Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04353 and RBAM_026990
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:49
# Commandline: needle
# -asequence dna-align/BSNT_04353___malS.1.9828.seq
# -bsequence dna-align/RBAM_026990___malS.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04353___malS-RBAM_026990___malS.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04353___malS-RBAM_026990___malS.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04353___malS
# 2: RBAM_026990___malS
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1715
# Identity: 1307/1715 (76.2%)
# Similarity: 1307/1715 (76.2%)
# Gaps: 31/1715 ( 1.8%)
# Score: 4869.0
#
#
#=======================================
BSNT_04353___ 1 GTGAAACAATTCAAAGTAACAAACGAAGGAGACATTCAAACAACATTAAG 50
|||||.|||||..||||.||.||.||.|||||.||..||||||||.|..|
RBAM_026990__ 1 GTGAATCAATTTCAAGTGACGAAAGATGGAGAAATCAAAACAACACTGCG 50
BSNT_04353___ 51 AGGCCTTGAAGTGCTCTCTGTTCCTTTTTTGAACAAAGGTGTTGCTTTTA 100
.||..|.||||||||.|||...||||||||.||.|||||.||.||.||||
RBAM_026990__ 51 CGGATTAGAAGTGCTTTCTACGCCTTTTTTAAATAAAGGGGTGGCCTTTA 100
BSNT_04353___ 101 CTGAGGAAGAAAGAAAAGAACTTGGTTTAAAAGGCTTTCTGCCGCCCAAG 150
|..||||.||||||||.|||||.||..|..|.||.|||||||||||.||.
RBAM_026990__ 101 CACAGGAGGAAAGAAAGGAACTCGGGCTCGAGGGGTTTCTGCCGCCGAAA 150
BSNT_04353___ 151 GTATTAACAATTGACGATCAGGCGAAAAGAGCGTATGAACAATATTCCG- 199
|||||.|||||.||.||.|||||||...|.||.||.||||| ||||.|
RBAM_026990__ 151 GTATTGACAATCGAAGAGCAGGCGAGGCGGGCCTACGAACA--ATTCAGT 198
BSNT_04353___ 200 -CACAGCCTGACGATTTGAGCAAAAATGTCTATTTAACTGCGCTGCACGA 248
|.||||||||.||..||||||||||.||.||.||.||.||.||.||.||
RBAM_026990__ 199 TCGCAGCCTGATGAGCTGAGCAAAAACGTGTACTTGACCGCTCTCCATGA 248
BSNT_04353___ 249 TCGGAATGAAACGCTGTTTTACCGCCTGTTAAATGACCATTTAGGGGAAA 298
.||||||||||||.|.||||||.|.|||||||||||.||||||||.||||
RBAM_026990__ 249 CCGGAATGAAACGTTATTTTACAGGCTGTTAAATGATCATTTAGGCGAAA 298
BSNT_04353___ 299 TGCTCCCGATTGTCTACACACCGACAGTCGGAACGGCAATCCAGAGATAC 348
||||.|||||.||.||.||.|||||.|||||.||.||.||||||.|.|||
RBAM_026990__ 299 TGCTGCCGATCGTATATACGCCGACCGTCGGCACCGCGATCCAGCGTTAC 348
BSNT_04353___ 349 AGCCATGAATACAGAAAACCACGAGGGCTCTATCTGTCAATCGATGACCC 398
||||||||.|||||||||||.||.||.||.|||.|||||||.|||||.||
RBAM_026990__ 349 AGCCATGAGTACAGAAAACCCCGCGGTCTGTATTTGTCAATAGATGATCC 398
BSNT_04353___ 399 GGACGGTATGAAAGAAGCATTTAAACAGTAT----AAAGATCAAAGCGAT 444
.||.||.|||...|..||||||.|.|||| | |||.||.|||.|
RBAM_026990__ 399 TGAGGGAATGCGCGCCGCATTTCAGCAGT-TCGGAAAAAATGAAAAC--- 444
BSNT_04353___ 445 ACGATCGATTTAATTGTTGCAACTGATGCGGAAGGAATTTTAGGGATCGG 494
||.||.|||||.|||||.||.||||||||.||.|||.|.||.|||||
RBAM_026990__ 445 ---ATTGACTTAATCGTTGCCACAGATGCGGAGGGCATTCTGGGAATCGG 491
BSNT_04353___ 495 TGACTGGGGCGTCGGAGGAATCGCGATTTCTATTGGAAAGCTGGCGGTTT 544
|||||||||||||||.||.|||||.||||||.|.|||||.||.|||||.|
RBAM_026990__ 492 TGACTGGGGCGTCGGCGGCATCGCCATTTCTGTCGGAAAACTCGCGGTGT 541
BSNT_04353___ 545 ATACAGCGGCTGCGGGCATTGATCCGAGCA-GAGTGCTGGCTGTTGTTTT 593
||||.|||||.||.||.|||||||| |.|| |||||||.||.||.||.||
RBAM_026990__ 542 ATACGGCGGCGGCCGGAATTGATCC-ATCACGAGTGCTTGCGGTCGTATT 590
BSNT_04353___ 594 AGATGCGGGGACAAATCAGGAGAGCCTCTTGAACGATCCGCTTTATGTCG 643
.||.|||||||||||||||||.||||||||.||.||.|||||.|||||||
RBAM_026990__ 591 GGACGCGGGGACAAATCAGGAAAGCCTCTTAAATGACCCGCTGTATGTCG 640
BSNT_04353___ 644 GCAACCAGCATTCTAGAGTGCGCG--GAGAACGCTATGACCAATTTATTG 691
|.|||||||||||.|||||||||| ||||| .|||||||..|||||||
RBAM_026990__ 641 GAAACCAGCATTCAAGAGTGCGCGGCGAGAA--ATATGACCGCTTTATTG 688
BSNT_04353___ 692 ACGACTACGTTGCGCTGGCGAGAGAAACATTTCCGAATGCATTGCTGCAT 741
|.||.||.||..||||.||..|.||||||||.||||||||..||||.|||
RBAM_026990__ 689 ATGAGTATGTCTCGCTTGCCCGGGAAACATTCCCGAATGCGCTGCTTCAT 738
BSNT_04353___ 742 TGGGAGGATTTCGGGGCGAAAAACGCTCGAAGCATTTTGAAACGCTATAA 791
||||||||||||||..||...|||||.||..||||.||.|||||.|||||
RBAM_026990__ 739 TGGGAGGATTTCGGTACGGCTAACGCCCGCGGCATATTAAAACGGTATAA 788
BSNT_04353___ 792 AGATAAAGTGTGTACCTTCAATGATGATATCCAAGGAACTGGCGCTGTTT 841
|||||||||.|||||.||.||.|||||.||.||||||||.|||||.||.|
RBAM_026990__ 789 AGATAAAGTCTGTACGTTTAACGATGACATTCAAGGAACGGGCGCGGTAT 838
BSNT_04353___ 842 CTTTGGCCGCAGTCTTATCCTGTGCAAAAGCGTCTAAAGTTCCATTGAGG 891
|..|.||.||.||.|||.|.|||||||||||.||.|||||.||.||.|..
RBAM_026990__ 839 CGCTTGCAGCTGTTTTAGCGTGTGCAAAAGCATCAAAAGTGCCTTTAAAA 888
BSNT_04353___ 892 GATCACAGAGTTGTTATATTCGGAGCGGGAACGGCAGGAATCGGAATTGC 941
||.||.|.|||.||..|.|||||.|||||||||||.||.|||||||||||
RBAM_026990__ 889 GAGCATAAAGTCGTCGTCTTCGGCGCGGGAACGGCCGGTATCGGAATTGC 938
BSNT_04353___ 942 CGAACAGCTGCGGGAAGCATTGGTGCGCGAGGGACTGAGTGAAGAAGAAT 991
.||.||||||||.|||||..||||||..||.|||.|.||.||||||||||
RBAM_026990__ 939 TGAGCAGCTGCGCGAAGCCATGGTGCATGACGGATTAAGCGAAGAAGAAT 988
BSNT_04353___ 992 CATACAAGCGCTTCTGGTGCATAGACAGAAACGGGCTGTTAACAGATGAT 1041
|.||||..|..||.|||||.||.|||||||||||..|||||||.||||||
RBAM_026990__ 989 CCTACAGCCATTTTTGGTGTATCGACAGAAACGGATTGTTAACGGATGAT 1038
BSNT_04353___ 1042 ATGGATCAGCTT-CTTGATTTCCAAAAGCCGTATGCTCGTTCGGCTGATG 1090
|||.|..| ||| |.||||||.||....|||||.||.||..|.|||||||
RBAM_026990__ 1039 ATGAAGGA-CTTGCGTGATTTTCAGGTTCCGTACGCGCGCCCTGCTGATG 1087
BSNT_04353___ 1091 AAGTAAAGGATTATCAG-CGGAACGGAGACGGCGGAGGCATTGATCTTCT 1139
||||.||.||.|| |.| ||.|.|||.||.||||||...||.|||||...
RBAM_026990__ 1088 AAGTGAAAGAGTA-CGGCCGCAGCGGTGAAGGCGGATCAATCGATCTGGC 1136
BSNT_04353___ 1140 TGAAGTGGTCCGGCAGGCAAAACCGACGATCCTGATCGGCACATCTACGG 1189
.||...|||.||.|||||.||.||||||||.||||||||||||||.||.|
RBAM_026990__ 1137 GGAGACGGTGCGTCAGGCCAAGCCGACGATTCTGATCGGCACATCCACCG 1186
BSNT_04353___ 1190 TTTCCGGCGCTTTCACTGAAGAAATTGTAAAAGAAATGGCGTCACATGTG 1239
|.||.|||||.||.||.||||||||.||.|||||||||||.||||||||.
RBAM_026990__ 1187 TATCAGGCGCATTTACGGAAGAAATCGTCAAAGAAATGGCCTCACATGTC 1236
BSNT_04353___ 1240 AAACGGCCCGCGATTTTGCCAATGTCAAATCCGACAACTCTTTCTGAAGC 1289
||||||||.||.||||||||.||||||||.|||||.||..|.||.|||||
RBAM_026990__ 1237 AAACGGCCGGCTATTTTGCCGATGTCAAACCCGACGACATTATCAGAAGC 1286
BSNT_04353___ 1290 AAAGCCGGAGGATTTAATCGAATGGACAGAAGGCCGTGCGCTGATCACGA 1339
|||.||.||.|||||.||..|||||||.||||||||.|||||..||||.|
RBAM_026990__ 1287 AAAACCTGAAGATTTGATTAAATGGACGGAAGGCCGCGCGCTTGTCACTA 1336
BSNT_04353___ 1340 CAGGAAGCCCGTTCCCGCCAGTTGAATATAACGGAGTTACGTATCATATC 1389
|.||.||.|||||.|||||.||||..|||||.||.|||||.||.||||||
RBAM_026990__ 1337 CGGGTAGTCCGTTTCCGCCTGTTGCGTATAAAGGCGTTACCTACCATATC 1386
BSNT_04353___ 1390 GGGCAGGCAAACAACGCGCTTGTCTTCCCTGGTCTCGGTCTTGGAACGAT 1439
||.|||||.|||||||||||.||.|||||.||.|||||.||.||||||||
RBAM_026990__ 1387 GGACAGGCGAACAACGCGCTCGTATTCCCGGGACTCGGGCTCGGAACGAT 1436
BSNT_04353___ 1440 TGTTACCAAATCAAAATTAATTACCGACGGCATGTTTGAAGCATGTGCCC 1489
|||.||.|||.||||..|.|||||.|||...|||||.|..||.||.||..
RBAM_026990__ 1437 TGTGACAAAAGCAAAGCTCATTACGGACAATATGTTCGTTGCCTGCGCGA 1486
BSNT_04353___ 1490 GGGCAATCGCAGGTATGGTCAATGTCGGGGTGCCTGGCGCGCCGATGCTT 1539
..||.|||||.||||||||..|.|||||...|||.||.||||||||||||
RBAM_026990__ 1487 ATGCCATCGCCGGTATGGTGGACGTCGGCAAGCCGGGTGCGCCGATGCTT 1536
BSNT_04353___ 1540 CCGAAAGTTGAAGATTTGCGCACTGTTTCGGCAACCGTTGCGGTTGAAGT 1589
||||||||.||.|||.|..|.||.||.||||||||.||.|||||.|..||
RBAM_026990__ 1537 CCGAAAGTGGAGGATCTCAGGACGGTATCGGCAACTGTGGCGGTAGCTGT 1586
BSNT_04353___ 1590 CGCAAAAACCGCGATGAAGGAAGGCGTTGCTACGGAA---GAGCCAGAAG 1636
.||||||.|.|||||..||||.||.||.| ||||| ||.||.||.|
RBAM_026990__ 1587 AGCAAAAGCTGCGATTCAGGACGGTGTAG---CGGAAACGGAACCCGAGG 1633
BSNT_04353___ 1637 ACATTATACAGGCAGTGCAGGATGCGATGTGGTATCCGGTATACAAACCG 1686
|..|.||.||.||.||||||||.|||||||||.|.||.|||||.||||..
RBAM_026990__ 1634 ATCTGATCCAAGCGGTGCAGGACGCGATGTGGCACCCCGTATATAAACGA 1683
BSNT_04353___ 1687 ATTCGCGCGATATAA 1701
|||||..||||.|||
RBAM_026990__ 1684 ATTCGGCCGATGTAA 1698
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