Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_04276 and RBAM_026330

See Amino acid alignment / Visit BSNT_04276 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:26:43
# Commandline: needle
#    -asequence dna-align/BSNT_04276___ytoI.1.9828.seq
#    -bsequence dna-align/RBAM_026330___ytoI.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04276___ytoI-RBAM_026330___ytoI.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04276___ytoI-RBAM_026330___ytoI.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04276___ytoI
# 2: RBAM_026330___ytoI
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1339
# Identity:    1070/1339 (79.9%)
# Similarity:  1070/1339 (79.9%)
# Gaps:          32/1339 ( 2.4%)
# Score: 4333.5
# 
#
#=======================================

BSNT_04276___      1 GTGAAAGGCTTGGCAACGAAGCATGAACAAATTTTAACGTATATCGATTC     50
                              ||||||||.||||||||||||||..||.|.||.||.|||||
RBAM_026330__      1 ---------TTGGCAACAAAGCATGAACAAATCCTATCATACATAGATTC     41

BSNT_04276___     51 ACTGCCTGTCGGTGAAAAAATTTCTGTCCGAAGAATTGCAAAGGAAATGA    100
                     .||.||||||||||||||||||||.|||.||||||||||.||.|||||||
RBAM_026330__     42 GCTTCCTGTCGGTGAAAAAATTTCGGTCAGAAGAATTGCGAAAGAAATGA     91

BSNT_04276___    101 AAGTAAGCGAAGGAACCGCGTACAGAGCGATCAAGGAAGCAGAGAATAAA    150
                     ||||.||.||||||||.||.||||||||.||.||||||||.||.||.|||
RBAM_026330__     92 AAGTCAGTGAAGGAACGGCTTACAGAGCCATTAAGGAAGCCGAAAACAAA    141

BSNT_04276___    151 GGGTTTGTCAGCACGATTGAACGTGTGGGCACAATCAGAATTGAACAAAA    200
                     ||.||.||...|||.||||||||||||||.||.|||.|.||||||||.||
RBAM_026330__    142 GGATTCGTTTCCACTATTGAACGTGTGGGGACCATCCGGATTGAACAGAA    191

BSNT_04276___    201 GAAAAAAGAGAACATTGAAAAGCTTACCTATGCAGAGGTTGTAAATGTTA    250
                     |||||||||.||.|||||||||||.||.||.||.|||||.||.|||||.|
RBAM_026330__    192 GAAAAAAGAAAATATTGAAAAGCTGACATACGCCGAGGTCGTCAATGTGA    241

BSNT_04276___    251 TAGACGGACAAGTGCTCGGAGGCAGGGCAGGGCTCCATAAGACATTGAAT    300
                     |||||||.||.||||||||.||.|..||.||.||.|||||.||.||||||
RBAM_026330__    242 TAGACGGCCAGGTGCTCGGCGGAAAAGCCGGTCTGCATAAAACGTTGAAT    291

BSNT_04276___    301 AAATTCGTCATCGGCGCGATGGAGCTTGACGCGATGATGCGTTACACCGC    350
                     ||.||.||.|||||||||||||||||||||||||||||||||||.||.||
RBAM_026330__    292 AAGTTTGTGATCGGCGCGATGGAGCTTGACGCGATGATGCGTTATACGGC    341

BSNT_04276___    351 AGCGGGGAATCTTTTGATTGTCGGAAACAGAATCAATGCACACAGGCAGG    400
                     .||||||||.||.||.||.|||||.|||.|||||||.||.|||.|.||||
RBAM_026330__    342 GGCGGGGAACCTGTTAATCGTCGGGAACCGAATCAACGCCCACCGCCAGG    391

BSNT_04276___    401 CGCTTGAAGCGGGCGCGGCCGTATTGGTGACCGGGGGCTTTAACACGGAT    450
                     |||||||||||||||||||.||.|||||.||.||.||.|||||.||.||.
RBAM_026330__    392 CGCTTGAAGCGGGCGCGGCTGTTTTGGTAACGGGAGGGTTTAATACCGAC    441

BSNT_04276___    451 GACAGCATTGTGCAGCTGGCAGATGAGCTTGAACTGCCGATTTTATCCAC    500
                     |||||||||.|..|||||||.|||..||||||.||.||||||.|.|||||
RBAM_026330__    442 GACAGCATTATCGAGCTGGCCGATATGCTTGAGCTTCCGATTCTCTCCAC    491

BSNT_04276___    501 GAGCTATGACACCTTTACAGTTGCCGCTATGATTAACCGGGCAATTTATG    550
                     ||||||.||.||||||||.||.|||||.|||||.||||||||.||.||||
RBAM_026330__    492 GAGCTACGATACCTTTACGGTAGCCGCGATGATCAACCGGGCGATCTATG    541

BSNT_04276___    551 ACCAGCTGATCAAAAAAGAAATTGTTTTGGTGGAGGACATCCTAACACCT    600
                     |.|||||.||.||||||||.|||||..|.|||||.|||||..|.||.||.
RBAM_026330__    542 ATCAGCTCATAAAAAAAGAGATTGTGCTCGTGGAAGACATTTTGACGCCC    591

BSNT_04276___    601 GCTGACCGCACGGTATATCTTTCGCCTAAGGATAAACTTGAAAAATGGTA    650
                     ||.||.||.||.||....||.||.|||||||||||.||.||.||||||||
RBAM_026330__    592 GCAGATCGGACAGTGACGCTGTCCCCTAAGGATAAGCTGGAGAAATGGTA    641

BSNT_04276___    651 TGAGAAAAATTTTGAAACGGGGCACGGACGCTTCCCGGTTGTCGACGATC    700
                     .||.|||||.|.||||||.||.|||||.||||||||||||.||||..|.|
RBAM_026330__    642 CGAAAAAAACTATGAAACCGGACACGGCCGCTTCCCGGTTATCGATCAGC    691

BSNT_04276___    701 AAATGAAAATCCATGGCATTCTGACATCAAAAGATATTGCTGGCCATGAC    750
                     |.|||||||||||.||.||.||.|||||.||||||||.||.||.||||||
RBAM_026330__    692 AGATGAAAATCCACGGAATCCTCACATCGAAAGATATCGCGGGGCATGAC    741

BSNT_04276___    751 CG--AAATGCATCTATAGAAAAAGTCATGACCAAAAATCCCGTCACGGTT    798
                     ||  .|.|.|  |.||.||||||||.|||||||||||.||.||||||||.
RBAM_026330__    742 CGGTCAGTTC--CGATTGAAAAAGTAATGACCAAAAACCCTGTCACGGTG    789

BSNT_04276___    799 ATTGGGAAAACATCTGTCGCTTCAGCTGCGCAAATGATGGTATGGGAAGG    848
                     ||.|||||||||||||||||.|||||.||.|||||||||||.||||||||
RBAM_026330__    790 ATCGGGAAAACATCTGTCGCCTCAGCGGCTCAAATGATGGTTTGGGAAGG    839

BSNT_04276___    849 GATCGAAGTGCTTCCCGTCACTGACGGCCACCAAAAACTCATCGGCATGA    898
                     .||.|||||||||||.||.||.|||||.||.||.|||||.|||||.||||
RBAM_026330__    840 AATTGAAGTGCTTCCGGTGACAGACGGGCATCACAAACTGATCGGAATGA    889

BSNT_04276___    899 TCAGCCGCCAAGACGTATTGAAAGCTCTTCAAATGATTCAAAAGCAGCCG    948
                     ||||||||||.||.||.||.|||||.|||||||||.|||||||||||||.
RBAM_026330__    890 TCAGCCGCCAGGATGTCTTAAAAGCGCTTCAAATGGTTCAAAAGCAGCCT    939

BSNT_04276___    949 CAGGTCGGGGAGAAGCTTGATGATATCGTTTCAAGGGGGTTTAAAGATGA    998
                     |||||||||||.|||||.||||||||.|||||||||||.||||||||.||
RBAM_026330__    940 CAGGTCGGGGAAAAGCTGGATGATATTGTTTCAAGGGGATTTAAAGAAGA    989

BSNT_04276___    999 GGGTGATGATAAAGAAGATCAAA-------CGGTTTACGAGTATGAAGTC   1041
                     .|..|||||          ||||       |||||||..|.|||||||||
RBAM_026330__    990 CGAAGATGA----------CAAAACGCCGGCGGTTTATCAATATGAAGTC   1029

BSNT_04276___   1042 ACGCCGCAAATGACAAATCAGCTTGGAACCATTTCTTATGGCGTATTTAC   1091
                     ||||||||||||||.||||||||.||.||.||||||||.||.||.|||||
RBAM_026330__   1030 ACGCCGCAAATGACCAATCAGCTCGGCACGATTTCTTACGGGGTGTTTAC   1079

BSNT_04276___   1092 GACCATTTTGACGCAAGCGGCAAACCGATTTTTGCGCTCGAAAAAACGCG   1141
                     |||.|||||.||.||.||.||.|.|||||||||.|||||....|||||||
RBAM_026330__   1080 GACGATTTTAACCCAGGCCGCCAGCCGATTTTTACGCTCCCGCAAACGCG   1129

BSNT_04276___   1142 GCGAACTCGTCATAGAGAGCATCACCATCTTCTTTTTGAAGCCTGTGCAG   1191
                     ||||.||.|||||.||.|||||.||.||.|||||..|||||||.||.|||
RBAM_026330__   1130 GCGAGCTGGTCATTGAAAGCATTACGATTTTCTTCCTGAAGCCCGTACAG   1179

BSNT_04276___   1192 ATGGAATCAGTCATCGAAGTCAAACCTCGCATCTTGGAGGCTGGCAGAAA   1241
                     |||||.||.|||||.|||||.|||||.|||||.||.|||||.|||.|.||
RBAM_026330__   1180 ATGGAGTCGGTCATTGAAGTGAAACCGCGCATTTTAGAGGCGGGCCGGAA   1229

BSNT_04276___   1242 GTTTGGGAAAATGGAAGTGGAAGTG-CACAGCCAAGGTCATATCGTGTCT   1290
                     .||.||||||||||||||||||||| || ||||||.|....|||||.||.
RBAM_026330__   1230 ATTCGGGAAAATGGAAGTGGAAGTGTCA-AGCCAAAGCGGCATCGTTTCA   1278

BSNT_04276___   1291 AAAGCGATGCTGATGGTTCAGCTGATGGAAAGAAGCTAA   1329
                     |||||||||||.|||||.|||||||||||.|||||.|||
RBAM_026330__   1279 AAAGCGATGCTCATGGTGCAGCTGATGGAGAGAAGTTAA   1317


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