Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04406 and RBAM_027180
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:52
# Commandline: needle
# -asequence dna-align/BSNT_04406___msmR.1.9828.seq
# -bsequence dna-align/RBAM_027180___msmR.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04406___msmR-RBAM_027180___msmR.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04406___msmR-RBAM_027180___msmR.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04406___msmR
# 2: RBAM_027180___msmR
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1084
# Identity: 745/1084 (68.7%)
# Similarity: 745/1084 (68.7%)
# Gaps: 107/1084 ( 9.9%)
# Score: 2432.5
#
#
#=======================================
BSNT_04406___ 1 ATGGTTCGTATTAAAGATATCGCCTTGAAAG----CTAAAGTTTCCAGCG 46
|||||.|||.|.||||||||.||||| |.|| || ||.|||||||
RBAM_027180__ 1 ATGGTCCGTCTCAAAGATATTGCCTT-ACAGGCATCT---GTATCCAGCG 46
BSNT_04406___ 47 CAACTGTGTCCAGAATTTTAAATGAAGATGAGTCGCTTT--CTGTTGCGG 94
|.||.||.||.||||||||.|||.|.||||| |.|||| ||||..|.|
RBAM_027180__ 47 CGACAGTATCGAGAATTTTGAATAAGGATGA--CTCTTTGGCTGTGACTG 94
BSNT_04406___ 95 GCGAAACGAGACAAAGAGTCATCAACATCGCTGAAGAGCTTGGTTATCAA 144
..|||||.|||.|||.|||..|.|..|||||.||.|||||.||.|||| |
RBAM_027180__ 95 ATGAAACAAGAGAAAAAGTTCTGAGGATCGCCGATGAGCTGGGCTATC-A 143
BSNT_04406___ 145 ACCGTTGCCAAACGCCGAAAATCCCGCGGGCAAAAACAGCGGGCTCA--- 191
.||||.|.|||| ||.| ||| ||.|||.||.|.|.||
RBAM_027180__ 144 GCCGTCGGCAAA-----AAGA-----CGG--AAGAACCGCAGCCGCAGCG 181
BSNT_04406___ 192 -------GCCGCTGATCGGTGTGCTGAGCTGTCTGTCCCCTGATCAG--G 232
|||.||||||||.||..|.|||||.|||||.||.|| || |
RBAM_027180__ 182 ATTCAGCGCCCCTGATCGGCGTTGTCAGCTGCCTGTCACCGGA--AGTAG 229
BSNT_04406___ 233 AAAGGCAGGACCCTTATTTTTCTTCCATTCGGAAAGGGATTGAAAAGGAA 282
||.|||||||.|||||||||||..|.||.||.|||||.|||||..|.|||
RBAM_027180__ 230 AACGGCAGGATCCTTATTTTTCGGCGATCCGAAAAGGCATTGAGGAAGAA 279
BSNT_04406___ 283 TGCTTTGAACAGGAAATTTTCATTACAAATTCGATTCATCTCGGCTCCTT 332
||||||..|||..||.||||.||.|||..|||.||.||||||||.||.||
RBAM_027180__ 280 TGCTTTCGACAAAAAGTTTTTATCACATCTTCTATCCATCTCGGTTCTTT 329
BSNT_04406___ 333 TCAGGAACATATCTTTCGGGAATTGGATGGTGTCATTGTCATCGGCCGTG 382
|||.||.|||||.||||..|||.||||.||.|||||.|||||||||.|..
RBAM_027180__ 330 TCAAGAGCATATGTTTCACGAACTGGACGGCGTCATCGTCATCGGCAGCC 379
BSNT_04406___ 383 TTCATGATGAAGCGGTTAAGCATATAAGCGGAAGGCTT---GAGCATGCC 429
|.||.||.||.|||.|||.|.||||.|||| ..|||| | |||.||.
RBAM_027180__ 380 TGCAAGACGAGGCGCTTACGAATATCAGCG--CCGCTTTCAG-GCACGCG 426
BSNT_04406___ 430 GTATTTATCAA--TCATTCACCAGAT-CCGAAAGCATACGATTCGATTGG 476
||||||.|.|| .|| |.||.||| |||...|| ||||||||..|..|
RBAM_027180__ 427 GTATTTGTTAACGGCA--CCCCCGATCCCGCCCGC-TACGATTCCGTCAG 473
BSNT_04406___ 477 AATCGATTTTAAATCGGCTTCA-CGCCAA--GCGATTGATCACCTTTTTG 523
..|.|||||| |..||..|| |||.|| |||||.||.||.|||
RBAM_027180__ 474 CGTGGATTTT---TATGCCGCAGCGCAAAAGGCGATAGAACATCTT---- 516
BSNT_04406___ 524 ACT-----TAGGCTACAAACGGTTAGGCTACATTGGCGGACAAGAAAAGG 568
|| |.||.|||.|.|||.|.||.||.||.|||||.|..||...||
RBAM_027180__ 517 -CTGTCGCTCGGTTACCAGCGGCTCGGTTATATCGGCGGCCGGGAGCGGG 565
BSNT_04406___ 569 AGCATACGCTGAAGGACGGCCAAAGCATTCGC---AGAACGATTGAAGAC 615
|||||||..|.|..|||||...||.|| || |.|||||||||.||.
RBAM_027180__ 566 AGCATACCGTCATAGACGGTGTAAACA---GCAATAAAACGATTGAGGAT 612
BSNT_04406___ 616 AAACGCCTGACCGCTTTTTTGGAGTCA----GCCGCCCCCCAGCCTGAGC 661
||.||.|||||||||||.|| .|| ||||.|.||.||||.||||
RBAM_027180__ 613 AAGCGTCTGACCGCTTTCTT----ACAAATGGCCGGCGCCGAGCCGGAGC 658
BSNT_04406___ 662 ATGTGCTGATCGGAGAATACAGCATGCGTGAGGGCTATCGCCTGATGAAG 711
||||.||||||||.|||||||||||||..||.||.|..||.||||||||.
RBAM_027180__ 659 ATGTACTGATCGGCGAATACAGCATGCACGAAGGGTTCCGGCTGATGAAT 708
BSNT_04406___ 712 AAAGCAATTGATCAA----GGCCATCTGCCGGAAGCATTCTTTATTGCCA 757
.|||| .||||| ||...|||.||.||.||.||.|||||.||.|
RBAM_027180__ 709 GAAGC----CATCAAAGGCGGAAGTCTCCCCGATGCCTTTTTTATCGCAA 754
BSNT_04406___ 758 GCGATTCTATGGCGATCGGCGCATTAAAAGCGCTGCAGGAAGCCGGACTG 807
|.|||||.|||||..||||||||||||||||..|||||||||||||.||.
RBAM_027180__ 755 GTGATTCGATGGCTGTCGGCGCATTAAAAGCCTTGCAGGAAGCCGGCCTT 804
BSNT_04406___ 808 CAAGTGCCGCGGGATACTGCAATCGTCAGCTTTAACGGCATTGAGGAAGC 857
|||||.|||||.|||||.||..|.||||||||.|||||.|||||.||.||
RBAM_027180__ 805 CAAGTCCCGCGCGATACGGCGGTTGTCAGCTTCAACGGAATTGATGAGGC 854
BSNT_04406___ 858 TGAATTTGCCAGCACGCCTTTAACGACGGTGAAGGTATACACAGAGGAAA 907
.||||..|||||||||||.|||.|.|||||.||.||||||||.||.||.|
RBAM_027180__ 855 AGAATACGCCAGCACGCCGTTATCAACGGTAAAAGTATACACGGAAGAGA 904
BSNT_04406___ 908 TGGGCCGGACAGGCGTAAAACTGCTGCTTGACCGTCTCAATGGCCGTA-- 955
||||||||||.||.||.|||.||||.||.||||||.|.||.|||.|.|
RBAM_027180__ 905 TGGGCCGGACGGGTGTCAAATTGCTTCTCGACCGTTTAAACGGCAGAACC 954
BSNT_04406___ 956 ----CGCTTCCCCACCAAGTCACCCTGCCAACAAGATTAATCGTAAGACA 1001
||||..|| ||.||.||.||.||...|||.||.||.|||||
RBAM_027180__ 955 GTCCCGCTGGCC------GTGACGCTCCCCACTTCATTGATTGTCAGACA 998
BSNT_04406___ 1002 AAGCTGCGGATGTACAGCAAAGGAGGTGACATAA 1035
|||||||||.| .|||..|||||||||||
RBAM_027180__ 999 AAGCTGCGGCT-CACAAGAAAGGAGGTGA----- 1026
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