Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04309 and RBAM_026530
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:46
# Commandline: needle
# -asequence dna-align/BSNT_04309___braB.1.9828.seq
# -bsequence dna-align/RBAM_026530___braB.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04309___braB-RBAM_026530___braB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04309___braB-RBAM_026530___braB.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04309___braB
# 2: RBAM_026530___braB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1356
# Identity: 1055/1356 (77.8%)
# Similarity: 1055/1356 (77.8%)
# Gaps: 33/1356 ( 2.4%)
# Score: 4095.5
#
#
#=======================================
BSNT_04309___ 1 ATGAAACACTCACTGCCTGTCAAAGATACCATTATTATTGGTTTCATGCT 50
||||||||||||||.|||||||||||||||.|||||||.|||||||||||
RBAM_026530__ 1 ATGAAACACTCACTACCTGTCAAAGATACCGTTATTATCGGTTTCATGCT 50
BSNT_04309___ 51 ATTTGCGTTATTCTTTGGAGCAGGAAATATGATCTATCCGCCGGAACTTG 100
.||.||..|.||.||.||.||||||||||||||.|||||||||||.||.|
RBAM_026530__ 51 TTTCGCACTTTTTTTCGGGGCAGGAAATATGATATATCCGCCGGAGCTCG 100
BSNT_04309___ 101 GACAAGCAGCCGGACACAACGTCTGGAAGGCCATCGGCGGATTTTTACTG 150
|.|||||.||.||.||.||.||||||||.||.||.|||||.||.||||||
RBAM_026530__ 101 GGCAAGCGGCGGGGCATAATGTCTGGAAAGCGATGGGCGGTTTCTTACTG 150
BSNT_04309___ 151 ACAGGGGTAGGCCTGCCGCTTCTCGGCATTATCGCCATCGCATTAACCGG 200
||.||.|||||.|||||||||.|.||.||||||||||||||||||||.||
RBAM_026530__ 151 ACCGGCGTAGGTCTGCCGCTTTTGGGTATTATCGCCATCGCATTAACGGG 200
BSNT_04309___ 201 TAAGGACGCTAAAGGCCTTGCTGACAAAGCGCACCCTGTTTTCGGCACAA 250
.||.|||||.|||||.|||||.||.|||||.||.||.||.|||||.||.|
RBAM_026530__ 201 CAAAGACGCAAAAGGGCTTGCCGATAAAGCTCATCCGGTATTCGGGACTA 250
BSNT_04309___ 251 TCTTTACTGTCGTGCTTTATTTATCAATCGGACCATTATTCGCCATCCCG 300
|.||.||.||.||||||||||||||||||||.||..|.|||||.||.|||
RBAM_026530__ 251 TTTTCACCGTTGTGCTTTATTTATCAATCGGGCCGCTTTTCGCGATTCCG 300
BSNT_04309___ 301 AGAACAGGAACTGTTTCATATGAAATTGGCGCTGTTCCGTTTTTGACTGG 350
|||||.|||||.||||||||||||||.||.||.|||||||||||.|..||
RBAM_026530__ 301 AGAACCGGAACCGTTTCATATGAAATCGGTGCAGTTCCGTTTTTAAGCGG 350
BSNT_04309___ 351 CGTACCAGAAAGACTTTCTTTATTAATATTTACAC--TTATCTTTTTCGG 398
|.|.||.||||||.|.|||||||| |.|||.||| |.||||||||...
RBAM_026530__ 351 CATTCCGGAAAGATTATCTTTATT--TGTTTTCACGTTGATCTTTTTTTC 398
BSNT_04309___ 399 CGTTACGTACTATTTAGCGTTAAACCCATCCAAGGTTGTCGATCGAGTCG 448
..|||||||.||||||||..|.||.||.|||||..|.||.||..||||||
RBAM_026530__ 399 TATTACGTATTATTTAGCTCTTAATCCTTCCAAAATCGTTGACAGAGTCG 448
BSNT_04309___ 449 GAAAAATTCTGACTCCCATCAAATTCACGATTATTTTAATCATTGTTCTC 498
||||.|||.|||||||.||.||||||...||||||||||||||.||..|.
RBAM_026530__ 449 GAAAGATTTTGACTCCTATTAAATTCGGTATTATTTTAATCATCGTCGTA 498
BSNT_04309___ 499 AAAGCCATCTTCACGCCGATGGGCGGATTGGGCGCCGTGACA-GAAGCAT 547
||||||||..||||.||||||||||||.|||||||||| ||| .|.||||
RBAM_026530__ 499 AAAGCCATTGTCACTCCGATGGGCGGACTGGGCGCCGT-ACATCAGGCAT 547
BSNT_04309___ 548 ATAAAGGAACACCGGTTTTTAAAGGATTTTTAGAAGGCTATAAAACAATG 597
||...|||||.|||||.||.|||||||||||.||||||||||||||||||
RBAM_026530__ 548 ATTCCGGAACGCCGGTGTTCAAAGGATTTTTGGAAGGCTATAAAACAATG 597
BSNT_04309___ 598 GACGCACTTGCTTCAATTGTATTTGGCGTTGTCGTTGTAAATGCTGTAAA 647
|||||.||.||.||.||.||.||.|||||.||.||.||.||.|||||.||
RBAM_026530__ 598 GACGCGCTCGCCTCGATCGTCTTCGGCGTCGTTGTCGTCAACGCTGTTAA 647
BSNT_04309___ 648 AAGCAAAGGCGTTACACAGTCTAAAGCTCTTGCTGCAGCCTGCATTAAAG 697
|||||..|||||.||.|||..||||||.||.||.||.||.||.|||||||
RBAM_026530__ 648 AAGCAGGGGCGTCACCCAGCGTAAAGCGCTCGCCGCCGCTTGTATTAAAG 697
BSNT_04309___ 698 CAGGTGTGATTGCAGCTTTAGGCCTGACTTTCATTTATGTATCCCTTGCT 747
|.|||.||||||||||...|||..||||.|||||||||.||||..|.||.
RBAM_026530__ 698 CGGGTCTGATTGCAGCGGCAGGTTTGACATTCATTTATTTATCTTTGGCC 747
BSNT_04309___ 748 TATTTAGGTGCAACAAGCACAAATGCCATCGGTCCTGTTGGTGAAGGAGC 797
|||||.||.||.||||||||..|.||..|.||.||..|.||.|||||.||
RBAM_026530__ 748 TATTTGGGAGCGACAAGCACGGACGCTGTGGGGCCGCTCGGCGAAGGCGC 797
BSNT_04309___ 798 TAAAATTTTATCTGCGTCTTCCCATTATTTATTCGGGTCATTGGGCAACA 847
.||.||||||||.||.||.||..||||..|.|||||.|||.||||.||||
RBAM_026530__ 798 AAAGATTTTATCAGCTTCATCTGATTACCTGTTCGGTTCACTGGGAAACA 847
BSNT_04309___ 848 TCGTACTCGGAGCAGCGATTACAGTCGCATGTTTAACAACAAGCATCGGC 897
||||.|||||..|.||.||.||.||.||.||||||||.|||||||||||.
RBAM_026530__ 848 TCGTTCTCGGCTCTGCCATCACCGTTGCGTGTTTAACGACAAGCATCGGG 897
BSNT_04309___ 898 CTTGTCACATCTTGCGGCCAATATTTTTCAAAACTTATTCCGGCATTATC 947
||||||||||||||||||.||||||||||||||.|.|||||.||.|||||
RBAM_026530__ 898 CTTGTCACATCTTGCGGCGAATATTTTTCAAAATTGATTCCCGCTTTATC 947
BSNT_04309___ 948 ATATAAAATTGTCGTTACGATTGTCACGTTATTCAGCTTGATCATTGCGA 997
|||.|||||.||.|||||||||||||||.|.|||||..||...|||.|.|
RBAM_026530__ 948 ATACAAAATGGTGGTTACGATTGTCACGCTGTTCAGTCTGGCGATTTCAA 997
BSNT_04309___ 998 ATTTCGGACTCGCGCAAATTATCGCGTTTTCTGTTCCTATTTTATCAGCT 1047
||||||||||.||..|.|||||.||.|||||.|||||||||||||||||.
RBAM_026530__ 998 ATTTCGGACTTGCTGAGATTATTGCATTTTCAGTTCCTATTTTATCAGCC 1047
BSNT_04309___ 1048 ATCTATCCGCTTGCCATTGTCATTATCGTTCTTTCCTTCATCGATAAGAT 1097
||.||.|||||.||.||||||||||||||.||||||||.||.|||||.||
RBAM_026530__ 1048 ATTTACCCGCTGGCGATTGTCATTATCGTCCTTTCCTTTATTGATAAAAT 1097
BSNT_04309___ 1098 CTTTAAAGAAAGACGCGAAGTGTACATCGCTTGCTTGATCGGTACAGGAC 1147
||||||.||||||||||||||.||.|||||.|||.|||||||.|||||.|
RBAM_026530__ 1098 CTTTAAGGAAAGACGCGAAGTCTATATCGCCTGCCTGATCGGAACAGGGC 1147
BSNT_04309___ 1148 TTTTCAGTATTTTAGACGGTATCAAAGCAGCCGGTTTTTCACTTGGATCT 1197
|.||||||||.||.||||||.|.||.|||||.||..||.|.||.|||||.
RBAM_026530__ 1148 TGTTCAGTATCTTGGACGGTTTGAAGGCAGCAGGCATTCCGCTCGGATCA 1197
BSNT_04309___ 1198 TTAGATGTGTTTC-TAAATGCGAATCTTCCTCTTTACAGCCTCGGCATCG 1246
|||||| |..||| ||||.||.||||||||.|||||||||.|.||.||||
RBAM_026530__ 1198 TTAGAT-TCATTCTTAAACGCAAATCTTCCGCTTTACAGCATGGGAATCG 1246
BSNT_04309___ 1247 GCTGGGTGCTTCCAGGAATCGTCGGAGCGGTTATCGGCTATGTGC----T 1292
|||||||||||||.||.||.|.|||||||.|.|||||| ||| |
RBAM_026530__ 1247 GCTGGGTGCTTCCGGGCATTGCCGGAGCGATCATCGGC----TGCATTAT 1292
BSNT_04309___ 1293 GACCTTATTCATCGGACCATCCAAACAGCTT--AATGAAATAAGTTAA-- 1338
.||.||.||.|.|.|.||..||| | |||.||||||...||
RBAM_026530__ 1293 CACGTTTTTTACCAGCCCGCCCA-------TCGAATTAAATAAAGCAAAA 1335
BSNT_04309___ 1338 ------ 1338
RBAM_026530__ 1336 TCGTAA 1341
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