT_04421___    535 ACGAATATCTTATCAACATCCAAAGATGATTATTTGATCATTGATTTATC    584
                     |||.|.||.|||.|..||||.|||||||||||.||.||.||.||.|||||
RBAM_027270__    535 ACGGACATATTAACCGCATCTAAAGATGATTACTTAATTATAGACTTATC    584

BSNT_04421___    585 CGGATTGGCCCAAGTGAACGAACAAACGGCCGACCAAATTTTCAAGCTGA    634
                     .||..|||||.|.||.||||||||.||.||.||||..||||||||..||.
RBAM_027270__    585 AGGTCTGGCCGAGGTAAACGAACAGACCGCAGACCGGATTTTCAAATTGC    634

BSNT_04421___    635 GCCATTTGCTGAAATTGACCGGAACTGAGTTAATCATTACCGGCATTAAG    684
                     .|||..||||.|||||.|.|||.||.||.||.||.||.|||||.||.|||
RBAM_027270__    635 ACCACCTGCTTAAATTAATCGGCACGGAATTGATTATCACCGGTATCAAG    684

BSNT_04421___    685 CCTGAATTGGCCATGAAAATGAATAAATTGGATGCCAATTTTTCATCGCT    734
                     |||....|.|||||||.|||||||.|..|.|||||||..|||||.||..|
RBAM_027270__    685 CCTACCCTCGCCATGAGAATGAATCAGCTTGATGCCAGCTTTTCTTCATT    734

BSNT_04421___    735 GAAAACATTTTTAAATGTAAAGGATGCCGTTAACGTGCTTCCGATTATGT    784
                     .||.||.|.||||||.||.|||||.|||||.||||||||||||.|..|.|
RBAM_027270__    735 AAAGACGTATTTAAACGTTAAGGACGCCGTCAACGTGCTTCCGGTCGTAT    784

BSNT_04421___    785 AA    786
                     ||
RBAM_027270__    785 AA    786


#---------------------------------------
#---------------------------------------

Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.