Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04276 and RBAM_026330
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:43
# Commandline: needle
# -asequence dna-align/BSNT_04276___ytoI.1.9828.seq
# -bsequence dna-align/RBAM_026330___ytoI.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04276___ytoI-RBAM_026330___ytoI.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04276___ytoI-RBAM_026330___ytoI.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04276___ytoI
# 2: RBAM_026330___ytoI
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1339
# Identity: 1070/1339 (79.9%)
# Similarity: 1070/1339 (79.9%)
# Gaps: 32/1339 ( 2.4%)
# Score: 4333.5
#
#
#=======================================
BSNT_04276___ 1 GTGAAAGGCTTGGCAACGAAGCATGAACAAATTTTAACGTATATCGATTC 50
||||||||.||||||||||||||..||.|.||.||.|||||
RBAM_026330__ 1 ---------TTGGCAACAAAGCATGAACAAATCCTATCATACATAGATTC 41
BSNT_04276___ 51 ACTGCCTGTCGGTGAAAAAATTTCTGTCCGAAGAATTGCAAAGGAAATGA 100
.||.||||||||||||||||||||.|||.||||||||||.||.|||||||
RBAM_026330__ 42 GCTTCCTGTCGGTGAAAAAATTTCGGTCAGAAGAATTGCGAAAGAAATGA 91
BSNT_04276___ 101 AAGTAAGCGAAGGAACCGCGTACAGAGCGATCAAGGAAGCAGAGAATAAA 150
||||.||.||||||||.||.||||||||.||.||||||||.||.||.|||
RBAM_026330__ 92 AAGTCAGTGAAGGAACGGCTTACAGAGCCATTAAGGAAGCCGAAAACAAA 141
BSNT_04276___ 151 GGGTTTGTCAGCACGATTGAACGTGTGGGCACAATCAGAATTGAACAAAA 200
||.||.||...|||.||||||||||||||.||.|||.|.||||||||.||
RBAM_026330__ 142 GGATTCGTTTCCACTATTGAACGTGTGGGGACCATCCGGATTGAACAGAA 191
BSNT_04276___ 201 GAAAAAAGAGAACATTGAAAAGCTTACCTATGCAGAGGTTGTAAATGTTA 250
|||||||||.||.|||||||||||.||.||.||.|||||.||.|||||.|
RBAM_026330__ 192 GAAAAAAGAAAATATTGAAAAGCTGACATACGCCGAGGTCGTCAATGTGA 241
BSNT_04276___ 251 TAGACGGACAAGTGCTCGGAGGCAGGGCAGGGCTCCATAAGACATTGAAT 300
|||||||.||.||||||||.||.|..||.||.||.|||||.||.||||||
RBAM_026330__ 242 TAGACGGCCAGGTGCTCGGCGGAAAAGCCGGTCTGCATAAAACGTTGAAT 291
BSNT_04276___ 301 AAATTCGTCATCGGCGCGATGGAGCTTGACGCGATGATGCGTTACACCGC 350
||.||.||.|||||||||||||||||||||||||||||||||||.||.||
RBAM_026330__ 292 AAGTTTGTGATCGGCGCGATGGAGCTTGACGCGATGATGCGTTATACGGC 341
BSNT_04276___ 351 AGCGGGGAATCTTTTGATTGTCGGAAACAGAATCAATGCACACAGGCAGG 400
.||||||||.||.||.||.|||||.|||.|||||||.||.|||.|.||||
RBAM_026330__ 342 GGCGGGGAACCTGTTAATCGTCGGGAACCGAATCAACGCCCACCGCCAGG 391
BSNT_04276___ 401 CGCTTGAAGCGGGCGCGGCCGTATTGGTGACCGGGGGCTTTAACACGGAT 450
|||||||||||||||||||.||.|||||.||.||.||.|||||.||.||.
RBAM_026330__ 392 CGCTTGAAGCGGGCGCGGCTGTTTTGGTAACGGGAGGGTTTAATACCGAC 441
BSNT_04276___ 451 GACAGCATTGTGCAGCTGGCAGATGAGCTTGAACTGCCGATTTTATCCAC 500
|||||||||.|..|||||||.|||..||||||.||.||||||.|.|||||
RBAM_026330__ 442 GACAGCATTATCGAGCTGGCCGATATGCTTGAGCTTCCGATTCTCTCCAC 491
BSNT_04276___ 501 GAGCTATGACACCTTTACAGTTGCCGCTATGATTAACCGGGCAATTTATG 550
||||||.||.||||||||.||.|||||.|||||.||||||||.||.||||
RBAM_026330__ 492 GAGCTACGATACCTTTACGGTAGCCGCGATGATCAACCGGGCGATCTATG 541
BSNT_04276___ 551 ACCAGCTGATCAAAAAAGAAATTGTTTTGGTGGAGGACATCCTAACACCT 600
|.|||||.||.||||||||.|||||..|.|||||.|||||..|.||.||.
RBAM_026330__ 542 ATCAGCTCATAAAAAAAGAGATTGTGCTCGTGGAAGACATTTTGACGCCC 591
BSNT_04276___ 601 GCTGACCGCACGGTATATCTTTCGCCTAAGGATAAACTTGAAAAATGGTA 650
||.||.||.||.||....||.||.|||||||||||.||.||.||||||||
RBAM_026330__ 592 GCAGATCGGACAGTGACGCTGTCCCCTAAGGATAAGCTGGAGAAATGGTA 641
BSNT_04276___ 651 TGAGAAAAATTTTGAAACGGGGCACGGACGCTTCCCGGTTGTCGACGATC 700
.||.|||||.|.||||||.||.|||||.||||||||||||.||||..|.|
RBAM_026330__ 642 CGAAAAAAACTATGAAACCGGACACGGCCGCTTCCCGGTTATCGATCAGC 691
BSNT_04276___ 701 AAATGAAAATCCATGGCATTCTGACATCAAAAGATATTGCTGGCCATGAC 750
|.|||||||||||.||.||.||.|||||.||||||||.||.||.||||||
RBAM_026330__ 692 AGATGAAAATCCACGGAATCCTCACATCGAAAGATATCGCGGGGCATGAC 741
BSNT_04276___ 751 CG--AAATGCATCTATAGAAAAAGTCATGACCAAAAATCCCGTCACGGTT 798
|| .|.|.| |.||.||||||||.|||||||||||.||.||||||||.
RBAM_026330__ 742 CGGTCAGTTC--CGATTGAAAAAGTAATGACCAAAAACCCTGTCACGGTG 789
BSNT_04276___ 799 ATTGGGAAAACATCTGTCGCTTCAGCTGCGCAAATGATGGTATGGGAAGG 848
||.|||||||||||||||||.|||||.||.|||||||||||.||||||||
RBAM_026330__ 790 ATCGGGAAAACATCTGTCGCCTCAGCGGCTCAAATGATGGTTTGGGAAGG 839
BSNT_04276___ 849 GATCGAAGTGCTTCCCGTCACTGACGGCCACCAAAAACTCATCGGCATGA 898
.||.|||||||||||.||.||.|||||.||.||.|||||.|||||.||||
RBAM_026330__ 840 AATTGAAGTGCTTCCGGTGACAGACGGGCATCACAAACTGATCGGAATGA 889
BSNT_04276___ 899 TCAGCCGCCAAGACGTATTGAAAGCTCTTCAAATGATTCAAAAGCAGCCG 948
||||||||||.||.||.||.|||||.|||||||||.|||||||||||||.
RBAM_026330__ 890 TCAGCCGCCAGGATGTCTTAAAAGCGCTTCAAATGGTTCAAAAGCAGCCT 939
BSNT_04276___ 949 CAGGTCGGGGAGAAGCTTGATGATATCGTTTCAAGGGGGTTTAAAGATGA 998
|||||||||||.|||||.||||||||.|||||||||||.||||||||.||
RBAM_026330__ 940 CAGGTCGGGGAAAAGCTGGATGATATTGTTTCAAGGGGATTTAAAGAAGA 989
BSNT_04276___ 999 GGGTGATGATAAAGAAGATCAAA-------CGGTTTACGAGTATGAAGTC 1041
.|..||||| |||| |||||||..|.|||||||||
RBAM_026330__ 990 CGAAGATGA----------CAAAACGCCGGCGGTTTATCAATATGAAGTC 1029
BSNT_04276___ 1042 ACGCCGCAAATGACAAATCAGCTTGGAACCATTTCTTATGGCGTATTTAC 1091
||||||||||||||.||||||||.||.||.||||||||.||.||.|||||
RBAM_026330__ 1030 ACGCCGCAAATGACCAATCAGCTCGGCACGATTTCTTACGGGGTGTTTAC 1079
BSNT_04276___ 1092 GACCATTTTGACGCAAGCGGCAAACCGATTTTTGCGCTCGAAAAAACGCG 1141
|||.|||||.||.||.||.||.|.|||||||||.|||||....|||||||
RBAM_026330__ 1080 GACGATTTTAACCCAGGCCGCCAGCCGATTTTTACGCTCCCGCAAACGCG 1129
BSNT_04276___ 1142 GCGAACTCGTCATAGAGAGCATCACCATCTTCTTTTTGAAGCCTGTGCAG 1191
||||.||.|||||.||.|||||.||.||.|||||..|||||||.||.|||
RBAM_026330__ 1130 GCGAGCTGGTCATTGAAAGCATTACGATTTTCTTCCTGAAGCCCGTACAG 1179
BSNT_04276___ 1192 ATGGAATCAGTCATCGAAGTCAAACCTCGCATCTTGGAGGCTGGCAGAAA 1241
|||||.||.|||||.|||||.|||||.|||||.||.|||||.|||.|.||
RBAM_026330__ 1180 ATGGAGTCGGTCATTGAAGTGAAACCGCGCATTTTAGAGGCGGGCCGGAA 1229
BSNT_04276___ 1242 GTTTGGGAAAATGGAAGTGGAAGTG-CACAGCCAAGGTCATATCGTGTCT 1290
.||.||||||||||||||||||||| || ||||||.|....|||||.||.
RBAM_026330__ 1230 ATTCGGGAAAATGGAAGTGGAAGTGTCA-AGCCAAAGCGGCATCGTTTCA 1278
BSNT_04276___ 1291 AAAGCGATGCTGATGGTTCAGCTGATGGAAAGAAGCTAA 1329
|||||||||||.|||||.|||||||||||.|||||.|||
RBAM_026330__ 1279 AAAGCGATGCTCATGGTGCAGCTGATGGAGAGAAGTTAA 1317
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