Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04412 and RBAM_027220
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:53
# Commandline: needle
# -asequence dna-align/BSNT_04412___melA.1.9828.seq
# -bsequence dna-align/RBAM_027220___melA.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04412___melA-RBAM_027220___melA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04412___melA-RBAM_027220___melA.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04412___melA
# 2: RBAM_027220___melA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1303
# Identity: 991/1303 (76.1%)
# Similarity: 991/1303 (76.1%)
# Gaps: 8/1303 ( 0.6%)
# Score: 3678.0
#
#
#=======================================
BSNT_04412___ 1 ATGAAAAAGATTACATTTATCGGTGCAGGGAGCACGATTTTCGCCAAAAA 50
.||||.||.||||||||||||||.||.||.||||||||||||||.|||||
RBAM_027220__ 1 TTGAAGAAAATTACATTTATCGGAGCGGGAAGCACGATTTTCGCAAAAAA 50
BSNT_04412___ 51 TGTTTTGGGAGACTGCCTGTTAACAGAAGCACTGAATGGATTTGAGTTCG 100
|||.|||||.||||||.|..|.||.||||||.|.||.||.|||||.||||
RBAM_027220__ 51 TGTATTGGGGGACTGCTTACTGACTGAAGCATTAAACGGGTTTGAATTCG 100
BSNT_04412___ 101 CTCTTTACGACATTGATCCCAAACGCCTGCAGGAATCCCAGCTCATGCTC 150
|.|||||.||.|||||..|...|||.|||.|.|||||||||||||||||.
RBAM_027220__ 101 CGCTTTATGATATTGACGCTGTACGGCTGAAAGAATCCCAGCTCATGCTG 150
BSNT_04412___ 151 GAAAATCTAAGAGACCGTTATAACCCAAGTGTGGCCATCAACAGCTATGA 200
|||||..|.||||||||.||.||..|.|||.|..||||||.|..|||.||
RBAM_027220__ 151 GAAAACATGAGAGACCGCTACAATACGAGTATATCCATCATCTCCTACGA 200
BSNT_04412___ 201 TGACAGAAAACTCGCCTTGCAAAACGCAGGCTATGTCATCAATGCGATTC 250
||||.||||||..||..||.||.||||.||||||||.||.||.||.||||
RBAM_027220__ 201 TGACCGAAAACAGGCGCTGAAACACGCCGGCTATGTGATAAACGCCATTC 250
BSNT_04412___ 251 AGGTTGGAGGATACAAACCGAGC-ACAGTCATCGATTTCGAGATTCCTAA 299
||||.|||||.||.||||| .|| ||.|||||.||.||.||.||.||.||
RBAM_027220__ 251 AGGTCGGAGGCTATAAACC-CGCGACGGTCATTGACTTTGACATCCCGAA 299
BSNT_04412___ 300 ACGGTATGGGCTGCGCCAGACGATCGCCGATACAGTCGGCATCGGCGGGA 349
.|||||.||.||.|||||||||||.||||||||.|||||.||.|||||.|
RBAM_027220__ 300 GCGGTACGGTCTCCGCCAGACGATTGCCGATACCGTCGGAATAGGCGGCA 349
BSNT_04412___ 350 TATTCAGATCTCTCAGAACAATCCCGGTCTTATTTGATATCGCAAAAGAT 399
|.|||.|.||.||..|.||.|||||.||.||||||||||||||||||||.
RBAM_027220__ 350 TTTTCCGTTCCCTTCGCACCATCCCCGTTTTATTTGATATCGCAAAAGAC 399
BSNT_04412___ 400 ATGGAGGAAATGTGCCCTGACGCATGGTTCTTAAACTATACAAATCCAAT 449
|||||.||..|.|||||.||.||.|||.|.|||||||||||||||||.||
RBAM_027220__ 400 ATGGAAGAGGTCTGCCCGGATGCGTGGCTGTTAAACTATACAAATCCGAT 449
BSNT_04412___ 450 GGCCACTCTTACAGGCGCCATGCTCCGCTATACCAATATCAAAACAATCG 499
||||.||||.||.||.||.||||||.|..||||.|||.|||||||..|||
RBAM_027220__ 450 GGCCTCTCTGACCGGAGCGATGCTCAGACATACAAATGTCAAAACGGTCG 499
BSNT_04412___ 500 GGCTCTGCCACAGTGTTCAAGTGTGCACGAAGGATTTATTTAAAGCTCTC 549
|.||.||||||||.||.||.||.||.||.||.|||.|.|||.|..|.|||
RBAM_027220__ 500 GCCTGTGCCACAGCGTCCAGGTATGTACCAAAGATCTGTTTGACTCACTC 549
BSNT_04412___ 550 GGAATGGAGCATGACGGAATTGAGGAACGCATCGCGGGAATCAATCATAT 599
||.|||||.||.||.||.|..||.||||||||.||.||.||.||.|||||
RBAM_027220__ 550 GGCATGGATCACGAAGGTACGGAAGAACGCATTGCCGGCATTAACCATAT 599
BSNT_04412___ 600 GGCTTGGCTTTTGGAAGTCAAAAAAGACGGCACAGATTTATATCCAGAAA 649
|||||||||||||||..|.|||||||||||.|..|||||||||||.||||
RBAM_027220__ 600 GGCTTGGCTTTTGGAGATTAAAAAAGACGGAATTGATTTATATCCTGAAA 649
BSNT_04412___ 650 TCAAAAGGAGAGCGAAAGAAAAACAAAAAACAAAGCATCATGATATGGTG 699
|.|||||..|.||....|||||||||||.||.||.|||.|.||.||||||
RBAM_027220__ 650 TTAAAAGACGGGCACGCGAAAAACAAAAGACGAAACATAAGGACATGGTG 699
BSNT_04412___ 700 CGGTTTGAATTAATGGATAAGTTCGGCTATTATGTCACGGAATCGTCCGA 749
||||||||..|.||||||||.|||||||..||.||.||||||||.||.||
RBAM_027220__ 700 CGGTTTGAGCTGATGGATAAATTCGGCTGCTACGTAACGGAATCATCTGA 749
BSNT_04412___ 750 ACATAACGCAGAGTATCACCCATACTTTATTAAACGAAATTACCCTGAAC 799
.|||||.||.||.||||||||.||.|||||.|||.|....||.|||||.|
RBAM_027220__ 750 GCATAATGCCGAATATCACCCGTATTTTATAAAAAGCCGGTATCCTGAGC 799
BSNT_04412___ 800 TGATCAG-CGAGCTGCAAATCCCGCTCGACGAATATCCGAGAAGGTGCGT 848
|||| || .||.||.|||||.|||||.||.|||||||||||.||.||||.
RBAM_027220__ 800 TGAT-AGATGAACTCCAAATTCCGCTTGATGAATATCCGAGGAGATGCGC 848
BSNT_04412___ 849 CAAGCAGATTGAAAATTGGGAGAAAATGCGGGATGATATCGTCAACAATA 898
..|.||.||..|.||||||||.|..|||.|.||.|..|||.|||||||..
RBAM_027220__ 849 GGAACAAATCAACAATTGGGAAACGATGAGAGACGGCATCATCAACAACC 898
BSNT_04412___ 899 AAAACCTTACGCACGAACGCTCAAAAGAATATGGTTCAAGAATTATAGAA 948
|||||||.|||||..||||||||||||||||.|||||.||||||||.|||
RBAM_027220__ 899 AAAACCTGACGCATAAACGCTCAAAAGAATACGGTTCGAGAATTATTGAA 948
BSNT_04412___ 949 GCAATGGAAACAAACGAACCATTCACCTTCGGAGGAAACGTCTTGAATAC 998
||.|||||.||...|.||||.|||||.|||||.||.||.||..|||||||
RBAM_027220__ 949 GCGATGGAGACGGGCAAACCGTTCACATTCGGCGGCAATGTGCTGAATAC 998
BSNT_04412___ 999 AGGGCTGATCGCCAACCTTCCTTCAAAAGCGGTTGTGGAAGTGACATGCG 1048
.||||||||..|.||.||.||..|.||||||||.||.||||||.|.|||.
RBAM_027220__ 999 CGGGCTGATACCGAATCTGCCGGCGAAAGCGGTCGTTGAAGTGCCTTGCA 1048
BSNT_04412___ 1049 TCGCCGACAGAAAAAAAATTACACCGTGC--TTCGCCGGAGAACTGCCTG 1096
..||||.||.|||..|.||||..|||||| |||| ||.|||||.||.|
RBAM_027220__ 1049 CAGCCGTCAAAAACCACATTATGCCGTGCTATTCG--GGCGAACTTCCCG 1096
BSNT_04412___ 1097 AGCAGCTTGCCGCCTTAAACCGGACGAATATTAATACACAGCTGATGACA 1146
|||||||.||.||..|.|||.|.||.||.|||||.||||||||..|.||.
RBAM_027220__ 1097 AGCAGCTCGCGGCGCTCAACAGAACAAACATTAACACACAGCTTTTAACC 1146
BSNT_04412___ 1147 ATCGAAGCGGCTGTCACACGGAAAAAAGAAGCGGTTTACCAAGCTGCAAT 1196
|||||||||||.||.|||...|||||.|||||.||.||.||.||.||.||
RBAM_027220__ 1147 ATCGAAGCGGCCGTTACATTAAAAAAGGAAGCTGTATATCAGGCGGCCAT 1196
BSNT_04412___ 1197 GCTTGATCCGCATACAAGCGCGGAGCTTTCCATGAAGGACATCATCTCCA 1246
|||||||||||||||.|||||.||||||||||||||.||||||||.||..
RBAM_027220__ 1197 GCTTGATCCGCATACGAGCGCCGAGCTTTCCATGAATGACATCATATCTT 1246
BSNT_04412___ 1247 TGTGTGACGATTTATTTGCAGCACACGGCGATTGGCTTCCGGAATACAAA 1296
||||.||.||.|||||||.|||.|||...||..|||||||||..||..|.
RBAM_027220__ 1247 TGTGCGATGACTTATTTGAAGCGCACAAAGACCGGCTTCCGGCTTATCAC 1296
BSNT_04412___ 1297 TAA 1299
|.|
RBAM_027220__ 1297 TGA 1299
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