Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04371 and RBAM_027100
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:50
# Commandline: needle
# -asequence dna-align/BSNT_04371___ythQ.1.9828.seq
# -bsequence dna-align/RBAM_027100___ythQ.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04371___ythQ-RBAM_027100___ythQ.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04371___ythQ-RBAM_027100___ythQ.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04371___ythQ
# 2: RBAM_027100___ythQ
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1305
# Identity: 747/1305 (57.2%)
# Similarity: 747/1305 (57.2%)
# Gaps: 291/1305 (22.3%)
# Score: 1819.0
#
#
#=======================================
BSNT_04371___ 1 ATGAACGGGCGTACGCTCTTTTTTCGAAGGCTGTTTGACTATTACAAGTA 50
||||.||||||..|..|.|||||||.||||||||||.|.||||....|||
RBAM_027100__ 1 ATGACCGGGCGGGCTTTGTTTTTTCAAAGGCTGTTTCATTATTGGCGGTA 50
BSNT_04371___ 51 TCAGTTTAAAGTGTTGCATGCGGTCATTGACTGGACAGTCGCTCTCTATA 100
|||.|..||.|||||.||..||||||||||.|||||.|||||.||.||||
RBAM_027100__ 51 TCAATGGAAGGTGTTTCAGACGGTCATTGATTGGACGGTCGCGCTGTATA 100
BSNT_04371___ 101 TTGTTTTGCCGGCGATTGCTTTTGTCATCTATCAGTATATTGATTTGATG 150
|.|||.|.||.||....||.||||.|.|.|||||.|||..|||.|.|.||
RBAM_027100__ 101 TCGTTCTTCCCGCTGCCGCATTTGCCGTTTATCAATATGCTGAATGGCTG 150
BSNT_04371___ 151 AATGGAAGAGGCCTTCTTTATGAGTGGTCTGAAGTGGC-GGAG------- 192
||.||.||.||.||||||.| ||.||.||| ||||
RBAM_027100__ 151 AACGGCAGGGGGCTTCTTAA---------TGGAGCGGCAGGAGTATTAGG 191
BSNT_04371___ 193 -TGGAGATGGCTGTACGCTGTGT---GTGGGCTGATCATGTTTACAGGCT 238
|||.|.|||||||| |||.| |||..|||.|..|||..||.||.|
RBAM_027100__ 192 ATGGGGCTGGCTGTA---TGTATTCAGTGCCCTGCTGTTGTGCACGGGTT 238
BSNT_04371___ 239 CGATTCGTACATTTTTAATGGAAGCGGACAAAGTGTTTTTGCTGCAAAAG 288
..||||.|||.|||||..||||||||||..|.||.||||||.|||
RBAM_027100__ 239 TTATTCATACCTTTTTGCTGGAAGCGGATCACGTATTTTTGGTGC----- 283
BSNT_04371___ 289 AAAG-AAATCATCT-AT-CAA---CTCAAACGGTACGCGCTTTTGTA--- 329
|.| |||.||||| || ||| ||.||||||||||||||||||||
RBAM_027100__ 284 -ATGCAAAACATCTGATGCAAAAGCTGAAACGGTACGCGCTTTTGTATTC 332
BSNT_04371___ 330 ----TTCTTTTCTCGTCACGATGGCTAAATGGCTGCTTCTCTT----TTT 371
|||.||||.|.|..| |||||| |.|.|.||| |
RBAM_027100__ 333 GATGTTCCTTTCCCTTATC-------AAATGG--GGTGCGCTTGCCGT-- 371
BSNT_04371___ 372 CATTG-TCCTTCCCTTGAT----------CAGTCATTCTGTTCACAT--- 407
|||| |..||||||| || |.||.| |||| ||.|
RBAM_027100__ 372 -ATTGTTATTTCCCTT-ATGGCGCCAATACGGTGA--CTGT--ACCTTAC 415
BSNT_04371___ 408 ---CACATTCGCAGAAAGCACTGCTCTATTGTGTTATTTGTTTGGCCTTC 454
||.||||| |.|.|.||.||.|.|.||||.|||.|.|
RBAM_027100__ 416 CGGCATATTCG-----------GGTATGTTTTGCTGTCTGTTCGGCTTCC 454
BSNT_04371___ 455 ATATATTCT----TTTTATCCTTAAAGCAAGACAGGATCAGAAAGCCGCG 500
||| || |.|||.|..|..|.|.|.|||| |.|||.|.||
RBAM_027100__ 455 ATA----CTGCAATATTAGCGGTGCACCGACACAG----AAAAAACAGC- 495
BSNT_04371___ 501 CTCTATTTCGAGATGG--ATTGGTGATATC----------CTTG-TCAGA 537
||..|| |||.|.|| ||| ||.| |.|.|
RBAM_027100__ 496 ----------AGGCGGACATTCGGGA-ATCAGGCGGCAGGCTGGCTGAAA 534
BSNT_04371___ 538 GCTATATTTTTTGCTGGTTCTG-------------CTATCCTGATTGT-T 573
| ||.|||||||| .|.|..||||.|| |
RBAM_027100__ 535 G----------TGATGGTTCTGATGGCGGGTGCGTTTTTTATGATCGTCT 574
BSNT_04371___ 574 TTGACTC--AGTGGCACTTGCTTGCGCTTTTTGGC-------AT-TTTAT 613
|||.|.| |.|||.|.|.|| |||||| || |.|||
RBAM_027100__ 575 TTGCCGCCGAATGGTATTGGC--------TTTGGCCGGCGGGATGTATAT 616
BSNT_04371___ 614 TTTTGCTTTTC-TCAGTTATCCGC-------AGTTTGAAAAAGACGGCTT 655
|.||| ||.|| ||||| |.||.||||..|||||...
RBAM_027100__ 617 ------TGTTCATCTGT--TCCGCTTTTTTGACTTGGAAAGGGACGGAGA 658
BSNT_04371___ 656 CGTTCACGGCTTTTGAAGCTGAGGTGACTGAAGAGAAAAAAAGCAGGCTT 705
|.||..||||.|||||.|..||.|||..|||.|||||.|...|||.||||
RBAM_027100__ 659 CATTATCGGCCTTTGAGGAAGAAGTGCTTGAGGAGAACAGGCGCAAGCTT 708
BSNT_04371___ 706 GCCCTTGCAGGACT-TGTGATGATGATGAGTCAGGAGG-------CGGGA 747
.|..|.|| ||.|| |||..|||||.|.||.||.||.| |..||
RBAM_027100__ 709 TCATTCGC-GGCCTCTGTTTTGATGCTCAGCCATGATGTGCAGCTCCCGA 757
BSNT_04371___ 748 ATGCCAAAAGTAAA-AGACAGGATGAGAAGAAAACCGTTATTATA--CCG 794
||| ||||| |.|.||| |.|.||.||.|||||.||||| |||
RBAM_027100__ 758 ATG------GTAAACATAAAGG--GCGGAGCAAGCCGTTTTTATATCCCG 799
BSNT_04371___ 795 AAATTCAAAAAGGATATTTAAAAGACGAACGATCTGC----ACAGGC-TA 839
..|||||....||.||||.|| ||||.||.|| || ||| |.
RBAM_027100__ 800 --GCTCAAAGCACATCTTTACAA----AACGGTCGGCGTATAC-GGCGTG 842
BSNT_04371___ 840 TAAGGAATTGTTTTTTAAAGTCATGCTGA---GGAATGGCGAGTATGCGA 886
.||.||||||||.||||||| |||||| |.||.||||.||||....
RBAM_027100__ 843 GAAAGAATTGTTCTTTAAAG---TGCTGATCCGAAACGGCGGGTATATCC 889
BSNT_04371___ 887 GGCAGATGTACATGCTATT----GTCAGCTTTCACCGTTCTCATATTTGT 932
|||||.|.||| ||.|| | |.|||||.||.|.|||.||..|.||
RBAM_027100__ 890 GGCAGCTTTAC---CTTTTAACCG-CGGCTTTTACGGCTCTTATTCTCGT 935
BSNT_04371___ 933 --TTCCCCAATTTGGCTGAAG---------------GTGATTGCGCTGCT 965
||||.|..||.| ||||| .||.|||||.|
RBAM_027100__ 936 TCTTCCGCTCTTAG--TGAAGCCGGCAGTCCTCATTTTGTTTGCGAT--- 980
BSNT_04371___ 966 GGTATATACAGGGGTTTGCCGTTATATCCTGACGCTTATTTTTGACAAGG 1015
.||..||||.|||..|..|.|||||.|.||||||..|.
RBAM_027100__ 981 ------------CGTCAGCCGCTATGCCGCGTCGCTTTTATTTGACCGGA 1018
BSNT_04371___ 1016 TCATGGATGCCCCTTTTTTAATTGGCACCGATAAGGAAAGGGATGAATAT 1065
|||.|||....||..||||||..||.|.|.|.|..||.||.|||||.|||
RBAM_027100__ 1019 TCACGGACAAACCGGTTTTAAGCGGTATCAAGAGAGACAGTGATGACTAT 1068
BSNT_04371___ 1066 TATC-GGGCCAGAAAAAACTGTATCAA-CATCCTGCA---CTATGCGTTT 1110
| || ||||..||||.|.| |.||.|| |.||.|.|| | ||..|||
RBAM_027100__ 1069 T-TCAGGGCGCGAAACAGC-GCATTAACCGTCATTCAAGTC-ATCTGTT- 1114
BSNT_04371___ 1111 GCCGCCTGTTGTTT--TTTAGCGGCCGCTGTCTCTTT--ATTGTTTACAT 1156
|||.|||.|||.| || ||||| |..||||| .||.||||.||
RBAM_027100__ 1115 -CCGTCTGGTGTCTCATT-----GCCGC-GATTCTTTCCGTTCTTTATAT 1157
BSNT_04371___ 1157 ---AA 1158
|
RBAM_027100__ 1158 GTGA- 1161
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