Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04243 and RBAM_026110
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:40
# Commandline: needle
# -asequence dna-align/BSNT_04243.1.9828.seq
# -bsequence dna-align/RBAM_026110___ytaF.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04243-RBAM_026110___ytaF.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04243-RBAM_026110___ytaF.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04243
# 2: RBAM_026110___ytaF
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 651
# Identity: 480/651 (73.7%)
# Similarity: 480/651 (73.7%)
# Gaps: 51/651 ( 7.8%)
# Score: 1770.5
#
#
#=======================================
BSNT_04243 1 ATGCAAATGGTTTCTATACTGCTGC---TGGCGTTGGCTGTCAGCTTGGA 47
.|||||| ||||.||.||||||||||||||
RBAM_026110__ 1 ------------------TTGCTGCTTTTGGCTTTTGCTGTCAGCTTGGA 32
BSNT_04243 48 CAGTTTTTCAGTCGGATTTACGTACGGATTGAGAAAAATGAAAATACCGT 97
|||||||||||||||.||||||||.||.|||||||||||||||||.||||
RBAM_026110__ 33 CAGTTTTTCAGTCGGGTTTACGTATGGTTTGAGAAAAATGAAAATCCCGT 82
BSNT_04243 98 TTAAAGCGATTTTGGTTATCGCCTGCTGTTCCGGTGCTGTCATGTTTATA 147
|.|||||||||...||.|||||.||||||||.|...||||.|||||||||
RBAM_026110__ 83 TCAAAGCGATTGCCGTGATCGCTTGCTGTTCAGCCTCTGTGATGTTTATA 132
BSNT_04243 148 TCCATGCTGATCGGAAGCTTTCTCACGAAGTTTTTTCCTGTATATGTGAC 197
||||||||||||||....|||||.||.|||.|||||||.||||..||.||
RBAM_026110__ 133 TCCATGCTGATCGGCCATTTTCTGACAAAGATTTTTCCCGTATCCGTCAC 182
BSNT_04243 198 GGAGAAGCTTGGCGGTTTGATATTGGTTGGAATCGGTGCGTGGGT--TCT 245
|||.||.||.|||||..||||.||..|.||||||||.||.||||| |||
RBAM_026110__ 183 GGAAAAACTGGGCGGACTGATCTTAATCGGAATCGGGGCATGGGTCATCT 232
BSNT_04243 246 GTATCAATTTTTCAAACCGGCAAAAGATAAAGAATACCTATTGCATGAAA 295
| .|||||||||||||||||.|||||....||.|||.||||||||||||
RBAM_026110__ 233 G--GCAATTTTTCAAACCGGCTAAAGAGCCGGATTACTTATTGCATGAAA 280
BSNT_04243 296 AAACACTGCTTAATCTAGAGGT----TCGGTCATTAGGAATTGTGATTCA 341
||||..|.||||||||.||.|| ||| .|.||.||.||.|||||
RBAM_026110__ 281 AAACGTTACTTAATCTTGAAGTGAAATCG----CTGGGCATCGTCATTCA 326
BSNT_04243 342 TATTTTGAGAAAACCCATGAGTGCGGATATCGACAAATCGGGTGTGATCA 391
||||||||.||||||.|..||.||.|||||.||..||||.||....||.|
RBAM_026110__ 327 TATTTTGAAAAAACCGACCAGCGCCGATATTGATCAATCCGGAACCATTA 376
BSNT_04243 392 ACGGAATTGAGGCGGTCTTAT--TGGGATTTGCCTTATCGATTGATGCCT 439
|||||.|.|||||| |||.| |.||..|.||||||||.|||||.||.|
RBAM_026110__ 377 ACGGAGTCGAGGCG--CTTCTGCTCGGTATCGCCTTATCCATTGACGCGT 424
BSNT_04243 440 TTGGAGCAGGTATAGGCGCAGCCATTCTCGGTTTTTCGCCGATTGTGATG 489
||||.||.||..|.||.||.|||||||||||.|||||.|||.||.|||||
RBAM_026110__ 425 TTGGCGCCGGGCTGGGAGCGGCCATTCTCGGCTTTTCTCCGGTTATGATG 474
BSNT_04243 490 AGCATCGCCGT--GGCAATCATGAGCTCGCTGTTTGTATCAATTGGAATC 537
|||.|..|.|| ||| |.|||||||||||||||||.|||.|.||.||.
RBAM_026110__ 475 AGCGTGACTGTCGGGC--TGATGAGCTCGCTGTTTGTTTCACTCGGCATA 522
BSNT_04243 538 AATGCCGGCCATTTTCTGTCTAAG-TGGAAATGGATCGATAAAATGGCGT 586
||.||.||.|||||.||.|| ||| |||||.|||||.|||||||||.|.|
RBAM_026110__ 523 AACGCGGGGCATTTGCTTTC-AAGATGGAATTGGATAGATAAAATGACAT 571
BSNT_04243 587 TTTTGCCGGGGCTTCT----ATTAATCACGATTGGGCTCTGGAAATTGTA 632
||||||||||..|.|| ||| ||| ||.|||.|.||||||.||||
RBAM_026110__ 572 TTTTGCCGGGAGTCCTGCTGATT-ATC---ATCGGGATTTGGAAAATGTA 617
BSNT_04243 633 A 633
|
RBAM_026110__ 618 A 618
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