Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04297 and RBAM_026440
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:45
# Commandline: needle
# -asequence dna-align/BSNT_04297___ytfI.1.9828.seq
# -bsequence dna-align/RBAM_026440___ytfI.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04297___ytfI-RBAM_026440___ytfI.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04297___ytfI-RBAM_026440___ytfI.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04297___ytfI
# 2: RBAM_026440___ytfI
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 751
# Identity: 486/751 (64.7%)
# Similarity: 486/751 (64.7%)
# Gaps: 107/751 (14.2%)
# Score: 1547.5
#
#
#=======================================
BSNT_04297___ 1 ATGCTCCTAGAGGAAGTGAAGAATATGGTGTATGTACTGACAGC------ 44
||||..|||| |.| ||||
RBAM_026440__ 1 ------------------------ATGGGATATG--CCG-CAGCAGCTGT 23
BSNT_04297___ 45 CATTCTTATTCTCA--TAGGGATCGTACTGCTTCTCAGAATGAAAATCCA 92
.|||||.||||||| |.||..|.| |||||..|.||.|||||||||||
RBAM_026440__ 24 TATTCTCATTCTCATTTTGGCCTGG--CTGCTCATGAGGATGAAAATCCA 71
BSNT_04297___ 93 TGTCGCGCTGGAGTATCTTCATGCCGAT---GATAATGACAAATTGACCT 139
..|..|..|.||.|||||||| |||| |||||.||||||.||||.|
RBAM_026440__ 72 CCTGACTTTCGAATATCTTCA---CGATAAAGATAACGACAAACTGACGT 118
BSNT_04297___ 140 TGAAGATTACGGCGCTGTTTGGCCTTATAAGG----------ATCAAAAA 179
|.||.|| .|.|||||||||.|| ||.|||||
RBAM_026440__ 119 TTAAAAT----------CTCGGCCTTATACGGGCTGATCCGTATTAAAAA 158
BSNT_04297___ 180 AACAAT-CCCGGCGATTAAGGTGAACAAAGAAGACGGAACAGTGGATATC 228
|||..| ||||.| |||||.||.||||..|||||||...||.|.|||.||
RBAM_026440__ 159 AACGCTGCCCGTC-ATTAAAGTAAACAGCGAAGACGCGTCAATTGATGTC 207
BSNT_04297___ 229 AAACAAAAAACTGAATCCAAAATGA--------AAAAAAGCAGCGGAAAG 270
|||||.||.||..||||..|||||| ||||||| || |||
RBAM_026440__ 208 AAACAGAACACAAAATCAGAAATGAAAGGTCAGAAAAAAG-AG----AAG 252
BSNT_04297___ 271 AAAAAAATTACACAAAACGATGTGCAGCAAAGCATTAATAAAATCGAAAT 320
||||||||.|||.|..|.|||||..|.||.||||||.|.|.|||.|||||
RBAM_026440__ 253 AAAAAAATCACATATGAAGATGTCAAACAGAGCATTCACAGAATAGAAAT 302
BSNT_04297___ 321 GCTTTTGCATCAGGTC-ACCAGACTACGGAAAATCAGCGCGTCTTTTCTC 369
|.||.||||.||.||| ..|||| |.||..|||||..|||.||.|||||.
RBAM_026440__ 303 GATTCTGCACCAAGTCTTTCAGA-TGCGCCAAATCGCCGCTTCATTTCTT 351
BSNT_04297___ 370 GCGCATTTACATATCACAAAACTAGAATGGGTTACAGTAATCGGAATTCA 419
|||....|.|.|.|.||.||..|.||||||||.||.||.||||||||..|
RBAM_026440__ 352 GCGGGAGTCCGTGTTACGAAGTTCGAATGGGTGACGGTTATCGGAATAAA 401
BSNT_04297___ 420 GGACGCGGCAGTGACAGGTGTGTTAA------CAGGTGCTGTATGGGGTG 463
||||||.||.||.||.|| || |.||.|...|.||||..|
RBAM_026440__ 402 GGACGCCGCCGTTACGGG------AATCGCCGCCGGCGGATTGTGGGCCG 445
BSNT_04297___ 464 TGAAGGGCGGTATCGCAGCAATGCTCTACGACCACCTGGACTTTGTGAAT 513
|.|||||.||..|..|.||.|||||.||.||.||.|||...||..|..||
RBAM_026440__ 446 TAAAGGGAGGCCTTACGGCGATGCTGTATGATCATCTGCGTTTCATACAT 495
BSNT_04297___ 514 AAACCTGTCTATGAGGTGATCCCGTCGTTTCAAGTCCCTGTTTCCAAGAC 563
.||||.||.|..||.||.||.|||||.||||||||.||||..||||||||
RBAM_026440__ 496 GAACCGGTGTGCGAAGTCATTCCGTCTTTTCAAGTGCCTGCATCCAAGAC 545
BSNT_04297___ 564 CCATTTTCAGTGTATATTCTTTTTTCGCTTTGGACATGCTATGCTTGCAG 613
.|||||.||||||||||||||||||||.|||||||||..|||...|||||
RBAM_026440__ 546 GCATTTGCAGTGTATATTCTTTTTTCGTTTTGGACATCTTATAGGTGCAG 595
BSNT_04297___ 614 CTTTCAAATTCGTCAAATACGGACGGGA-------GCTATCCGTATTAAA 656
||||||||||..||||||||||.|||.| .|||| |.||..|||
RBAM_026440__ 596 CTTTCAAATTGCTCAAATACGGGCGGAACGGACTTTCTAT-CATACGAAA 644
BSNT_04297___ 657 GAAGAATCCG--TCGGCTAGAATGACTTCAAAGAATGATTCATCAGTTTA 704
|||..|.||| ||.|.|.| |||||||||||||||||||||||||
RBAM_026440__ 645 GAAACAGCCGGTTCCGGTTG-----CTTCAAAGAATGATTCATCAGTTTA 689
BSNT_04297___ 705 A 705
|
RBAM_026440__ 690 A 690
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