Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_04253 and RBAM_026170

See Amino acid alignment / Visit BSNT_04253 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:26:41
# Commandline: needle
#    -asequence dna-align/BSNT_04253___icd.1.9828.seq
#    -bsequence dna-align/RBAM_026170___icd.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04253___icd-RBAM_026170___icd.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04253___icd-RBAM_026170___icd.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04253___icd
# 2: RBAM_026170___icd
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1283
# Identity:    1082/1283 (84.3%)
# Similarity:  1082/1283 (84.3%)
# Gaps:          22/1283 ( 1.7%)
# Score: 4616.5
# 
#
#=======================================

BSNT_04253___      1 GTGGCACAAGGTGAAAAAATTACAGTCTCTAACGGAGTATTAAACGTACC     50
                     |||.||||||||||||||||||||||||||||.|||||||||||||||||
RBAM_026170__      1 GTGTCACAAGGTGAAAAAATTACAGTCTCTAATGGAGTATTAAACGTACC     50

BSNT_04253___     51 AAACAACCCGATTATCCCATTTATCGAAGGAGACGGAACTGGTCCTGATA    100
                     |||.||.|||||||||||.|||||.|||||.|||||.||.||.|||||||
RBAM_026170__     51 AAATAATCCGATTATCCCGTTTATTGAAGGCGACGGCACAGGCCCTGATA    100

BSNT_04253___    101 TTTGGAACGCGGCTTCGAAGGTTTTAGAAGCAGCAGTAGAAAAAGCATAC    150
                     ||||||||||.|||||.||.||.||.|||||.||.||.|||||||||||.
RBAM_026170__    101 TTTGGAACGCCGCTTCTAAAGTATTGGAAGCCGCTGTTGAAAAAGCATAT    150

BSNT_04253___    151 AAAGGCGAAAAGAAAATTACATGGAAAGAAGTTTACGCCGGAGAAAAGGC    200
                     ||||||||.||.|||||.||.||||||||||||||.|||||.||||||||
RBAM_026170__    151 AAAGGCGAGAAAAAAATCACGTGGAAAGAAGTTTATGCCGGTGAAAAGGC    200

BSNT_04253___    201 TTATAATAAAACAGGTGAGTGGCTCCCTGCTGAAACATTAGATGTGATCC    250
                     ||||||||||||||||||||||||.|||||.|||||..|.||.|..|||.
RBAM_026170__    201 TTATAATAAAACAGGTGAGTGGCTTCCTGCCGAAACGCTGGAAGACATCA    250

BSNT_04253___    251 GCGAATATTTCATCGCGATTAAAGGCCCGTTAACGACACCTGTCGGCGGC    300
                     |.||.||.||||||||.||.|||||.||..|.||||||||.|||||||||
RBAM_026170__    251 GAGAGTACTTCATCGCCATCAAAGGTCCTCTGACGACACCGGTCGGCGGC    300

BSNT_04253___    301 GGTATCCGTTCTTTGAACGTAGCGCTCAGACAAGAGCTTGACCTATT--C    348
                     ||||||||||||.|||||||.|||||.|||||.||||||||..|.||  |
RBAM_026170__    301 GGTATCCGTTCTCTGAACGTGGCGCTGAGACAGGAGCTTGATTTGTTTAC    350

BSNT_04253___    349 GT--CTGCTTAAGACCTGTAAGATACTTTACTGGAGTGCCGTCACCGGTA    396
                     ||  ||||    |.|||||.|||||.||.||.||||||||.||.|||||.
RBAM_026170__    351 GTGCCTGC----GCCCTGTCAGATATTTCACGGGAGTGCCTTCTCCGGTC    396

BSNT_04253___    397 AAACGCCCTGAAGATACTGATATGGTCATCTTCCGTGAAAATACAGAAGA    446
                     |||||.|||||||||||.|||||||||||.|||||.||.|||||.|||||
RBAM_026170__    397 AAACGACCTGAAGATACGGATATGGTCATTTTCCGCGAGAATACGGAAGA    446

BSNT_04253___    447 TATTTACGCAGGCATCGAGTATGCAAAAGGCTCTGAAGAAGTGCAAAAGC    496
                     |||||||||.||.||.||||||||.|||||.||||||||.||..||||||
RBAM_026170__    447 TATTTACGCCGGAATTGAGTATGCGAAAGGTTCTGAAGAGGTTGAAAAGC    496

BSNT_04253___    497 TTATCAGCTTCCTTCAAAATGA-----GTTAAACGTCAATAAAATCCGTT    541
                     |.|||||||||||.||||||||     ||     ||.||.||||||||||
RBAM_026170__    497 TGATCAGCTTCCTGCAAAATGAAATGGGT-----GTTAACAAAATCCGTT    541

BSNT_04253___    542 TCCCTGAGACATCAGGTATCGGCATTAAGCCTGTTTCAGAAGAAGGAACA    591
                     |||||||.||.|||||.||||||||.||.||||||||.||||||||.|||
RBAM_026170__    542 TCCCTGAAACGTCAGGAATCGGCATCAAACCTGTTTCTGAAGAAGGCACA    591

BSNT_04253___    592 AGCCGCTTGGTCAGAGCTGCCATTGATTATGCGATCGAGCATGGCCGCAA    641
                     ||||||||.|||||||||||||||||.|||||||||||..|.|||||.||
RBAM_026170__    592 AGCCGCTTAGTCAGAGCTGCCATTGAGTATGCGATCGAAAACGGCCGTAA    641

BSNT_04253___    642 ATCTGTAACGCTTGTTCACAAAGGAAACATCATGAAGTTCACAGAAGGCG    691
                     .|||||.||||||||.||||||||||||||||||||||||||.|||||.|
RBAM_026170__    642 GTCTGTCACGCTTGTCCACAAAGGAAACATCATGAAGTTCACTGAAGGGG    691

BSNT_04253___    692 CGTTCAAAAACTGGGGCTATGAACTTGCTGAAAAAGAATACGGAGATAAA    741
                     |.||.||||||||||||||.||.|||||.||||.||||||||||||||||
RBAM_026170__    692 CATTTAAAAACTGGGGCTACGAGCTTGCCGAAAGAGAATACGGAGATAAA    741

BSNT_04253___    742 GTCTTCACATGGGCTCAATATGACCGCATTGCTGAAGAAGAAGGAAAAGA    791
                     ||.|||||.||||||.|||||||||||||||..|||.||||.||||||||
RBAM_026170__    742 GTATTCACTTGGGCTGAATATGACCGCATTGTCGAAAAAGACGGAAAAGA    791

BSNT_04253___    792 CGCTGCCAACAAAGCGCAAAGCGAAGCGGAAGCAGCAGGAAAAATCATTA    841
                     .||.||..|.||||||||.|||||.||||||||.||||||||||||||..
RBAM_026170__    792 AGCGGCTGATAAAGCGCAGAGCGATGCGGAAGCGGCAGGAAAAATCATCG    841

BSNT_04253___    842 TCAAAGACAGCATTGCTGACATTTTCCTTCAGCAGATCTTAACGCGTCCA    891
                     |||||||||||||.|||||.|||||||||||||||||||||||.|||||.
RBAM_026170__    842 TCAAAGACAGCATCGCTGATATTTTCCTTCAGCAGATCTTAACCCGTCCG    891

BSNT_04253___    892 AACGAGTTTGATGTCGTTGCGACAATGAACTTGAACGGAGATTACATTTC    941
                     |.|||.||.||.|||||.||||||||||||||.||||||||.||.||.||
RBAM_026170__    892 AGCGAATTCGACGTCGTGGCGACAATGAACTTAAACGGAGACTATATCTC    941

BSNT_04253___    942 TGATGCTCTTGCTGCGCAAGTCGGCGGAATCGGCATTGCTCCTGGAGCGA    991
                     ||||||.|||||.||.||.||.|||||||||||.||.||.||.|||||||
RBAM_026170__    942 TGATGCGCTTGCCGCTCAGGTAGGCGGAATCGGAATCGCGCCGGGAGCGA    991

BSNT_04253___    992 ACATCAACTACGAAACAGGACATGCGATTTTCGAGGCGACGCACGGAACG   1041
                     ||||||||||.||||||||.||||||||||||||.|||||.|||||||||
RBAM_026170__    992 ACATCAACTATGAAACAGGGCATGCGATTTTCGAAGCGACTCACGGAACG   1041

BSNT_04253___   1042 GCTCCTAAATATGCAGGCCTTGATAAAGTAAACCCATCTTCAGTTATTCT   1091
                     ||||||||||||||.||||||||.|||||.|||||.||.||.||.||.||
RBAM_026170__   1042 GCTCCTAAATATGCCGGCCTTGACAAAGTCAACCCGTCATCCGTCATCCT   1091

BSNT_04253___   1092 TTCAGGCGTTCTGCTTCTTGAGCATTTAGGA--TGGAACGAAGCGGCTGA   1139
                     ||||||.||.||.||||||||.||..|  ||  |||||.||.||.|||||
RBAM_026170__   1092 TTCAGGAGTGCTTCTTCTTGAACACCT--GAACTGGAATGAGGCTGCTGA   1139

BSNT_04253___   1140 TTTGGTTATCAAATCTATGGAAAAAACAATCGCTTCCAAAGTCGTAACTT   1189
                     .|||.|.||.|||||||||||||||||.||.|||||.|||||.|||||.|
RBAM_026170__   1140 CTTGATCATTAAATCTATGGAAAAAACGATTGCTTCAAAAGTAGTAACGT   1189

BSNT_04253___   1190 ACGATTTTGCCAGATTAATGGACGGGGCGACTGAAGTGAAATGTTCAGAG   1239
                     ||||||||||.||||||||||||||.||.|||||||||||||||||||||
RBAM_026170__   1190 ACGATTTTGCTAGATTAATGGACGGCGCAACTGAAGTGAAATGTTCAGAG   1239

BSNT_04253___   1240 TTCGGAGAAGAACTGATCAAAAACATGGACTAA   1272
                     ||.||.|||||.||.||.|||||||||||||.|
RBAM_026170__   1240 TTTGGTGAAGAGCTAATTAAAAACATGGACTGA   1272


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