Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_03917 and RBAM_026720

See Amino acid alignment / Visit BSNT_03917 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:26:12
# Commandline: needle
#    -asequence dna-align/BSNT_03917___yraA.1.9828.seq
#    -bsequence dna-align/RBAM_026720___yraA.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03917___yraA-RBAM_026720___yraA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03917___yraA-RBAM_026720___yraA.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03917___yraA
# 2: RBAM_026720___yraA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 511
# Identity:     413/511 (80.8%)
# Similarity:   413/511 (80.8%)
# Gaps:           2/511 ( 0.4%)
# Score: 1661.0
# 
#
#=======================================

BSNT_03917___      1 ATGAGCAAAAAAATTGCAGTTCTTGTTACAGACCAATTCGAAGACATCGA     50
                     ||||||||||||||.||||||||..|.|||||.|||||.||.||.||.||
RBAM_026720__      1 ATGAGCAAAAAAATCGCAGTTCTGATGACAGATCAATTTGAGGATATTGA     50

BSNT_03917___     51 ATATACAAGTCCGGTAAAAGCATACGAAGAAGCTGGCTACAGTGTTGTGG    100
                     |||||||||.||||...||||||...|||||||.|||.|||||||.|||.
RBAM_026720__     51 ATATACAAGCCCGGCGGAAGCATTTAAAGAAGCGGGCCACAGTGTGGTGA    100

BSNT_03917___    101 CTATCGATTTGGAAGCCGGCAAAGAAGTCACCGGTAAACATGGCGAGAAA    150
                     |.||.|||||||||||.||.||||||||.||.||.||.||.||.||||||
RBAM_026720__    101 CAATAGATTTGGAAGCAGGGAAAGAAGTAACGGGCAAGCACGGTGAGAAA    150

BSNT_03917___    151 GTAAAGATTGACAAAGCCATCTCTGATGTGGATG-CAAGTGACTTTGATG    199
                     ||||||||.||..||||.|||||.||.|..||.| |||| ||.||.||||
RBAM_026720__    151 GTAAAGATCGATCAAGCGATCTCAGACGCAGACGCCAAG-GAATTCGATG    199

BSNT_03917___    200 CACTTCTAATTCCTGGAGGATTCTCTCCGGATTTGCTTCGTGCAGATGAC    249
                     |..|..|.|||||.|||||.||.||.||||||.|.||.||.|.|||||||
RBAM_026720__    200 CGTTATTGATTCCCGGAGGCTTTTCACCGGATCTTCTGCGCGGAGATGAC    249

BSNT_03917___    250 CGTCCGGGTGAATTCGCAAAAGCATTTGTCGAAAACAAAAAACCTGTTTT    299
                     ||.||||||||||||.|.||||||||.||.|||||..|.|||||.|||||
RBAM_026720__    250 CGCCCGGGTGAATTCACTAAAGCATTCGTGGAAAATCAGAAACCCGTTTT    299

BSNT_03917___    300 CGCAATTTGCCACGGCCCGCAAGTACTGATTGATACGGATCTTCTAAAAG    349
                     |||.||.||||||||||||||..|.|||||||||||.||.|||||.||||
RBAM_026720__    300 CGCCATCTGCCACGGCCCGCAGCTGCTGATTGATACCGACCTTCTTAAAG    349

BSNT_03917___    350 GCAAAGATATCACAGGCTACCGCAGCATCCGCAAAGATTTAATCAATGCC    399
                     |.|||||||||||.||.|.||||||||||||||||||.||||||||||||
RBAM_026720__    350 GAAAAGATATCACGGGATTCCGCAGCATCCGCAAAGACTTAATCAATGCC    399

BSNT_03917___    400 GGTGCAAACTACAAAGATGCAGAAGTAGTCGTCAGCCACAACATTGTCAC    449
                     ||.|||.|.||.|||||||.||||||.|||||.|||||.|||||.||.||
RBAM_026720__    400 GGCGCACATTATAAAGATGAAGAAGTCGTCGTGAGCCATAACATCGTAAC    449

BSNT_03917___    450 AAGCAGAACACCTGATGATTTGGAAGCATTTAACCGCGAATCATTAAATT    499
                     |||||||||||||||.|||||||||||.|||||.||.||||||||.||..
RBAM_026720__    450 AAGCAGAACACCTGACGATTTGGAAGCCTTTAATCGTGAATCATTGAACC    499

BSNT_03917___    500 TGTTAAAATAA    510
                     ||.|.||||||
RBAM_026720__    500 TGCTGAAATAA    510


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