Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04308 and RBAM_026520
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:46
# Commandline: needle
# -asequence dna-align/BSNT_04308___nifZ.1.9828.seq
# -bsequence dna-align/RBAM_026520___nifZ.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04308___nifZ-RBAM_026520___nifZ.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04308___nifZ-RBAM_026520___nifZ.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04308___nifZ
# 2: RBAM_026520___nifZ
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1176
# Identity: 857/1176 (72.9%)
# Similarity: 857/1176 (72.9%)
# Gaps: 60/1176 ( 5.1%)
# Score: 3029.0
#
#
#=======================================
BSNT_04308___ 1 ATGATATATTTAGATAATAGTTCAACGACGAAGCCTTACGATGAAGTCTT 50
||||||||||||||.||.||.||||||||..||||.||.||.||.||.||
RBAM_026520__ 1 ATGATATATTTAGACAACAGCTCAACGACCGAGCCGTATGAAGAGGTATT 50
BSNT_04308___ 51 GAACGTATATGAACAGACAAGCAGCCGATACTTTGGCAATCCTTCATCTT 100
|.|.||.||..|||||||.||||||||.||.||.|||||||||||.|||.
RBAM_026520__ 51 GGATGTGTACAAACAGACGAGCAGCCGTTATTTCGGCAATCCTTCGTCTC 100
BSNT_04308___ 101 TGCACCGATATGGAGCCGAAACGGAACAGCTGCTTCAAGCAGCCAAAAAT 150
|||||||.|..|||.|.||.|||||||||||.|||.||||.|||....|.
RBAM_026520__ 101 TGCACCGGTTAGGAACTGAGACGGAACAGCTCCTTGAAGCGGCCGCTCAG 150
BSNT_04308___ 151 CAAATCAAAAGGTCCTTAGGCCTAAAAAAATATGATATTGTATTTACATC 200
|||||.||||...||||..|..|||||||.||||||||||||||||||||
RBAM_026520__ 151 CAAATAAAAAAAACCTTGCGTTTAAAAAATTATGATATTGTATTTACATC 200
BSNT_04308___ 201 AGGCGCCACAGAAGCCAATAATGCGGCTTTAAAAGGAGCGGCTTTGTCAA 250
||||||.||.|||||.|||||.||.||.|||||.|||||.||.|.|.|||
RBAM_026520__ 201 AGGCGCGACTGAAGCGAATAACGCTGCGTTAAAGGGAGCAGCCTGGGCAA 250
BSNT_04308___ 251 AGATAAAAACAGGCAAACATATCATTGCCACTTCTATTGAACATCCATCC 300
|.||.|..|.|||.|.||||||||||||..|..|.|||||.|||||.||.
RBAM_026520__ 251 ACATGAGTAAAGGGAGACATATCATTGCTTCGGCGATTGAGCATCCTTCT 300
BSNT_04308___ 301 GTTACGGAATCGTTAGAACAGCTGAAAGAGTTGTTCGGGTTTGATATCAC 350
||.|||||..||.|.||.|||||||.||||.|||||||.|||||..||||
RBAM_026520__ 301 GTGACGGAGACGCTTGATCAGCTGACAGAGCTGTTCGGCTTTGAAGTCAC 350
BSNT_04308___ 351 TTATCTTTCTGTGAATGAAGACGGATTTGTTTCTATTG-AAGATCTAAAA 399
.||||||.|.|...||.||.||||.||.||.||| ||| ||||..|.|||
RBAM_026520__ 351 ATATCTTCCGGCCGATCAAAACGGCTTCGTCTCT-TTGAAAGACGTCAAA 399
BSNT_04308___ 400 GCAGCCATCCGTCCCGATACCGTGCTTGTCAGCATGATGCATGTGAACAA 449
.|.||.|||.|.||.|||||..|..|.||||||.|.||||||||.||.||
RBAM_026520__ 400 TCGGCTATCAGGCCGGATACGATAATCGTCAGCGTCATGCATGTCAATAA 449
BSNT_04308___ 450 TGAAGTCGGTTCCGTGCAGCC-------GATTGAAGCGGCAGGGGAAGTG 492
.||||||||.|||.|.||||| || ||.||||.|| .|.
RBAM_026520__ 450 CGAAGTCGGCTCCATTCAGCCCGTAAAGGA---AATCGGCGGG----TTT 492
BSNT_04308___ 493 CTGAAGAAGCACCCGAACATTTTGTTCCACGTCGATTATGTGCAGGGCAT 542
.|||||.||||||.|||.|||.||||.||.||.|||.|||||||||||||
RBAM_026520__ 493 TTGAAGCAGCACCGGAATATTCTGTTTCATGTTGATCATGTGCAGGGCAT 542
BSNT_04308___ 543 CTATAAAGTGCCCTTGGCAATTGAAAAGGCCGGCATTGATCTATGTTCAA 592
..|||||||.||..||.|.||.|||.|.||.||||||||.||.||..|..
RBAM_026520__ 543 TCATAAAGTTCCGCTGTCTATAGAAGAAGCGGGCATTGACCTTTGCACCG 592
BSNT_04308___ 593 TTTCGGGGCATAAATTTCACGGCCTAAAGGGGACAGGCGCACTTATTGTA 642
||||.||||||||.|||||||||.||||.||||||||.||.|||||.||.
RBAM_026520__ 593 TTTCAGGGCATAAGTTTCACGGCTTAAAAGGGACAGGAGCGCTTATCGTC 642
BSNT_04308___ 643 AAAGAGGGAACACGCCTTATTCCGCTCATAACGGGAGGCTCTCAGCAAAA 692
|||.|.|||||.||.||.||||||||.||.|||||.|||||.||||||||
RBAM_026520__ 643 AAAAAAGGAACGCGGCTCATTCCGCTTATCACGGGCGGCTCGCAGCAAAA 692
BSNT_04308___ 693 AGGCATACGGGCCGGAACAGAACATACTGCTGGTGCGGTTTCGCTTGCCA 742
||||.|.||.||||||||.|||||.||.||.||.||.|||||.|||||.|
RBAM_026520__ 693 AGGCGTCCGAGCCGGAACGGAACACACGGCAGGCGCCGTTTCCCTTGCGA 742
BSNT_04308___ 743 AGGCCATTAATCTTGCCTCTGC-TGATTTTGACACACGGCTT-------- 783
|.||.||.||||||.||.| || |||..|..||...||||||
RBAM_026520__ 743 AAGCGATCAATCTTTCCGC-GCGTGACATGAACGAGCGGCTTTCTTCCGT 791
BSNT_04308___ 784 -GACACGATGACTGCCGCAAAGGAAT-TGTTTATGAAAAGGCTGAGTGAA 831
|| |.||||| |.|||| .|.|.|||.||||||||||.|..
RBAM_026520__ 792 GGA------GGCTGCC----AAGAATGCGCTCATGGAAAGGCTGAGCGGG 831
BSNT_04308___ 832 ATTGAGGGCGTCGTTATCAACACGC---CTCAAATGAATAGCGCGCCGCA 878
|..||.||.|||||.||||||||.| ||.|| ||.|||||||||||
RBAM_026520__ 832 ACGGACGGGGTCGTCATCAACACCCCCGCTGAA---AACAGCGCGCCGCA 878
BSNT_04308___ 879 CATTATTAATTTCTCTGTACCGGGGATTAAAGCGGAAGTGCTTTTACACA 928
.||.||||||||.||.||.|||||..|.||.|||||||||||.||.||||
RBAM_026520__ 879 TATCATTAATTTTTCCGTTCCGGGCGTGAAGGCGGAAGTGCTGTTGCACA 928
BSNT_04308___ 929 TGCTTGAGGAACA--GGATATATTCGTCTCCACAACATCGGCTTGCTCGG 976
|||||||||||.| |.|||||| |||||||||||.|||||.||.||||
RBAM_026520__ 929 TGCTTGAGGAAAAAGGAATATAT--GTCTCCACAACCTCGGCATGTTCGG 976
BSNT_04308___ 977 CAAAAGAACATAAGCCCAGCAAGGTTCTCTTAGAGATGGGCAAAGGAGAG 1026
|||.|||.||.||.||.|||...||||||.|..|||||...|||||.||.
RBAM_026520__ 977 CAAGAGAGCACAAACCGAGCCGTGTTCTCCTGCAGATGAATAAAGGCGAA 1026
BSNT_04308___ 1027 CAGATTGCCGGAAGCAGCATCAGAATCAGTTTAAATTACAGCCAGACAAG 1076
||||||||...|||||||||.|||.||||..|.||.|.||||||.|| .|
RBAM_026520__ 1027 CAGATTGCATCAAGCAGCATAAGAGTCAGCCTGAACTTCAGCCATAC-GG 1075
BSNT_04308___ 1077 CGATGTGGCA-----GAACCGTTTATGAACGCGCTTCGT-CCTGGTATCA 1120
| ||.|| ||.|||||||||..||||| |.|| ||.|.|.|..
RBAM_026520__ 1076 C----TGACATCACGGAGCCGTTTATGGCCGCGC-TGGTGCCGGCTGTTC 1120
BSNT_04308___ 1121 AAAAATTAAGGGAAATGATGAGGTAG 1146
|||||.|||...||||||||||||||
RBAM_026520__ 1121 AAAAACTAAAAAAAATGATGAGGTAG 1146
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