Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04242 and RBAM_026100
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:40
# Commandline: needle
# -asequence dna-align/BSNT_04242___ytaG.1.9828.seq
# -bsequence dna-align/RBAM_026100___coaE.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04242___ytaG-RBAM_026100___coaE.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04242___ytaG-RBAM_026100___coaE.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04242___ytaG
# 2: RBAM_026100___coaE
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 625
# Identity: 443/625 (70.9%)
# Similarity: 443/625 (70.9%)
# Gaps: 62/625 ( 9.9%)
# Score: 1523.5
#
#
#=======================================
BSNT_04242___ 1 TTGACCTTAGTCATTGGTTTAACGGGAGGAATAGCTAGCGGCAAAAGCAC 50
||||.|||.|||||.||||||||||||||.||.||.||||||||||||||
RBAM_026100__ 1 TTGAGCTTGGTCATCGGTTTAACGGGAGGCATCGCAAGCGGCAAAAGCAC 50
BSNT_04242___ 51 GGTAGCCAATATGCTGATTGAAAAAGGAATAACAGTTATAGATGCAGATA 100
||||||...|||||||||.||.|||..|||||||||.||.|||||.|||.
RBAM_026100__ 51 GGTAGCGCGTATGCTGATCGACAAAAAAATAACAGTCATTGATGCGGATG 100
BSNT_04242___ 101 TCATTGCAAAACAAGCGGTAGAAAAAGGGATGCCGGCCTACCGGCAAATC 150
.|||.||||||||.|||||.||||||||.||||||||.|||.|.|||||.
RBAM_026100__ 101 CCATCGCAAAACAGGCGGTGGAAAAAGGAATGCCGGCTTACGGACAAATT 150
BSNT_04242___ 151 ATTGACGAATTCGGTGAAGACATACTGCTCTCAAATGGCGATATAGATCG 200
.|.||.|.||||||..|||||||.|||||...||||||||||||.||..|
RBAM_026100__ 151 GTGGAAGCATTCGGAAAAGACATCCTGCTGGAAAATGGCGATATTGACAG 200
BSNT_04242___ 201 AAAAAAGCTTGGAGCGCTGGTATTTACAAATGAACAAAAACGTCT--CGC 248
||||||.||.||..|..|.||.||.||..|.|||||.||.||||| .||
RBAM_026100__ 201 AAAAAAACTCGGTTCTATCGTTTTCACTGACGAACAGAAGCGTCTGAAGC 250
BSNT_04242___ 249 TTTAAATGCA-ATTGTTCATCCCGCAGT-CAGGCAGGAAATGCTCAATCG 296
|.||| || ||.||||||||.||.|| |..|| |||||||||.||.|.
RBAM_026100__ 251 --TGAAT-CAGATCGTTCATCCGGCGGTGCGTGC-GGAAATGCTGAAACA 296
BSNT_04242___ 297 CCGTGATGAAGCCGTTGC---AAATCGGGAG-GCA-TTTGTTGTATTGGA 341
.||.|||||||||||||| ||| || ||| ||.||.||.|||||
RBAM_026100__ 297 GCGGGATGAAGCCGTTGCGCGAAA-----AGAGCAGTTCGTCGTTTTGGA 341
BSNT_04242___ 342 TATCCCGCTATTGTTCGAAAGCAAATTGGAATCATTGGTTGAT------- 384
|||.|||||.||||..|||||| || |.|||||
RBAM_026100__ 342 TATACCGCTTTTGTATGAAAGC-----GG-------GCTTGATTATCTTG 379
BSNT_04242___ 385 -----AAAATTATTGTGGTCAGTGT-------GACAAAAGATCTTCAACT 422
||..|..|.||.||||..|| |||| ||||.||
RBAM_026100__ 380 TCGGCAAGGTGCTCGTCGTCACCGTACCGGCAGACA-------TTCAGCT 422
BSNT_04242___ 423 GGAACGTCTGATGAAGCGCAATCAGCTGACGGAAGAAGAAGCAGTCAGCC 472
..||||.||||||.||||.|||...||.||.|||||||||||..|.||||
RBAM_026100__ 423 TAAACGGCTGATGGAGCGGAATTCCCTTACAGAAGAAGAAGCGATGAGCC 472
BSNT_04242___ 473 GTAT-CCGCTCTCAAATGCCCTTAGAGGAAAAAACAGCAAAAGCAGATCA 521
|.|| .|| ||.||||||||.|||..|||.||||||..||||||.||...
RBAM_026100__ 473 GGATAACG-TCACAAATGCCTTTAACGGATAAAACAAAAAAAGCTGACGC 521
BSNT_04242___ 522 AGTCATTGATAACAGCGGCACGCTTGAAGAGACCAAAAG--GCAGCTTGA 569
.|||||||||||||||||||..||||||.|.|| |||| .||||||||
RBAM_026100__ 522 CGTCATTGATAACAGCGGCAGTCTTGAATATAC--AAAGCACCAGCTTGA 569
BSNT_04242___ 570 TGAAATCATGAACAGCTGGGCATAA 594
.|||.|..|||.|.|||||||||||
RBAM_026100__ 570 GGAAGTATTGAGCGGCTGGGCATAA 594
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