Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04370 and RBAM_027090
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:50
# Commandline: needle
# -asequence dna-align/BSNT_04370___ytiP.1.9828.seq
# -bsequence dna-align/RBAM_027090___ytiP.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04370___ytiP-RBAM_027090___ytiP.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04370___ytiP-RBAM_027090___ytiP.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04370___ytiP
# 2: RBAM_027090___ytiP
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1316
# Identity: 1014/1316 (77.1%)
# Similarity: 1014/1316 (77.1%)
# Gaps: 28/1316 ( 2.1%)
# Score: 3827.5
#
#
#=======================================
BSNT_04370___ 1 ATGTTTCATCTAAAAGAGCAGCAAACATCCATAAAGCAAGAAATCATAGC 50
|||||||||||..|..||||.|||||..|.|||||...||||||.|..||
RBAM_027090__ 1 ATGTTTCATCTCGACAAGCATCAAACGACAATAAAAAGAGAAATTACCGC 50
BSNT_04370___ 51 AGGGCTGACGACCTTTTTCACAATGGTCTATATCGTCGTGGTCAATCCGG 100
.||..||||.|||||||||||||||||.||||||.|.||.||||||||||
RBAM_027090__ 51 GGGATTGACCACCTTTTTCACAATGGTGTATATCATTGTCGTCAATCCGG 100
BSNT_04370___ 101 TCATTCTGGCTAACGCCGGGGTTCCTTTCGACCAGGTGTTCACCGCAACG 150
|.||.||..|.||.||.||..||||.||.|||||||||||||||||.|||
RBAM_027090__ 101 TGATCCTTTCCAATGCGGGAATTCCGTTTGACCAGGTGTTCACCGCGACG 150
BSNT_04370___ 151 ATTATTGCCTCCATTGTCGGAACGCTGTGGATGGCCCTGGCAGCAAATTA 200
|||||.||.||||||||||||||..|.||||||||.||.||.||.||||.
RBAM_027090__ 151 ATTATCGCTTCCATTGTCGGAACTTTATGGATGGCTCTCGCTGCGAATTT 200
BSNT_04370___ 201 TCCGATTGCTATTGCGCCCGGCATGGGCTTGAACGCTTATTTAGCCTTTC 250
||||||.||.|||||.||||||||||||||.|||||.|||.|.|||||||
RBAM_027090__ 201 TCCGATCGCCATTGCCCCCGGCATGGGCTTAAACGCGTATCTCGCCTTTC 250
BSNT_04370___ 251 ATGTCGTAAGCGCAAGCGATGGCGGCATCACGTACGCA-ACAGCTTTCAG 299
|.||.||..||.||.|| .|||||||.||||| .|| ||.||||||||
RBAM_027090__ 251 ACGTTGTCGGCACAGGC---AGCGGCATTACGTA-TCAGACGGCTTTCAG 296
BSNT_04370___ 300 CGCAGTATTTACAGCAGGGGTTCTCTTCATTATTCTATCGTTAACGCCTT 349
|||.||.||||..||.||.||..||||.||||||.|||||||||||||||
RBAM_027090__ 297 CGCCGTTTTTATCGCGGGAGTCATCTTTATTATTTTATCGTTAACGCCTT 346
BSNT_04370___ 350 TAAGAAAACAACTTATAGAAGCGATTCCAAACAATTTAAAATACGGGATC 399
||||||||||||||||||||||||||||..||||||||||||||||.||.
RBAM_027090__ 347 TAAGAAAACAACTTATAGAAGCGATTCCGGACAATTTAAAATACGGAATT 396
BSNT_04370___ 400 ACAACTGGGATCGGGCTGTTTATTGCTTTTATCGGTTTGCGTCAAGCGGG 449
||.||.||.|||||..|.|||||.|||||||||||.||.||.|||.|.||
RBAM_027090__ 397 ACGACCGGCATCGGCTTATTTATCGCTTTTATCGGCTTACGCCAATCCGG 446
BSNT_04370___ 450 CATTGTGGCAGCTGATGAGTCAAACCTGGTCACTCTCGGCAATCTGCATT 499
.||..|..|.||||||.|.||.||.||||||.|.||||||.||||.||||
RBAM_027090__ 447 AATCATCACGGCTGATAAATCTAATCTGGTCGCACTCGGCGATCTTCATT 496
BSNT_04370___ 500 CACCTGGTGTTATCTTAACGCTGGTTGGCCTTTTGATCAGCGTGGTCCTG 549
|.||.|..||.||.||||||||..|.||.|||.|.|||||..|.||.|||
RBAM_027090__ 497 CGCCCGCCGTCATTTTAACGCTTATCGGACTTATCATCAGTATTGTACTG 546
BSNT_04370___ 550 ATGGTGCTGAATGTAAGCGGCGCTTTATTTATCGGAATGGCAGCT-ACCG 598
||||||||||||||.|.|||.|||.|.||.||||||||||| ||| ||||
RBAM_027090__ 547 ATGGTGCTGAATGTTAACGGGGCTCTGTTCATCGGAATGGC-GCTGACCG 595
BSNT_04370___ 599 CTTTGATCGCCTTTTTCACCGGTCAGCTCCATTTTCCAAAGGGATTTATG 648
|..|.||.||||||||.|||||.|||.|.|||||..|.||.|||||.|||
RBAM_027090__ 596 CCGTCATTGCCTTTTTGACCGGGCAGATTCATTTCGCGAAAGGATTCATG 645
BSNT_04370___ 649 TCGCTT-CCTCATTTGCCGGAAGGATTGATGATCTCAAATCCATTTACCG 697
|| ||| ||.||..|||||||.||..|..|.|||.|||||||.||....|
RBAM_027090__ 646 TC-CTTCCCGCACCTGCCGGAGGGGCTTTTAATCACAAATCCGTTCGGAG 694
BSNT_04370___ 698 CTTTTGGCGATGTCATTCATCACGGCCTGTACGCTGTCGTCTTTTCTTTT 747
|..|.||.||||||.|.||||||||.||||||||.||.||.|||||||||
RBAM_027090__ 695 CCCTCGGGGATGTCGTGCATCACGGTCTGTACGCCGTTGTGTTTTCTTTT 744
BSNT_04370___ 748 CTATTAGTCACCATTTTTGATACGACAGGCACGATGATCGGAGTTGCCGA 797
||..|.||.||.||||||||.|||||.|||||.||||||||.||.|||||
RBAM_027090__ 745 CTTCTCGTTACGATTTTTGACACGACCGGCACCATGATCGGTGTCGCCGA 794
BSNT_04370___ 798 GCAAGCCGGGCTGATGAAAAACAACAAGCTGCCTAACGTGC--GAAAAGC 845
.|||||.||.|||||.||||||||..|||||||.|| ||| |||.|||
RBAM_027090__ 795 ACAAGCGGGACTGATCAAAAACAATCAGCTGCCGAA--TGCCAGAAGAGC 842
BSNT_04370___ 846 GCTGCTTGCTGATTCAACAGCGACGACAGTAGG-AGCTGTTTTCGGCACA 894
||||.|.|||||||||||.||.|||||.||.|| ||| .|.||||||||.
RBAM_027090__ 843 GCTGTTGGCTGATTCAACCGCTACGACGGTGGGAAGC-ATCTTCGGCACC 891
BSNT_04370___ 895 AGTCCGACGACCGCATTTATCGAATCTTCCGCCGGTGTCGCAGCCGGGGG 944
||||||||||||||.||..|.||||||||.||.|||||.||.|||||.||
RBAM_027090__ 892 AGTCCGACGACCGCGTTCGTTGAATCTTCAGCAGGTGTGGCGGCCGGCGG 941
BSNT_04370___ 945 AAGAACGGGGCTTACGGCTTTGACTGTCGCGGTGATGTTTGCGGCTTCAA 994
|||||||||.||.|||||..||||..|.||.||.||||||||.|.|||.|
RBAM_027090__ 942 AAGAACGGGTCTGACGGCGCTGACGATTGCCGTTATGTTTGCCGTTTCCA 991
BSNT_04370___ 995 TGTTTTTCAGTCCGCTTGTCAGCGCCTTGTCCG--GTATAGCCGCCATCA 1042
||||||||||.|||||||||||||.|||.||.| ||.| ||||.||.|
RBAM_027090__ 992 TGTTTTTCAGCCCGCTTGTCAGCGTCTTATCGGAAGTGT--CCGCGATTA 1039
BSNT_04370___ 1043 CCTCGCCTGCTTTGATTATCGTCGGCAGCTTGATGATGGGCTCGGTTTCC 1092
|.||.||.|||.|||||||.|||||||||.||||||||||..|.||.||.
RBAM_027090__ 1040 CGTCACCGGCTCTGATTATTGTCGGCAGCCTGATGATGGGTGCTGTGTCG 1089
BSNT_04370___ 1093 AATATGAACTGGAAAGAGATGGACGAGGCATTTCCAGCGTTTCTCGTCAT 1142
|||||...||||||.|||.|.||.||.||.||.||.||.|||||||||||
RBAM_027090__ 1090 AATATCCGCTGGAATGAGCTTGATGAAGCGTTCCCGGCCTTTCTCGTCAT 1139
BSNT_04370___ 1143 TCTGGCCATGCCTTTGACATCCAGCATTTCTACAGGAATTGCGCTTGGCT 1192
|.||||.||||||||.||.|||||.|||||.||.|||||.||.||.||||
RBAM_027090__ 1140 TTTGGCGATGCCTTTAACGTCCAGTATTTCAACCGGAATCGCACTCGGCT 1189
BSNT_04370___ 1193 TTATTTCATATCCGATCGTAAAAGCGGCGCGGGGAAAATGGAGAGAGATT 1242
|.||||||||||||.|.||.|||||.||...|..|||||||.|.||.||.
RBAM_027090__ 1190 TCATTTCATATCCGCTTGTTAAAGCAGCTAAGAAAAAATGGCGCGAAATC 1239
BSNT_04370___ 1243 CATCCGCTCGTCATCGTTTTCGCCATTCTGTTTTTCATCCAGCTGTTTAT 1292
|||||..|.||||||.|.||||||.|.||||||||.||.|||||.|||||
RBAM_027090__ 1240 CATCCTTTAGTCATCATCTTCGCCGTGCTGTTTTTTATTCAGCTTTTTAT 1289
BSNT_04370___ 1293 TTT--------ATAA- 1299
||| ||.|
RBAM_027090__ 1290 TTTGAACGGTCATTAA 1305
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