Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04307 and RBAM_026510
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:46
# Commandline: needle
# -asequence dna-align/BSNT_04307.1.9828.seq
# -bsequence dna-align/RBAM_026510___thiI.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04307-RBAM_026510___thiI.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04307-RBAM_026510___thiI.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04307
# 2: RBAM_026510___thiI
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1232
# Identity: 952/1232 (77.3%)
# Similarity: 952/1232 (77.3%)
# Gaps: 52/1232 ( 4.2%)
# Score: 3660.5
#
#
#=======================================
BSNT_04307 1 ATGAATTACGATCATATATTAATTCGTTTTGGGGAAATTTCGACCAAAGG 50
|||||||||||||||||.|||||.||||||||.|||||.||.||.|||||
RBAM_026510__ 1 ATGAATTACGATCATATTTTAATCCGTTTTGGTGAAATATCCACAAAAGG 50
BSNT_04307 51 CAAAAACAGAAAAAGCTTTATTGAGCGCTTAAAACAAAACATCAGACTCG 100
.|||||||||...||.||||||||..|.||||||||.||.|||.|.||.|
RBAM_026510__ 51 AAAAAACAGACGCAGTTTTATTGAAAGATTAAAACAGAATATCCGCCTGG 100
BSNT_04307 101 TTTTGAAAGACTATCCGAATTTAAAATACTTTTCCAACAGGGATCGTATG 150
|.||.||.||.|||...||..|||||||||||||.|||.||||.||.|||
RBAM_026510__ 101 TATTAAAGGATTATAAAAAAGTAAAATACTTTTCAAACCGGGACCGGATG 150
BSNT_04307 151 ACGATTACATTAAATGGAGAGGATCCTGAGGCTCTTT-TTCCTCATTTAA 199
.|.||||||.|.||||||||..|.||.||||...||| |||||.| ||||
RBAM_026510__ 151 TCAATTACACTTAATGGAGAAAACCCGGAGGAAATTTGTTCCTTA-TTAA 199
BSNT_04307 200 AGCAAGTGTTTGGGATTCAAAGCTTCAGCCTGGCAATTAAGTGTGACAGC 249
||.|..|.||.||.|||||||||||.||.||.||||||||.||.||.|||
RBAM_026510__ 200 AGAATATATTCGGCATTCAAAGCTTTAGTCTCGCAATTAAATGCGAAAGC 249
BSNT_04307 250 CGCCTTGATGATATTAA------GGC---AACCGCACTA-AAGGCTATCA 289
...||.||.||.||||| ||| |.||||..|| |||||
RBAM_026510__ 250 AAGCTGGAAGACATTAAAAAAACGGCTTTAGCCGCGATAGAAGGC----- 294
BSNT_04307 290 AAGATCAGTATAAACCAGGTGATACGTTTAAAGTCGCGACAAAGAGAGCG 339
.|.||||||||.||..||||||||||.||||.|||.||..|.||.
RBAM_026510__ 295 -----GAATATAAACCGGGGAATACGTTTAAGGTCGAGACCAAACGGGCT 339
BSNT_04307 340 TATAAGCAATTTGAATTAGATACAAACCAAATGAACGCTGAAATCGGCGG 389
||.||.||.||||||||||||||.||....||||||||||||||||||||
RBAM_026510__ 340 TACAAACAGTTTGAATTAGATACGAATGCGATGAACGCTGAAATCGGCGG 389
BSNT_04307 390 CCATATTTTGCGAAATACAGAAGGATTGACGGTCGATGTTCGCAAC--CC 437
|||.||||||..|||.||.||.|||||.||.|||||||| |.||| ||
RBAM_026510__ 390 CCACATTTTGAAAAACACGGATGGATTAACCGTCGATGT--GAAACATCC 437
BSNT_04307 438 AGACATCCCGCTCAGAATCGAAATCAGGGAAGAAGCAACATTTTTGACAA 487
.||.||.|||||..|.||.|||||||||||.|||||.|||||..||||.|
RBAM_026510__ 438 CGATATTCCGCTTCGGATTGAAATCAGGGAGGAAGCGACATTCCTGACTA 487
BSNT_04307 488 TTCGTGATGAAAAAGGTGCAGGCGGGTTGCCAGTTGGTTCAGCAGGAAAA 537
|||||.|.||||||||.||.||.||..|.||.||.|||||.||.||.|||
RBAM_026510__ 488 TTCGTAACGAAAAAGGCGCCGGAGGCCTTCCTGTCGGTTCCGCGGGTAAA 537
BSNT_04307 538 GCGATGCTGATGCTTTCTGGCGGTTTTGACAGCCCTGTTGCCGGTTTTTA 587
|||||||||||||||||.||||||||||||||.||.||.|||||||||||
RBAM_026510__ 538 GCGATGCTGATGCTTTCCGGCGGTTTTGACAGTCCGGTCGCCGGTTTTTA 587
BSNT_04307 588 TGCGATGAAACGGGGCTTGTCGGTAGAAGCTGTTCATTTCTTCAGCCCGC 637
.||||||||||||||.||.||.||.|||||.||.|||||||||||.||||
RBAM_026510__ 588 CGCGATGAAACGGGGATTATCAGTTGAAGCGGTACATTTCTTCAGTCCGC 637
BSNT_04307 638 CATACACAAGCGAGCGCGCAAAGCAAAAGGTAATGGATCTGGCGAAATGT 687
|.||.||.||.||.||.||||||||.||.||.||||||||.|||..|||.
RBAM_026510__ 638 CGTATACGAGTGAACGGGCAAAGCAGAAAGTCATGGATCTCGCGGGATGC 687
BSNT_04307 688 CTGTCCCG--TTTTGGGGGAAGCATGACACTTCATATTGTTCCATTTACA 735
| ||.|| .||.||.||.||.||||||||||||||.||.||.||||||
RBAM_026510__ 688 C--TCGCGAAGTTCGGCGGCAGTATGACACTTCATATCGTGCCGTTTACA 735
BSNT_04307 736 AAAACGCAAGAGCTCATTCAAAAACAAATTCCTGAAAATTACACAATGAC 785
||.|||||.||.|||||.|||||||||||.||.||.||.||.||.|||||
RBAM_026510__ 736 AAGACGCAGGAACTCATCCAAAAACAAATCCCGGAGAACTATACGATGAC 785
BSNT_04307 786 GGCAACCCGCCGCCTCATGCTTCAGATCGCCGACAGAATCAGAGAA-AAG 834
|||.||.||.||.||.|||||.||.|||||.||||||||||||||| ||.
RBAM_026510__ 786 GGCGACGCGGCGTCTTATGCTGCAAATCGCGGACAGAATCAGAGAAGAAC 835
BSNT_04307 835 AGAAACGGGCTTGCCGTTATTACGGGAGAAAGCCTCGGTCAGGTAGCGAG 884
.|||| |.|||.||..|.||||||||||||||||||||.|||||||||||
RBAM_026510__ 836 GGAAA-GCGCTCGCGATCATTACGGGAGAAAGCCTCGGGCAGGTAGCGAG 884
BSNT_04307 885 CCAAACGCTTGAAAGCATGTATGCAATTAATGCGGTGACGTCAACACCGA 934
|||.||||||||||||||||||||.||.||||||||||||.||||.||||
RBAM_026510__ 885 CCAGACGCTTGAAAGCATGTATGCGATCAATGCGGTGACGGCAACGCCGA 934
BSNT_04307 935 TTTTGCGTCCGCTAATCGCCATGGACAAAACAGAAATCATCGAAAAATCA 984
|||||||.||..||||||..|||||||||||||||||||||||.||||||
RBAM_026510__ 935 TTTTGCGCCCTTTAATCGGAATGGACAAAACAGAAATCATCGAGAAATCA 984
BSNT_04307 985 CGGGAAATTGGCACATATGAGACAAGCATTCAGCCGTTTGAAGACTGCTG 1034
...|||||.|||||.|||||.||||||||||||||||||||.||||||||
RBAM_026510__ 985 AAAGAAATCGGCACTTATGAAACAAGCATTCAGCCGTTTGAGGACTGCTG 1034
BSNT_04307 1035 CACGATCTTTACACCGCCAAGCCCGAAAACACGCCCTAAAAAAGAGAAAA 1084
|||.||||||||.||||||||.||||||||||||||.||||||||.||||
RBAM_026510__ 1035 CACCATCTTTACGCCGCCAAGTCCGAAAACACGCCCGAAAAAAGAAAAAA 1084
BSNT_04307 1085 TTGAACACTTTGAAAGCTTTGTTGATTTCGAGCCGTATATTCAAGAAG-- 1132
|.||.|||||.||||||||.||||||||.||.|||...|||..|||.|
RBAM_026510__ 1085 TCGAGCACTTCGAAAGCTTCGTTGATTTTGAACCGCTGATTGCAGAGGCC 1134
BSNT_04307 1133 -----CGGTAGATAACATTGAGACAATGACCCTGTATAGC---GAACAAG 1174
||| |||.||.||.|| |.||||.|| | ||.||.|
RBAM_026510__ 1135 GCTGCCGG-------CATCGAAACCAT--CACTGTTTA-CTCGGAGCAGG 1174
BSNT_04307 1175 AAGCTAACGATAAATTCGCTGAACTCTTTTAA 1206
|||||.|||||||.||.||.|..||.||||||
RBAM_026510__ 1175 AAGCTCACGATAAGTTTGCCGGCCTGTTTTAA 1206
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