Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_04371 and RBAM_027100

See Amino acid alignment / Visit BSNT_04371 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:26:50
# Commandline: needle
#    -asequence dna-align/BSNT_04371___ythQ.1.9828.seq
#    -bsequence dna-align/RBAM_027100___ythQ.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04371___ythQ-RBAM_027100___ythQ.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04371___ythQ-RBAM_027100___ythQ.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04371___ythQ
# 2: RBAM_027100___ythQ
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1305
# Identity:     747/1305 (57.2%)
# Similarity:   747/1305 (57.2%)
# Gaps:         291/1305 (22.3%)
# Score: 1819.0
# 
#
#=======================================

BSNT_04371___      1 ATGAACGGGCGTACGCTCTTTTTTCGAAGGCTGTTTGACTATTACAAGTA     50
                     ||||.||||||..|..|.|||||||.||||||||||.|.||||....|||
RBAM_027100__      1 ATGACCGGGCGGGCTTTGTTTTTTCAAAGGCTGTTTCATTATTGGCGGTA     50

BSNT_04371___     51 TCAGTTTAAAGTGTTGCATGCGGTCATTGACTGGACAGTCGCTCTCTATA    100
                     |||.|..||.|||||.||..||||||||||.|||||.|||||.||.||||
RBAM_027100__     51 TCAATGGAAGGTGTTTCAGACGGTCATTGATTGGACGGTCGCGCTGTATA    100

BSNT_04371___    101 TTGTTTTGCCGGCGATTGCTTTTGTCATCTATCAGTATATTGATTTGATG    150
                     |.|||.|.||.||....||.||||.|.|.|||||.|||..|||.|.|.||
RBAM_027100__    101 TCGTTCTTCCCGCTGCCGCATTTGCCGTTTATCAATATGCTGAATGGCTG    150

BSNT_04371___    151 AATGGAAGAGGCCTTCTTTATGAGTGGTCTGAAGTGGC-GGAG-------    192
                     ||.||.||.||.||||||.|         ||.||.||| ||||       
RBAM_027100__    151 AACGGCAGGGGGCTTCTTAA---------TGGAGCGGCAGGAGTATTAGG    191

BSNT_04371___    193 -TGGAGATGGCTGTACGCTGTGT---GTGGGCTGATCATGTTTACAGGCT    238
                      |||.|.||||||||   |||.|   |||..|||.|..|||..||.||.|
RBAM_027100__    192 ATGGGGCTGGCTGTA---TGTATTCAGTGCCCTGCTGTTGTGCACGGGTT    238

BSNT_04371___    239 CGATTCGTACATTTTTAATGGAAGCGGACAAAGTGTTTTTGCTGCAAAAG    288
                     ..||||.|||.|||||..||||||||||..|.||.||||||.|||     
RBAM_027100__    239 TTATTCATACCTTTTTGCTGGAAGCGGATCACGTATTTTTGGTGC-----    283

BSNT_04371___    289 AAAG-AAATCATCT-AT-CAA---CTCAAACGGTACGCGCTTTTGTA---    329
                      |.| |||.||||| || |||   ||.||||||||||||||||||||   
RBAM_027100__    284 -ATGCAAAACATCTGATGCAAAAGCTGAAACGGTACGCGCTTTTGTATTC    332

BSNT_04371___    330 ----TTCTTTTCTCGTCACGATGGCTAAATGGCTGCTTCTCTT----TTT    371
                         |||.||||.|.|..|       ||||||  |.|.|.|||    |  
RBAM_027100__    333 GATGTTCCTTTCCCTTATC-------AAATGG--GGTGCGCTTGCCGT--    371

BSNT_04371___    372 CATTG-TCCTTCCCTTGAT----------CAGTCATTCTGTTCACAT---    407
                      |||| |..||||||| ||          |.||.|  ||||  ||.|   
RBAM_027100__    372 -ATTGTTATTTCCCTT-ATGGCGCCAATACGGTGA--CTGT--ACCTTAC    415

BSNT_04371___    408 ---CACATTCGCAGAAAGCACTGCTCTATTGTGTTATTTGTTTGGCCTTC    454
                        ||.|||||           |.|.|.||.||.|.|.||||.|||.|.|
RBAM_027100__    416 CGGCATATTCG-----------GGTATGTTTTGCTGTCTGTTCGGCTTCC    454

BSNT_04371___    455 ATATATTCT----TTTTATCCTTAAAGCAAGACAGGATCAGAAAGCCGCG    500
                     |||    ||    |.|||.|..|..|.|.|.||||    |.|||.|.|| 
RBAM_027100__    455 ATA----CTGCAATATTAGCGGTGCACCGACACAG----AAAAAACAGC-    495

BSNT_04371___    501 CTCTATTTCGAGATGG--ATTGGTGATATC----------CTTG-TCAGA    537
                               ||..||  |||.|.|| |||          ||.| |.|.|
RBAM_027100__    496 ----------AGGCGGACATTCGGGA-ATCAGGCGGCAGGCTGGCTGAAA    534

BSNT_04371___    538 GCTATATTTTTTGCTGGTTCTG-------------CTATCCTGATTGT-T    573
                     |          ||.||||||||             .|.|..||||.|| |
RBAM_027100__    535 G----------TGATGGTTCTGATGGCGGGTGCGTTTTTTATGATCGTCT    574

BSNT_04371___    574 TTGACTC--AGTGGCACTTGCTTGCGCTTTTTGGC-------AT-TTTAT    613
                     |||.|.|  |.|||.|.|.||        ||||||       || |.|||
RBAM_027100__    575 TTGCCGCCGAATGGTATTGGC--------TTTGGCCGGCGGGATGTATAT    616

BSNT_04371___    614 TTTTGCTTTTC-TCAGTTATCCGC-------AGTTTGAAAAAGACGGCTT    655
                           |.||| ||.||  |||||       |.||.||||..|||||...
RBAM_027100__    617 ------TGTTCATCTGT--TCCGCTTTTTTGACTTGGAAAGGGACGGAGA    658

BSNT_04371___    656 CGTTCACGGCTTTTGAAGCTGAGGTGACTGAAGAGAAAAAAAGCAGGCTT    705
                     |.||..||||.|||||.|..||.|||..|||.|||||.|...|||.||||
RBAM_027100__    659 CATTATCGGCCTTTGAGGAAGAAGTGCTTGAGGAGAACAGGCGCAAGCTT    708

BSNT_04371___    706 GCCCTTGCAGGACT-TGTGATGATGATGAGTCAGGAGG-------CGGGA    747
                     .|..|.|| ||.|| |||..|||||.|.||.||.||.|       |..||
RBAM_027100__    709 TCATTCGC-GGCCTCTGTTTTGATGCTCAGCCATGATGTGCAGCTCCCGA    757

BSNT_04371___    748 ATGCCAAAAGTAAA-AGACAGGATGAGAAGAAAACCGTTATTATA--CCG    794
                     |||      ||||| |.|.|||  |.|.||.||.|||||.|||||  |||
RBAM_027100__    758 ATG------GTAAACATAAAGG--GCGGAGCAAGCCGTTTTTATATCCCG    799

BSNT_04371___    795 AAATTCAAAAAGGATATTTAAAAGACGAACGATCTGC----ACAGGC-TA    839
                       ..|||||....||.||||.||    ||||.||.||    || ||| |.
RBAM_027100__    800 --GCTCAAAGCACATCTTTACAA----AACGGTCGGCGTATAC-GGCGTG    842

BSNT_04371___    840 TAAGGAATTGTTTTTTAAAGTCATGCTGA---GGAATGGCGAGTATGCGA    886
                     .||.||||||||.|||||||   ||||||   |.||.||||.||||....
RBAM_027100__    843 GAAAGAATTGTTCTTTAAAG---TGCTGATCCGAAACGGCGGGTATATCC    889

BSNT_04371___    887 GGCAGATGTACATGCTATT----GTCAGCTTTCACCGTTCTCATATTTGT    932
                     |||||.|.|||   ||.||    | |.|||||.||.|.|||.||..|.||
RBAM_027100__    890 GGCAGCTTTAC---CTTTTAACCG-CGGCTTTTACGGCTCTTATTCTCGT    935

BSNT_04371___    933 --TTCCCCAATTTGGCTGAAG---------------GTGATTGCGCTGCT    965
                       ||||.|..||.|  |||||               .||.|||||.|   
RBAM_027100__    936 TCTTCCGCTCTTAG--TGAAGCCGGCAGTCCTCATTTTGTTTGCGAT---    980

BSNT_04371___    966 GGTATATACAGGGGTTTGCCGTTATATCCTGACGCTTATTTTTGACAAGG   1015
                                 .||..||||.|||..|..|.|||||.|.||||||..|.
RBAM_027100__    981 ------------CGTCAGCCGCTATGCCGCGTCGCTTTTATTTGACCGGA   1018

BSNT_04371___   1016 TCATGGATGCCCCTTTTTTAATTGGCACCGATAAGGAAAGGGATGAATAT   1065
                     |||.|||....||..||||||..||.|.|.|.|..||.||.|||||.|||
RBAM_027100__   1019 TCACGGACAAACCGGTTTTAAGCGGTATCAAGAGAGACAGTGATGACTAT   1068

BSNT_04371___   1066 TATC-GGGCCAGAAAAAACTGTATCAA-CATCCTGCA---CTATGCGTTT   1110
                     | || ||||..||||.|.| |.||.|| |.||.|.||   | ||..||| 
RBAM_027100__   1069 T-TCAGGGCGCGAAACAGC-GCATTAACCGTCATTCAAGTC-ATCTGTT-   1114

BSNT_04371___   1111 GCCGCCTGTTGTTT--TTTAGCGGCCGCTGTCTCTTT--ATTGTTTACAT   1156
                      |||.|||.|||.|  ||     ||||| |..|||||  .||.||||.||
RBAM_027100__   1115 -CCGTCTGGTGTCTCATT-----GCCGC-GATTCTTTCCGTTCTTTATAT   1157

BSNT_04371___   1157 ---AA   1158
                        | 
RBAM_027100__   1158 GTGA-   1161


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