Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_04291 and RBAM_026400

See Amino acid alignment / Visit BSNT_04291 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:26:44
# Commandline: needle
#    -asequence dna-align/BSNT_04291___ackA.1.9828.seq
#    -bsequence dna-align/RBAM_026400___ackA.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04291___ackA-RBAM_026400___ackA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04291___ackA-RBAM_026400___ackA.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04291___ackA
# 2: RBAM_026400___ackA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1296
# Identity:    1009/1296 (77.9%)
# Similarity:  1009/1296 (77.9%)
# Gaps:         108/1296 ( 8.3%)
# Score: 4329.0
# 
#
#=======================================

BSNT_04291___      1 ATGTTTAAATGGAAAAGTCAGATATTTTTCGGAGAAGATGTTGATATTCA     50
                                                                       
RBAM_026400__      0 --------------------------------------------------      0

BSNT_04291___     51 CCGGGAAAAAAGTACGAAAAACGAAGTTGTTGATACAGAGTATAAAGGAG    100
                                                                       
RBAM_026400__      0 --------------------------------------------------      0

BSNT_04291___    101 CGTCAATCATGTCCAAAATTATTGCAATTAACGCAGGAAGCTCGTCTTTG    150
                             |||||.|||||||||||||||||||||||||||||.|||||.
RBAM_026400__      1 --------ATGTCTAAAATTATTGCAATTAACGCAGGAAGCTCATCTTTA     42

BSNT_04291___    151 AAATTTCAGCTTTTCGAAATGCCTTCAGAAACCGTTTTAACGAAGGGTTT    200
                     |||||||||.|.|||||||||||||||||||..||..||||.||.|||||
RBAM_026400__     43 AAATTTCAGTTATTCGAAATGCCTTCAGAAAAGGTGCTAACAAAAGGTTT     92

BSNT_04291___    201 AGTTGAACGAATCGGTATCGCCGACAGCGTATTCACAATTTCTGTGAACG    250
                     |||.|||||.||||||||||||||||||||.||||||||.|||||.||||
RBAM_026400__     93 AGTAGAACGGATCGGTATCGCCGACAGCGTTTTCACAATCTCTGTTAACG    142

BSNT_04291___    251 GCGAAAAAAATACAGAAGTAACTGATATTCCGGATCATGCGGTAGCTGTT    300
                     |||||||||||||||||||.||.||||||||||||||||||||.||.||.
RBAM_026400__    143 GCGAAAAAAATACAGAAGTGACAGATATTCCGGATCATGCGGTTGCGGTG    192

BSNT_04291___    301 AAAATGCTGCTGAATAAGTTAACGGAATTCGGCATTATTAAAGACTTGAA    350
                     ||.||||||||..|.|||.|.||.||||||||.|||||.||.||..|.||
RBAM_026400__    193 AAGATGCTGCTTCACAAGCTGACTGAATTCGGTATTATAAAGGATCTAAA    242

BSNT_04291___    351 TGAAATTGACGGAATTGGCCATCGTGTCGTTCACGGCGGAGAAAAATTCA    400
                     |||||||||||||||.|||||.|||||.||||||||||||||||||||||
RBAM_026400__    243 TGAAATTGACGGAATCGGCCACCGTGTGGTTCACGGCGGAGAAAAATTCA    292

BSNT_04291___    401 GCGATTCTGTTTTATTAACGGATGAAACCATTAAGGAAATCGAAGATATT    450
                     |||||||||||||..|.|||||||||||.||....||.||.|||||.|||
RBAM_026400__    293 GCGATTCTGTTTTGCTTACGGATGAAACAATCCGTGAGATTGAAGAGATT    342

BSNT_04291___    451 TCTGAATTGGCACCGCTTCACAATCCGGCAAATATCGTTGGAATTAAAGC    500
                     ||.|||.|.||.|||||||||||.|||||.||.|||||.||.||||||||
RBAM_026400__    343 TCAGAACTAGCGCCGCTTCACAACCCGGCTAACATCGTCGGCATTAAAGC    392

BSNT_04291___    501 GTTCAAAGAAGTGCTTCCAAATGTTCCTGCGGTAGCTGTATTTGATACGG    550
                     .||.||||||||||||||.|||||.||||||||.||.||.||||||||||
RBAM_026400__    393 CTTTAAAGAAGTGCTTCCGAATGTGCCTGCGGTTGCAGTGTTTGATACGG    442

BSNT_04291___    551 CATTCCACCAAACAATGCCTGAGCAGTCTTACCTGTACAGCCTGCCGTAT    600
                     |.|||||||||||.||||||||.||.|||||||||||||||||.|||||.
RBAM_026400__    443 CGTTCCACCAAACGATGCCTGAACAATCTTACCTGTACAGCCTACCGTAC    492

BSNT_04291___    601 GAATACTATGAAAAATTCGGCATCCGTAAATACGGCTTCCACGGCACTTC    650
                     ||||||||.||.||||.||||||.||.||||||||.|||||||||||.||
RBAM_026400__    493 GAATACTACGAGAAATACGGCATTCGCAAATACGGTTTCCACGGCACATC    542

BSNT_04291___    651 ACATAAATATGTAACTGAGCGTGCGGCAGAGCTTCTCGGCCGTCCGTTAA    700
                     .||||||||.||.||..||||.||.||.||||||||||||||.|||.|..
RBAM_026400__    543 TCATAAATACGTGACACAGCGCGCAGCTGAGCTTCTCGGCCGCCCGCTTG    592

BSNT_04291___    701 AAGACTTGCGCCTGATTTCCTGCCACCTTGGAAACGGAGCAAGTATTGCC    750
                     ||||.|||||.|||||||||||||||||.||.|||||.||||||||.||.
RBAM_026400__    593 AAGATTTGCGTCTGATTTCCTGCCACCTCGGTAACGGCGCAAGTATCGCG    642

BSNT_04291___    751 GCTGTTGAAGGCGGAAAATCTATTGACACATCCATGGGCTTTACGCCGCT    800
                     ||.||.||||||||||||||.|||||.||.||.||||||||.||.|||||
RBAM_026400__    643 GCGGTAGAAGGCGGAAAATCCATTGATACGTCAATGGGCTTCACACCGCT    692

BSNT_04291___    801 TGCCGGTGTAGCAATGGGCACACGCTCTGGAAACATCGACCCTGCCCTGA    850
                     |||.|||||.||.|||||.|||||.||.|||||||||||||||||..|||
RBAM_026400__    693 TGCGGGTGTTGCGATGGGAACACGTTCAGGAAACATCGACCCTGCATTGA    742

BSNT_04291___    851 TCCCATACATCATGGAGAAAACAGGCCAAACGGCTGACGAAGTACTGAAT    900
                     |.||.|||||.|||||.|||||.|..||.|||||.||.||||||.|.|||
RBAM_026400__    743 TTCCGTACATTATGGAAAAAACGGATCAGACGGCAGATGAAGTATTAAAT    792

BSNT_04291___    901 ACATTAAACAAAAAAAGCGGACTGCTCGGCATTTCCGGTTTCTCAAGCGA    950
                     ||.|||||.|||||.|||||||||||.|||.|.|||||||||||.|||||
RBAM_026400__    793 ACGTTAAATAAAAAGAGCGGACTGCTTGGCGTATCCGGTTTCTCCAGCGA    842

BSNT_04291___    951 TCTTCGTGACATCGTTGAAGCAACGAAAGAAGGAAATGAGCGCGCGGAAA   1000
                     .|||||.||.|||||.|||||..|.|||||||||||.||..|.|||||||
RBAM_026400__    843 CCTTCGCGATATCGTAGAAGCTTCAAAAGAAGGAAACGAAAGAGCGGAAA    892

BSNT_04291___   1001 CGGCTCTTGAAGTATTCGCAAGCAGAATCCACAAATACATCGGTTCTTAC   1050
                     |||||||||||||.||.||||||||||||||.||||||||||||||||||
RBAM_026400__    893 CGGCTCTTGAAGTGTTTGCAAGCAGAATCCATAAATACATCGGTTCTTAC    942

BSNT_04291___   1051 GCTGCAAGAATGAGCGGTGTCGATGCGATCATCTTTACTGCCGGTATCGG   1100
                     |||||.|||||||||||.||.||.|||||.||.||.|||||.||||||||
RBAM_026400__    943 GCTGCGAGAATGAGCGGCGTTGACGCGATTATTTTCACTGCGGGTATCGG    992

BSNT_04291___   1101 TGAAAACAGTGTGGAAGTCAGAGAACGCGTTCTGCGCGGTTTAGAATTCA   1150
                     |||||||||.||.|||||||||||||||||.||.|||||.||||||||||
RBAM_026400__    993 TGAAAACAGCGTTGAAGTCAGAGAACGCGTGCTTCGCGGCTTAGAATTCA   1042

BSNT_04291___   1151 TGGGCGTATACTGGGATCCTGCGCTTAATAACGTGCGCGGCGAGGAAGCT   1200
                     ||||.|||||.||||||||||||||.||.||||||||||||||||||||.
RBAM_026400__   1043 TGGGTGTATATTGGGATCCTGCGCTGAACAACGTGCGCGGCGAGGAAGCG   1092

BSNT_04291___   1201 TTCATCAGCTATCCGCATTCTCCAGTAAAAGTCATGATCATTCCGACTGA   1250
                     ||.||||||||.||.||.|||||.||.|||||||||||||||||||||||
RBAM_026400__   1093 TTTATCAGCTACCCTCACTCTCCTGTCAAAGTCATGATCATTCCGACTGA   1142

BSNT_04291___   1251 TGAAGAAGTCATGATTGCGCGCGACGTTGTTCGTTTAGCAAAATAA   1296
                     .|||||.||||||||.||.|||||||||||.||..|.|||.|.|||
RBAM_026400__   1143 CGAAGAGGTCATGATCGCACGCGACGTTGTCCGCCTTGCACAGTAA   1188


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