Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_04275 and RBAM_026320

See Amino acid alignment / Visit BSNT_04275 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:26:43
# Commandline: needle
#    -asequence dna-align/BSNT_04275___ytpI.1.9828.seq
#    -bsequence dna-align/RBAM_026320___ytpI.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04275___ytpI-RBAM_026320___ytpI.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04275___ytpI-RBAM_026320___ytpI.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04275___ytpI
# 2: RBAM_026320___ytpI
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 313
# Identity:     223/313 (71.2%)
# Similarity:   223/313 (71.2%)
# Gaps:          20/313 ( 6.4%)
# Score: 777.5
# 
#
#=======================================

BSNT_04275___      1 ATGCTGGTTCTTGTTTTTTTGATTGGGCTTTCCGCCTGCTTTTATGTGTA     50
                     |||||||||.||||||||.|.||.||||||||.|||||||||||.|||||
RBAM_026320__      1 ATGCTGGTTTTTGTTTTTCTCATCGGGCTTTCTGCCTGCTTTTACGTGTA     50

BSNT_04275___     51 CTATAAAGTAAAAGGCGT---------ACGGGCAAAGCCATCTTTGGCAA     91
                     .||.|||||||||||..|         ||||||   ||      ||| |.
RBAM_026320__     51 TTACAAAGTAAAAGGAATCCAGACGAAACGGGC---GC------TGG-AG     90

BSNT_04275___     92 AAGAAAT-ATGTTCAGCAAAATCAAGCATGGCCTTAGGGTCACTAGTCCT    140
                     |||.||| .|.|||.||.||||||||.|||||.|||||..|.||.||..|
RBAM_026320__     91 AAGGAATGTTTTTCGGCTAAATCAAGTATGGCATTAGGCGCGCTGGTGTT    140

BSNT_04275___    141 GTTCTACGGGCTCAACCAAATGATATTATTCCATTCAGTATTAACGTTAG    190
                     .||.|||||..|.|||||||||||..|.||.||.||.||..|.||..|.|
RBAM_026320__    141 TTTGTACGGAGTAAACCAAATGATTCTGTTTCACTCCGTCCTGACTCTGG    190

BSNT_04275___    191 TAATCGGCGGTATCTTTATCGTCATAGGAGCAGGAAGCGCTTGGGCAGGT    240
                     |.||||||||..||||.||..|.||.||||||||.|||||.|||||.||.
RBAM_026320__    191 TCATCGGCGGCGTCTTCATTTTAATCGGAGCAGGCAGCGCATGGGCCGGG    240

BSNT_04275___    241 TATAAAGCCTTCAGGCATTACAATCCCCTTCACGCCAAAGAAGCTGAAAG    290
                     ||||.|||||..|.||||||..|.|||.|.||.||.||.|||||.||.||
RBAM_026320__    241 TATAGAGCCTATAAGCATTATGAGCCCATCCATGCAAAGGAAGCGGAGAG    290

BSNT_04275___    291 AGATCACGCGTAA    303
                     .||.|||||.|||
RBAM_026320__    291 GGACCACGCATAA    303


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