Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04369 and RBAM_027080
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:50
# Commandline: needle
# -asequence dna-align/BSNT_04369___pepV.1.9828.seq
# -bsequence dna-align/RBAM_027080___ytjP.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04369___pepV-RBAM_027080___ytjP.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04369___pepV-RBAM_027080___ytjP.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04369___pepV
# 2: RBAM_027080___ytjP
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1456
# Identity: 1058/1456 (72.7%)
# Similarity: 1058/1456 (72.7%)
# Gaps: 128/1456 ( 8.8%)
# Score: 3813.5
#
#
#=======================================
BSNT_04369___ 1 ATGAACTGGGAAGTTGAAGTGATCAGAAAAAAAGAGGATTTAATTCGTGA 50
||||||||||||||||||||.||||||||.|||||.|||.|.||.|||||
RBAM_027080__ 1 ATGAACTGGGAAGTTGAAGTCATCAGAAACAAAGAAGATCTGATCCGTGA 50
BSNT_04369___ 51 TACGCAGGAATTTTTG-AGAATCAACAGTGTCATGGACGAAACAACCGCC 99
.||||||.|.|||||| || ||||||||.||.|||||||||.||||.|||
RBAM_027080__ 51 CACGCAGAAGTTTTTGCAG-ATCAACAGCGTAATGGACGAATCAACAGCC 99
BSNT_04369___ 100 GGACCCGGTAAACCGTTTGGAGAAGGGGTAAACGCCAGCCTGACTTCATT 149
||.|||||....||||||||||||||.||.||.|||||||||||.|||.|
RBAM_027080__ 100 GGTCCCGGCCGGCCGTTTGGAGAAGGCGTCAATGCCAGCCTGACGTCACT 149
BSNT_04369___ 150 GCTGGAGCTTGGAGAAAAAGAAGGCTTTACAACAAAAAATCTTGACGGCT 199
||||||..|.||.||||||||||||||.||...|||.||||||||.||||
RBAM_027080__ 150 GCTGGAATTCGGTGAAAAAGAAGGCTTCACCGTAAAGAATCTTGATGGCT 199
BSNT_04369___ 200 TTGCAGGTCATATTGAATGGGGGGAGGGCGATGACATTATCGGCGTACTT 249
.|||.||.||||||||||||||...|||.||.||.||..|||||||.||.
RBAM_027080__ 200 ATGCGGGCCATATTGAATGGGGAACGGGTGACGAAATCGTCGGCGTTCTG 249
BSNT_04369___ 250 TGCCATGTTGACGTCGTGCCGCCGGGAGATGGGTGGACGAGTGATCCATT 299
|||||.||.||.|||||.|||||.|||||.||.||||||||.|||||.||
RBAM_027080__ 250 TGCCACGTCGATGTCGTTCCGCCCGGAGACGGCTGGACGAGCGATCCGTT 299
BSNT_04369___ 300 TTCAGCTGAAATCCGCAACGGACGGATTTATGCAAGGGGCGCCATTGATG 349
||||||.||.|||.|..||||.|||||.|||||.||.|||||||||||||
RBAM_027080__ 300 TTCAGCCGATATCAGGGACGGCCGGATATATGCCAGAGGCGCCATTGATG 349
BSNT_04369___ 350 ACAAAGGCCCGACAATGGCGGCATTCTACGCGCTGAAAATCGTGAAAGAC 399
|.|||||.||||||||||||||.||.||.||||||||||||||.||||||
RBAM_027080__ 350 ATAAAGGGCCGACAATGGCGGCGTTTTATGCGCTGAAAATCGTCAAAGAC 399
BSNT_04369___ 400 ATGAATTTGCCCCTGTCCAAGCGAGTCAGAATGATTATCGGAACAGATGA 449
|||.|..|.||..|.|||||.||.||.|||||.||.||||||||.|||||
RBAM_027080__ 400 ATGCAGCTTCCTTTATCCAAACGCGTGAGAATCATCATCGGAACGGATGA 449
BSNT_04369___ 450 AGAAAGTGATTGGAGATGCGTAGAGCATTATTTCAAGCATGAAGAAATGC 499
|||||||||||||||||||||.||.||.||.|||||.||.|||.||||||
RBAM_027080__ 450 AGAAAGTGATTGGAGATGCGTGGATCACTACTTCAAACACGAAAAAATGC 499
BSNT_04369___ 500 C-AACAATGGGCTTTGCGCCTGACGCCGATTTTCCGATCATTAATGCGGA 548
| .|| ||.||||||||.||||||||.|||||||||||||||||.|||||
RBAM_027080__ 500 CTGAC-ATCGGCTTTGCTCCTGACGCGGATTTTCCGATCATTAACGCGGA 548
BSNT_04369___ 549 AAAAGGGATCATCGATGCTTCTTTACTTATTCCACACCGTCCAAATCAAG 598
||||||.||.||.|||||.||..|.|..|||.|||| |||
RBAM_027080__ 549 AAAAGGAATTATAGATGCGTCACTGCGCATTGCACA-----------AAG 587
BSNT_04369___ 599 -----CAGAACCAAAG--GCA------GTGCTTGTCTCGTTTCAATCAGG 635
|.|| ||||| ||| |.||||.|.||.||.|..|||||
RBAM_027080__ 588 CGCTTCTGA--CAAAGACGCAAAAAACGGGCTTCTGTCATTCCGTTCAGG 635
BSNT_04369___ 636 CCTTCGTTTGAACATGGTGCCTGATGCTGCGGAAGCTGTCATTGAAGGGC 685
.|||||.||||||||||||||.|||||.||.|||||.||.|||||||||
RBAM_027080__ 636 ACTTCGCTTGAACATGGTGCCGGATGCGGCTGAAGCGGTTATTGAAGGG- 684
BSNT_04369___ 686 CGAAAAATGAAGAGATTCTGTCTTCATTTAAAGACATGC---------TC 726
|| |.|||||.|| |.|.||| ||
RBAM_027080__ 685 -------------GA--CGGTCTTGAT-----GCCGTGCACGCATATTTC 714
BSNT_04369___ 727 CGCA-------CGA-CGGACCAAA----AAGGGGAAGCTG-------CAA 757
.||| .|| |.|.|.||| ||||.|||||.| .||
RBAM_027080__ 715 AGCAAATGGCTTGAGCAGTCAAAAACACAAGGTGAAGCAGTTTCGGAAAA 764
BSNT_04369___ 758 TAGAGAACGGACAGCTCATTTTGCGTATGTACGGTCTTTCCTGCCATGCG 807
|.||.|||.||| || ||.|.||| |||||....||.|||||.|||
RBAM_027080__ 765 TGGAAAACTGAC-GC----TTCGGGTA--TACGGAAAATCATGCCACGCG 807
BSNT_04369___ 808 ATGGAACCGAACAATGGGATCAATGCCGGTATTTTATTG--TGC-GAATT 854
|||||||||.|.|||||..|||||||||| .|||..| ||| ||||.
RBAM_027080__ 808 ATGGAACCGGATAATGGTGTCAATGCCGG---CTTAAAGCTTGCTGAATG 854
BSNT_04369___ 855 TCTCCAGCAG-ACTGAGCTTGACGATGCAGGAAAGCGGTTTGTGCAA--- 900
.|| .|.|.| ||.|||||.||.|..||.|||||||..||||| |||
RBAM_027080__ 855 CCT-TAACGGAACGGAGCTGGATGGAGCCGGAAAGCACTTTGT-CAAAAC 902
BSNT_04369___ 901 -GT-TGTGACAGATAAGTTCTCAGGTGATACAAGAGGAAAAAAACTGGAC 948
|| .||||| .|.||.|.|..|||||||.||||.|||||.|||.|.
RBAM_027080__ 903 CGTCAGTGAC----TATTTTTTAAATGATACACGAGGCAAAAAGCTGAAA 948
BSNT_04369___ 949 ATCGACTGTGAGGATGAAATCAGCGGTGAGCTGACATTAAATGTCGGAAC 998
||.||.||...||||||.||||||||.|||||.|||||.||||||||.||
RBAM_027080__ 949 ATTGATTGCAGGGATGACATCAGCGGAGAGCTTACATTGAATGTCGGCAC 998
BSNT_04369___ 999 ACTGCGCT----ATAAAG-AAGGGCAAGG-AGGCGAGCTCGGGATCAATA 1042
|| |||.|| |||||..||| |||.||.|||||.|||||.|
RBAM_027080__ 999 ------CTTTACATACAGAAAGGGTGAGGAAGGAGAACTCGGCATCAACA 1042
BSNT_04369___ 1043 TCCGCTATCCTGTGACAGCAGAAAGCAAAGCGATTCGCGATGCATTCGAA 1092
||||.|||||.||.||..||||.|||||.|..||.||.|||||.||
RBAM_027080__ 1043 TCCGTTATCCCGTCACTTCAGACAGCAATGTCATCCGTGATGCTTT---- 1088
BSNT_04369___ 1093 AGTGCATCT------GAATTTGATCTGGGAGAATTCAAAGACAGCAAGCC 1136
|.|.||| |||||....||.|.||||||.|||||||||||.||
RBAM_027080__ 1089 --TACGTCTGCTGAAGAATTCCGGCTTGAAGAATTTAAAGACAGCAAACC 1136
BSNT_04369___ 1137 GCATCACGTGACCGCAGATCATCCGTTAGTCAAAACCCTGCAAAAGGTTT 1186
|||.|||||..|.||.|||||||||.|.||.||.||.||.||||||||||
RBAM_027080__ 1137 GCACCACGTTTCTGCCGATCATCCGCTCGTAAAGACGCTTCAAAAGGTTT 1186
BSNT_04369___ 1187 ATGAAGGCCAGCTGGGTAAAAAAGCTGACTTAATCTCAATCGGCGGGGGG 1236
|.|||||.|||..|||.||.|||||.||..|.||.|||||||||||.||.
RBAM_027080__ 1187 ACGAAGGACAGACGGGAAAGAAAGCGGATCTGATTTCAATCGGCGGAGGA 1236
BSNT_04369___ 1237 ACATATGCGAGATCCTTAAAAGCCGGTGTCGCGTTCGGCCCGCTGTTCCC 1286
||.||||||||||||.|....||.||.|||||||||||.|||||||||||
RBAM_027080__ 1237 ACGTATGCGAGATCCCTTTCGGCGGGCGTCGCGTTCGGGCCGCTGTTCCC 1286
BSNT_04369___ 1287 CGGACGCCCTGACAGCGCACACCAAAAGGATGAATATATCGAAATTGATG 1336
|||.||.|||||||||||.||.|||||||||||.||.||.|||||.||||
RBAM_027080__ 1287 CGGCCGGCCTGACAGCGCGCATCAAAAGGATGAGTACATTGAAATCGATG 1336
BSNT_04369___ 1337 ACCTGCTGAGATCGACAGCGTTATATGCTCAGGCCATTTACGAGCTTGCA 1386
||||.||..|.||.||.||.|||||.||..|.||||||||.||||||||.
RBAM_027080__ 1337 ACCTTCTCCGGTCAACCGCTTTATACGCCGAAGCCATTTATGAGCTTGCC 1386
BSNT_04369___ 1387 AAATAA 1392
||.|.|
RBAM_027080__ 1387 AAGTGA 1392
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